madness Namespace Reference

File holds all helper structures necessary for the CC_Operator and CC2 class. More...

Namespaces
	archive
	Namespace for I/O tools.
	cblas
	constants
	Namespace storing mathematical and physical constants.
	detail
	guessfactory
	Hash_private
	info
	Runtime details on the configuration and version of MADNESS.
	is_istreammable_ns
	is_ostreammable_ns
	lapacke
	meta
	operators
	profiling
	tr1
	units

Classes
struct	abs_op
struct	abs_square_op
class	AbstractVectorSpace
	A generic vector space which provides common operations needed by linear algebra routines (norm, inner product, etc.) More...
class	AC
struct	accumulate_op
	inserts/accumulates coefficients into impl's tree More...
struct	ACParameters
	Contains all the parameters for the asymptotic correction. More...
struct	add_future
	maps type T to Future<T>. More...
struct	add_future< Future< T > >
	maps Future<T> to Future<T>. More...
class	AdhocNuclearCorrelationFactor
	this ncf has no information about itself, only U2 and U1 assigned More...
class	AmArg
	World active message that extends an RMI message. More...
struct	apply_kernel_helper
struct	asymptotic_density
struct	asymptotic_slater
struct	asymptotic_slater_kernel
class	Atom
struct	atom_information
	Needed information about atom to compute asymptotic correction. More...
struct	AtomCore
class	atomic_attraction
class	AtomicBasis
	Represents multiple shells of contracted gaussians on a single center. More...
class	AtomicBasisFunction
	Used to represent one basis function from a shell on a specific center. More...
class	AtomicBasisSet
	Contracted Gaussian basis. More...
struct	AtomicData
class	AtomicInt
	An integer with atomic set, get, read+increment, read+decrement, and decrement+test operations. More...
class	BandlimitedPropagator
	Class to evaluate the filtered Schrodinger free-particle propagator in real space. More...
class	Barrier
class	BaseTensor
	The base class for tensors defines generic capabilities. More...
class	BasisFunctions
class	Batch
	a batch consists of a 2D-input batch and a 1D-output batch: K-batch <- (I-batch, J-batch) More...
class	Batch_1D
struct	BinaryOpStructure
	computes the corrected exchange correlation potential using the hartree potential More...
class	BinSorter
	A parallel bin sort across MPI processes. More...
class	BoundaryConditions
	This class is used to specify boundary conditions for all operators. More...
class	BSHApply
	apply the BSH operator on a vector of functions with corresponding potentials More...
class	BSHFunctionInterface
	a function like f(x) = exp(-mu x)/x More...
struct	CalculationParameters
class	CallbackInterface
	The class used for callbacks (e.g., dependency tracking). More...
struct	cartesian_grid
class	CC2
struct	CC_vecfunction
	A helper structure which holds a map of functions. More...
class	CCConvolutionOperator
class	CCFunction
	structure for a CC Function 3D which holds an index and a type More...
struct	CCIntermediatePotentials
	little helper structure which manages the stored singles potentials More...
struct	CCMessenger
class	CCPair
class	CCPairFunction
	a 6D function, either in full or low rank form, possibly including an 2-particle function More...
struct	CCParameters
struct	CCTimer
	Timer Structure. More...
struct	charactertable
struct	CISData
	POD for CIS excitation. More...
class	Cloud
	cloud class More...
class	CoeffTracker
	a class to track where relevant (parent) coeffs are More...
struct	commandlineparser
	very simple command line parser More...
class	Complex_CIS_Parameters
class	ComplexExp
class	CompositeFactory
	Factory for facile setup of a CompositeFunctorInterface and its FuncImpl. More...
class	CompositeFunctorInterface
	CompositeFunctorInterface implements a wrapper of holding several functions and functors. More...
class	ConcurrentHashMap
struct	conditional_conj_struct
	For real types return value, for complex return conjugate. More...
struct	conditional_conj_struct< Q, true >
	For real types return value, for complex return conjugate. More...
class	ConditionVariable
	Scalable and fair condition variable (spins on local value) More...
struct	conj_op
class	ContractedGaussianShell
	Represents a single shell of contracted, Cartesian, Gaussian primitives. More...
class	Convolution1D
	Provides the common functionality/interface of all 1D convolutions. More...
struct	ConvolutionData1D
	!!! Note that if Rnormf is zero then ALL of the tensors are empty More...
class	ConvolutionND
	Array of 1D convolutions (one / dimension) More...
struct	CoreOrbital
class	CoreOrbitalDerivativeFunctor
class	CoreOrbitalFunctor
struct	CorePotential
	Represents a core potential. More...
class	CorePotentialManager
class	Coulomb
class	CubicInterpolationTable
	An class for 1-D data interpolation based on cubic polynomials. More...
struct	default_allocator
class	DeferredDeleter
struct	dens_inv
struct	density_mask_operator
class	DependencyInterface
	Provides an interface for tracking dependencies. More...
class	Derivative
	Implements derivatives operators with variety of boundary conditions on simulation domain. More...
class	DerivativeBase
	Tri-diagonal operator traversing tree primarily for derivative operator. More...
class	DerivativeOperator
struct	DFParameters
class	DFT
class	DFTCoulombOp
class	DFTCoulombPeriodicOp
class	dftgrid
class	DFTNuclearChargeDensityOp
class	DFTNuclearPotentialOp
class	Diamagnetic_potential_factor
	to be put in a separate file More...
class	DipoleFunctor
	A MADNESS functor to compute either x, y, or z. More...
class	Displacements
	Holds displacements for applying operators to avoid replicating for all operators. More...
class	DistributedMatrix
	Manages data associated with a row/column/block distributed array. More...
class	DistributedMatrixDistribution
struct	divide_add_interpolate
	Class to compute terms of the potential. More...
class	DNuclear
	derivative of the (regularized) nuclear potential wrt nuclear displacements More...
class	DomainMaskInterface
	The interface for masking functions defined by signed distance functions. More...
class	DomainMaskSDFFunctor
	Framework for combining a signed distance function (sdf) with a domain mask to produce MADNESS functions. More...
struct	DQStats
class	DQueue
	A thread safe, fast but simple doubled-ended queue. More...
class	EigSolver
class	EigSolverOp
struct	ElectronCuspyBox_op
struct	ElectronicStructureParams
class	ElectronPair
	enhanced POD for the pair functions More...
struct	ElectronPairIterator
class	ElectronRepulsionInterface
	a function like f(x)=1/x More...
class	ElementaryInterface
	ElementaryInterface (formerly FunctorInterfaceWrapper) interfaces a c-function. More...
struct	error_leaf_op
class	Exchange
class	F12Parameters
class	F12Potentials
	Class that provides all necessary F12 Potentials and Integrals. More...
class	Fock
	Computes matrix representation of the Fock operator. More...
class	Function
	A multiresolution adaptive numerical function. More...
struct	function_real2complex_op
class	FunctionCommonData
	FunctionCommonData holds all Function data common for given k. More...
class	FunctionCommonFunctionality
	collect common functionality does not need to be member function of funcimpl More...
class	FunctionDefaults
	FunctionDefaults holds default paramaters as static class members. More...
class	FunctionFactory
	FunctionFactory implements the named-parameter idiom for Function. More...
class	FunctionFunctorInterface
	Abstract base class interface required for functors used as input to Functions. More...
class	FunctionImpl
	FunctionImpl holds all Function state to facilitate shallow copy semantics. More...
class	FunctionInterface
	FunctionInterface implements a wrapper around any class with the operator()() More...
class	FunctionNode
	FunctionNode holds the coefficients, etc., at each node of the 2^NDIM-tree. More...
class	FunctionSpace
	A vector space using MADNESS Functions. More...
class	FunctorInterface
	FunctorInterface interfaces a class or struct with an operator()() More...
class	Future
	A future is a possibly yet unevaluated value. More...
class	Future< Future< T > >
	A future of a future is forbidden (by deleted constructor). More...
class	Future< std::vector< Future< T > > >
	Specialization of Future for a vector of Futures. More...
class	Future< void >
	Specialization of Future<void> for internal convenience. This does nothing useful! More...
struct	future_to_ref
struct	future_to_ref< const Future< T > & >
struct	future_to_ref< Future< T > & >
struct	future_to_ref< Future< T > * >
struct	future_to_ref< Future< T > >
class	FutureImpl
	Implements the functionality of futures. More...
class	FutureImpl< void >
	Specialization of FutureImpl<void> for internal convenience. This does nothing useful! More...
class	GaussianConvolution1D
	1D convolution with (derivative) Gaussian; coeff and expnt given in simulation coordinates [0,1] More...
struct	GaussianConvolution1DCache
class	GaussianDomainMask
	Use a Gaussian for the surface function and the corresponding erf for the domain mask. More...
class	GaussianGenericFunctor
class	GaussSlater
	A nuclear correlation factor class. More...
class	GeneralTwoElectronInterface
	a function like f(x)=1/x More...
class	GenericConvolution1D
	Generic 1D convolution using brute force (i.e., slow) adaptive quadrature for rnlp. More...
class	GenTensor
class	GFit
class	Gnuplot
class	GradientalGaussSlater
	A nuclear correlation factor class. More...
class	gridbase
class	Group
	A collection of processes. More...
class	GTHPseudopotential
struct	harmonic_potential_boxed
	functor for the diamagnetic term in a box More...
struct	hartree_convolute_leaf_op
struct	hartree_leaf_op
	returns true if the result of a hartree_product is a leaf node (compute norm & error) More...
class	HartreeFock
class	HartreeFockCoulombOp
class	HartreeFockExchangeOp
class	HartreeFockNuclearPotentialOp
struct	Hash
	Hash functor. More...
class	HighDimIndexIterator
class	IEigSolverObserver
struct	imag_op
class	IndexIterator
struct	Info
	POD holding some basic functions and some intermediates for the CC2 calculation. More...
struct	InitParameters
struct	insert_op
	insert/replaces the coefficients into the function More...
class	int_factor_functor
	Functor for the correction factor, which is multiplied with the exchange correlation potential. More...
struct	is_any_function_pointer
	is true type if T is a pointer to free or member function More...
struct	is_any_function_pointer< T, std::enable_if_t< std::is_member_function_pointer< T >::value||is_function_pointer_v< T > > >
struct	is_archive
	Checks if T is an archive type. More...
struct	is_archive< archive::BinaryFstreamInputArchive >
struct	is_archive< archive::BinaryFstreamOutputArchive >
struct	is_archive< archive::BufferInputArchive >
struct	is_archive< archive::BufferOutputArchive >
struct	is_archive< archive::ContainerRecordInputArchive >
struct	is_archive< archive::ContainerRecordOutputArchive >
struct	is_archive< archive::MPIInputArchive >
struct	is_archive< archive::MPIOutputArchive >
struct	is_archive< archive::MPIRawInputArchive >
struct	is_archive< archive::MPIRawOutputArchive >
struct	is_archive< archive::ParallelInputArchive< localarchiveT > >
struct	is_archive< archive::ParallelOutputArchive< localarchiveT > >
struct	is_archive< archive::TextFstreamInputArchive >
struct	is_archive< archive::TextFstreamOutputArchive >
struct	is_archive< archive::VectorInputArchive >
struct	is_archive< archive::VectorOutputArchive >
struct	is_cereal_archive
struct	is_default_serializable
	is std::true_type if T can be serialized to Archive without specialized serialize() method More...
struct	is_default_serializable_helper
struct	is_default_serializable_helper< Archive, archive::archive_array< T >, std::enable_if_t< is_default_serializable_helper< Archive, T >::value > >
struct	is_default_serializable_helper< archive::BinaryFstreamInputArchive, T, std::enable_if_t< is_trivially_serializable< T >::value > >
struct	is_default_serializable_helper< archive::BinaryFstreamOutputArchive, T, std::enable_if_t< is_trivially_serializable< T >::value > >
struct	is_default_serializable_helper< archive::BufferInputArchive, T, std::enable_if_t< is_trivially_serializable< T >::value > >
struct	is_default_serializable_helper< archive::BufferOutputArchive, T, std::enable_if_t< is_trivially_serializable< T >::value > >
struct	is_default_serializable_helper< archive::ContainerRecordInputArchive, T, std::enable_if_t< is_trivially_serializable< T >::value > >
struct	is_default_serializable_helper< archive::ContainerRecordOutputArchive, T, std::enable_if_t< is_trivially_serializable< T >::value > >
struct	is_default_serializable_helper< archive::MPIInputArchive, T, std::enable_if_t< is_trivially_serializable< T >::value > >
struct	is_default_serializable_helper< archive::MPIOutputArchive, T, std::enable_if_t< is_trivially_serializable< T >::value > >
struct	is_default_serializable_helper< archive::MPIRawInputArchive, T, std::enable_if_t< is_trivially_serializable< T >::value > >
struct	is_default_serializable_helper< archive::MPIRawOutputArchive, T, std::enable_if_t< is_trivially_serializable< T >::value > >
struct	is_default_serializable_helper< archive::ParallelInputArchive< localarchiveT >, T, std::enable_if_t< is_trivially_serializable< T >::value > >
struct	is_default_serializable_helper< archive::ParallelOutputArchive< localarchiveT >, T, std::enable_if_t< is_trivially_serializable< T >::value > >
struct	is_default_serializable_helper< archive::TextFstreamInputArchive, T, std::enable_if_t< is_iostreammable_v< T >||is_any_function_pointer_v< T > > >
struct	is_default_serializable_helper< archive::TextFstreamOutputArchive, T, std::enable_if_t< is_iostreammable_v< T >||std::is_function_v< T >||is_any_function_pointer_v< T > > >
struct	is_default_serializable_helper< archive::VectorInputArchive, T, std::enable_if_t< is_trivially_serializable< T >::value > >
struct	is_default_serializable_helper< archive::VectorOutputArchive, T, std::enable_if_t< is_trivially_serializable< T >::value > >
struct	is_function_pointer
	is true type if T is a pointer to a free function More...
struct	is_function_pointer< T, std::enable_if_t< std::is_function< typename std::remove_pointer< T >::type >::value > >
struct	is_future
	test if a type is a future. More...
struct	is_future< Future< T > >
struct	is_input_archive
	Checks if T is an input archive type. More...
struct	is_input_archive< archive::BinaryFstreamInputArchive >
struct	is_input_archive< archive::BufferInputArchive >
struct	is_input_archive< archive::ContainerRecordInputArchive >
struct	is_input_archive< archive::MPIInputArchive >
struct	is_input_archive< archive::MPIRawInputArchive >
struct	is_input_archive< archive::ParallelInputArchive< localarchiveT > >
struct	is_input_archive< archive::TextFstreamInputArchive >
struct	is_input_archive< archive::VectorInputArchive >
struct	is_istreammable
struct	is_madness_function
struct	is_madness_function< madness::Function< T, NDIM > >
struct	is_madness_function_vector
struct	is_madness_function_vector< std::vector< typename madness::Function< T, NDIM > > >
struct	is_ostreammable
struct	is_output_archive
	Checks if T is an output archive type. More...
struct	is_output_archive< archive::BinaryFstreamOutputArchive >
struct	is_output_archive< archive::BufferOutputArchive >
struct	is_output_archive< archive::ContainerRecordOutputArchive >
struct	is_output_archive< archive::MPIOutputArchive >
struct	is_output_archive< archive::MPIRawOutputArchive >
struct	is_output_archive< archive::ParallelOutputArchive< localarchiveT > >
struct	is_output_archive< archive::TextFstreamOutputArchive >
struct	is_output_archive< archive::VectorOutputArchive >
struct	is_scalar_result_ptr
struct	is_scalar_result_ptr< std::shared_ptr< madness::ScalarResult< T > > >
struct	is_scalar_result_ptr_vector
struct	is_scalar_result_ptr_vector< std::vector< std::shared_ptr< typename madness::ScalarResult< T > > > >
struct	is_serializable
struct	is_text_archive
	This trait types tests if Archive is a text archive. More...
struct	is_text_archive< archive::TextFstreamInputArchive >
struct	is_text_archive< archive::TextFstreamOutputArchive >
struct	is_trivially_serializable
struct	is_vector
struct	is_vector< std::vector< Q > >
struct	IsSupported
struct	IsSupported< TypeData, ReturnType, true >
class	Key
	Key is the index for a node of the 2^NDIM-tree. More...
class	KeyChildIterator
	Iterates in lexical order thru all children of a key. More...
class	Kinetic
class	KPoint
class	Laplacian
	the Laplacian operator: \sum_i \nabla^2_i More...
struct	LBCost
struct	lbcost
class	LBDeuxPmap
class	LBNodeDeux
struct	leaf_op
class	Leaf_op
class	Leaf_op_other
class	LevelPmap
	A pmap that locates children on odd levels with their even level parents. More...
class	LinAlgException
	Linear algebra Exception. More...
class	LinearSlater
	A nuclear correlation factor class. More...
class	LLRVDomainMask
	Provides the Li-Lowengrub-Ratz-Voight (LLRV) domain mask characteristic functions. More...
class	LoadBalanceDeux
class	LoadBalImpl
class	Localizer
class	LocalPotentialOperator
class	LowDimIndexIterator
class	LowRankFunction
	LowRankFunction represents a hi-dimensional (NDIM) function as a sum of products of low-dimensional (LDIM) functions. More...
class	LowRankFunctionFactory
struct	LowRankFunctionParameters
class	lr_pot_functor
	Functor for the 1/r potential to induce the correct asymptotic behaviour of the exchange correlation potential. More...
struct	LRFunctorBase
	the low-rank functor is what the LowRankFunction will represent More...
struct	LRFunctorF12
struct	LRFunctorPure
class	Lz
	the z component of the angular momentum More...
class	MacroTask
class	MacroTaskBase
	base class More...
class	MacroTaskConstantPart
class	MacroTaskIntermediate
class	MacroTaskIteratePair
class	MacroTaskMp2ConstantPart
class	MacroTaskMp2UpdatePair
class	MacroTaskOperationBase
class	MacroTaskPartitioner
	partition one (two) vectors into 1D (2D) batches. More...
class	MacroTaskQ
class	MadnessException
	Base class for exceptions thrown in MADNESS. More...
struct	MatrixInnerTask
struct	max_of_x_1_smooth
struct	merging_operator
class	molecular_grid
	given a molecule, return a suitable grid More...
class	MolecularCorePotentialFunctor
class	MolecularEnergy
class	MolecularOptimizationParameters
struct	MolecularOptimizationTargetInterface
class	MolecularOptimizer
	Molecular optimizer derived from the QuasiNewton optimizer. More...
class	MolecularOrbitals
class	MolecularPotentialFunctor
class	Molecule
class	MomentFunctor
	A MADNESS functor to compute the cartesian moment x^i * y^j * z^k (i, j, k integer and >= 0) More...
class	MP2
	a class for computing the first order wave function and MP2 pair energies More...
class	MP3
struct	mul_leaf_op
struct	munging_operator
class	Mutex
	Mutex using pthread mutex operations. More...
class	MutexFair
	A scalable and fair mutex (not recursive) More...
class	MutexReaderWriter
class	MutexWaiter
class	MyPmap
	Procmap implemented using Tree of TreeCoords. More...
struct	MyTimer
	Timer structure. More...
class	Nemo
	The Nemo class. More...
class	Nemo_complex_Parameters
class	NemoBase
class	NonlinearSolverND
	A simple Krylov-subspace nonlinear equation solver. More...
class	NonstandardIndexIterator
struct	noop
class	Nuclear
class	NuclearCorrelationFactor
	ABC for the nuclear correlation factors. More...
struct	NuclearCuspyBox_op
class	OEP
class	OEP_Parameters
struct	op_leaf_op
class	Operator
	A generic operator: takes in one T and produces another T. More...
struct	OperatorInfo
struct	OptimizationTargetInterface
	The interface to be provided by functions to be optimized. More...
struct	OptimizerInterface
	The interface to be provided by optimizers. More...
struct	OrbitalIterator
	iterates the third index for pair coupling More...
class	OuterProjector
	an outer product of two projectors More...
struct	PairEnergies
	POD structure for energies. More...
struct	Pairs
struct	PairVectorMap
class	ParametrizedExchange
struct	particle
class	PCM
	interface class to the PCMSolver library More...
struct	permutation
	permutations in physisists notation: <ij | kl> = (ik | jl), loop over ik<jl More...
class	pg_operator
	This class implements the symmetry operations (not the point groups) More...
struct	PlotParameters
class	PNO
struct	PNOPairs
	POD for PNO code. More...
class	PNOParameters
class	poly4erfc
class	Polynomial
	A nuclear correlation factor class. More...
class	PoolTaskInterface
	Lowest level task interface. More...
class	PoolTaskNull
	A no-operation task used for various purposes. More...
class	PotentialManager
struct	printleveler
class	ProcessKey
	Key object that includes the process information. More...
struct	ProfileStat
	Simple container for parallel profile statistic. More...
class	Projector
	simple projector class More...
class	projector_irrep
class	ProjectorBase
class	ProjRLMFunctor
class	ProjRLMStore
class	PseudoNuclearCorrelationFactor
class	PthreadConditionVariable
	Simple wrapper for Pthread condition variable with its own mutex. More...
class	QCCalculationParametersBase
	class for holding the parameters for calculation More...
struct	QCParameter
	structure holding the value for a given parameter More...
class	QCPropertyInterface
	class implementing properties of QC models More...
struct	qmsg
class	QProjector
	orthogonality projector More...
class	QuasiNewton
	Optimization via quasi-Newton (BFGS or SR1 update) More...
struct	R_times_arg_div_R
	compute the expression (\sum_i R_i)^(-1) \sum_i R_i arg(r,B,v_i) More...
class	Random
	A random number generator (portable, vectorized, and thread-safe) More...
class	randomgrid
	grid with random points around the origin, with a Gaussian distribution More...
class	RandomizedMatrixDecomposition
struct	RandomState
class	Range
	Range, vaguely a la Intel TBB, to encapsulate a random-access, STL-like start and end iterator with chunksize. More...
struct	real_op
struct	Recordlist
class	RecursiveMutex
	Recursive mutex using pthread mutex operations. More...
class	RemoteReference
	Simple structure used to manage references/pointers to remote instances. More...
struct	remove_fcvr
struct	remove_future
	maps Future<T> to T. More...
struct	remove_future< const Future< T > & >
struct	remove_future< const Future< T > >
struct	remove_future< Future< T > & >
struct	remove_future< Future< T > && >
struct	remove_future< Future< T > >
	This metafunction maps Future<T> to T. More...
struct	response_function_allocator
struct	response_matrix_allocator
struct	response_space
struct	ResponseParameters
struct	RMDFactory
	simple factory pattern for the RandomizedMatrixDecomposition More...
class	RMI
	This class implements the communications server thread and provides the only send interface. More...
struct	RMISendReq
	This for RMI server thread to manage lifetime of WorldAM messages that it is sending. More...
struct	RMIStats
class	ScalarResult
	helper class for returning the result of a task, which is not a madness Function, but a simple scalar More...
class	SCF
class	scf_data
class	SCFOperatorBase
class	SCFProtocol
	struct for running a protocol of subsequently tightening precision More...
class	ScopedMutex
	Mutex that is applied/released at start/end of a scope. More...
class	SDFBox
	A box (3 dimensions) More...
class	SDFCircle
	A circle (2 dimensions) More...
class	SDFCone
	A cone (3 dimensions) More...
class	SDFCube
	A cube (3 dimensions) More...
class	SDFCylinder
	A cylinder (3 dimensions) More...
class	SDFEllipsoid
	An ellipsoid (3 dimensions) More...
class	SDFParaboloid
	A paraboloid (3 dimensions) More...
class	SDFPlane
	A plane surface (3 dimensions) More...
class	SDFRectangle
	A rectangle (2 dimensions) More...
class	SDFSphere
	A spherical surface (3 dimensions) More...
class	SeparatedConvolution
	Convolutions in separated form (including Gaussian) More...
struct	SeparatedConvolutionData
	SeparatedConvolutionData keeps data for all terms, all dimensions. More...
struct	SeparatedConvolutionInternal
struct	ShallowNode
	shallow-copy, pared-down version of FunctionNode, for special purpose only More...
class	SignedDFInterface
	The interface for a signed distance function (sdf). More...
class	SimpleCache
	Simplified interface around hash_map to cache stuff for 1D. More...
class	SimplePmap
	A simple process map. More...
class	Slater
	A nuclear correlation factor class. More...
struct	slater_kernel
struct	slater_kernel_apply
class	SlaterF12Interface
	a function like f(x) = (1 - exp(-mu x))/(2 gamma) More...
class	SlaterFunctionInterface
	a function like f(x)=exp(-mu x) More...
class	Slice
	A slice defines a sub-range or patch of a dimension. More...
class	SliceGenTensor
class	SliceLowRankTensor
	implements a temporary(!) slice of a LowRankTensor More...
class	SliceTensor
	Indexing a non-constant tensor with slices returns a SliceTensor. More...
class	smooth
class	Solver
	The main class of the periodic DFT solver. More...
struct	SolverTargetInterface
	The interface to be provided by targets for non-linear equation solver. More...
struct	Specialbox_op
class	SpectralPropagator
	Spectral propagtor in time. Refer to documentation of file spectralprop.h for math detail. More...
class	SpectralPropagatorGaussLobatto
struct	spherical_box
	an 2-dimensional smooth mask that is 1 inside the radius and 0 outside More...
class	Spinlock
	Spinlock using pthread spinlock operations. More...
class	SRConf
class	Stack
	Dynamically sized Stack with small stack size optimization. More...
class	SteepestDescent
	Unconstrained minimization via steepest descent. More...
class	StrongOrthogonalityProjector
	a SO projector class More...
class	Subspace
	The SubspaceK class is a container class holding previous orbitals and residuals. More...
class	SubspaceK
	The SubspaceK class is a container class holding previous orbitals and residuals. More...
class	SVDTensor
class	SystolicFixOrbitalOrders
class	SystolicMatrixAlgorithm
	Base class for parallel algorithms that employ a systolic loop to generate all row pairs in parallel. More...
class	SystolicPMOrbitalLocalize
class	TaggedKey
	Key object that uses a tag to differentiate keys. More...
class	TaskAttributes
	Contains attributes of a task. More...
struct	TaskFn
	Wrap a callable object and its arguments into a task function. More...
struct	TaskFunction
class	TaskInterface
	All world tasks must be derived from this public interface. More...
struct	TaskMemfun
class	TaskThreadEnv
	Used to pass information about the thread environment to a user's task. More...
class	TDHF
struct	TDHF_allocator
class	Tensor
	A tensor is a multidimension array. More...
struct	TensorArgs
	TensorArgs holds the arguments for creating a LowRankTensor. More...
class	TensorException
	Tensor is intended to throw only TensorExceptions. More...
class	TensorIterator
struct	TensorResultType
	TensorResultType<L,R>::type is the type of (L op R) where op is nominally multiplication. More...
class	TensorTrain
class	TensorTypeData
	Traits class to specify support of numeric types. More...
class	TensorTypeFromId
	This provides the reverse mapping from integer id to type name. More...
struct	test_output
	small class for pretty printing of test output More...
class	Thread
	Simplified thread wrapper to hide pthread complexity. More...
class	ThreadBase
	Simplified thread wrapper to hide pthread complexity. More...
class	ThreadBinder
class	ThreadPool
	A singleton pool of threads for dynamic execution of tasks. More...
class	ThreadPoolThread
	ThreadPool thread object. More...
struct	timer
class	Timer
struct	trajectory
struct	true_op
class	TwoBodyFunctionComponentBase
class	TwoBodyFunctionPureComponent
	a two-body, explicitly 6-dimensional function More...
class	TwoBodyFunctionSeparatedComponent
class	TwoElectronFactory
	factory for generating TwoElectronInterfaces More...
class	TwoElectronInterface
	base class to compute the wavelet coefficients for an isotropic 2e-operator More...
class	twoscale_cache_class
struct	unaryexp
struct	UnaryOpStructure
	computes the corrected exchange correlation potential using the multipole approximation More...
class	uniqueidT
	Class for unique global IDs. More...
struct	valarray_allocator
class	Vector
	A simple, fixed dimension vector. More...
struct	vector_function_allocator
class	VectorOfFunctionsSpace
	A vector space using MADNESS Vectors of MADNESS Functions. More...
class	VectorSpace
	A vector space using MADNESS Vectors. More...
class	VLocalFunctor
class	World
	A parallel world class. More...
struct	WorldAbsMaxOp
struct	WorldAbsMinOp
class	WorldAmInterface
	Implements AM interface. More...
struct	WorldBitAndOp
struct	WorldBitOrOp
struct	WorldBitXorOp
class	WorldContainer
	Makes a distributed container with specified attributes. More...
class	WorldContainerImpl
	Internal implementation of distributed container to facilitate shallow copy. More...
class	WorldContainerIterator
	Iterator for distributed container wraps the local iterator. More...
class	WorldDCDefaultPmap
	Default process map is "random" using madness::hash(key) More...
class	WorldDCLocalPmap
	Local process map will always return the current process as owner. More...
class	WorldDCPmapInterface
	Interface to be provided by any process map. More...
class	WorldDCRedistributeInterface
class	WorldGopInterface
	Provides collectives that interoperate with the AM and task interfaces. More...
struct	WorldLogicAndOp
struct	WorldLogicOrOp
struct	WorldMaxOp
class	WorldMemInfo
	Used to output memory statistics and control tracing, etc. More...
struct	WorldMinOp
class	WorldMpiInterface
	This class wraps/extends the MPI interface for World. More...
struct	WorldMultOp
class	WorldObject
	Implements most parts of a globally addressable object (via unique ID). More...
struct	WorldObjectBase
	Base class for WorldObject, useful for introspection. More...
class	WorldProfile
	Singleton-like class for holding profiling data and functionality. More...
struct	WorldProfileEntry
	Used to store profiler info. More...
class	WorldProfileObj
struct	WorldSumOp
class	WorldTaskQueue
	Multi-threaded queue to manage and run tasks. More...
struct	write_test_input
	will write a test input and remove it from disk upon destruction More...
class	WSTAtomicBasisFunctor
struct	X_space
struct	X_vector
struct	xc_functional
	Class to compute the energy functional. More...
struct	xc_kernel_apply
	Class to compute terms of the kernel. More...
struct	xc_lda_potential
	Compute the spin-restricted LDA potential using unaryop (only for the initial guess) More...
struct	xc_potential
	Class to compute terms of the potential. More...
class	XCfunctional
	Simplified interface to XC functionals. More...
class	XCFunctionalLDA
class	XCOperator
	operator class for the handling of DFT exchange-correlation functionals More...
class	XNonlinearSolver
	Generalized version of NonlinearSolver not limited to a single madness function. More...
class	Zcis
class	Znemo

Typedefs
typedef void(*	am_handlerT) (const AmArg &)
	Type of AM handler functions. More...
typedef SeparatedConvolution< double_complex, 1 >	complex_convolution_1d
typedef std::shared_ptr< complex_convolution_1d >	complex_convolution_1d_ptr
typedef SeparatedConvolution< double_complex, 2 >	complex_convolution_2d
typedef std::shared_ptr< complex_convolution_2d >	complex_convolution_2d_ptr
typedef SeparatedConvolution< double_complex, 3 >	complex_convolution_3d
typedef std::shared_ptr< complex_convolution_3d >	complex_convolution_3d_ptr
typedef SeparatedConvolution< double_complex, 4 >	complex_convolution_4d
typedef std::shared_ptr< complex_convolution_4d >	complex_convolution_4d_ptr
typedef SeparatedConvolution< double_complex, 5 >	complex_convolution_5d
typedef std::shared_ptr< complex_convolution_5d >	complex_convolution_5d_ptr
typedef SeparatedConvolution< double_complex, 6 >	complex_convolution_6d
typedef std::shared_ptr< complex_convolution_6d >	complex_convolution_6d_ptr
typedef Derivative< double_complex, 1 >	complex_derivative_1d
typedef Derivative< double_complex, 2 >	complex_derivative_2d
typedef Derivative< double_complex, 3 >	complex_derivative_3d
typedef Derivative< double_complex, 4 >	complex_derivative_4d
typedef Derivative< double_complex, 5 >	complex_derivative_5d
typedef Derivative< double_complex, 6 >	complex_derivative_6d
typedef FunctionFactory< double_complex, 1 >	complex_factory_1d
typedef FunctionFactory< double_complex, 2 >	complex_factory_2d
typedef FunctionFactory< double_complex, 3 >	complex_factory_3d
typedef FunctionFactory< double_complex, 4 >	complex_factory_4d
typedef FunctionFactory< double_complex, 5 >	complex_factory_5d
typedef FunctionFactory< double_complex, 6 >	complex_factory_6d
typedef FunctionImpl< double_complex, 1 >	complex_funcimpl_1d
typedef FunctionImpl< double_complex, 2 >	complex_funcimpl_2d
typedef FunctionImpl< double_complex, 3 >	complex_funcimpl_3d
typedef FunctionImpl< double_complex, 4 >	complex_funcimpl_4d
typedef FunctionImpl< double_complex, 5 >	complex_funcimpl_5d
typedef FunctionImpl< double_complex, 6 >	complex_funcimpl_6d
typedef Function< double_complex, 1 >	complex_function_1d
typedef Function< double_complex, 2 >	complex_function_2d
typedef Function< double_complex, 3 >	complex_function_3d
typedef Function< double_complex, 4 >	complex_function_4d
typedef Function< double_complex, 5 >	complex_function_5d
typedef Function< double_complex, 6 >	complex_function_6d
typedef Function< std::complex< double >, 3 >	complex_functionT
typedef std::shared_ptr< FunctionFunctorInterface< double_complex, 1 > >	complex_functor_1d
typedef std::shared_ptr< FunctionFunctorInterface< double_complex, 2 > >	complex_functor_2d
typedef std::shared_ptr< FunctionFunctorInterface< double_complex, 3 > >	complex_functor_3d
typedef std::shared_ptr< FunctionFunctorInterface< double_complex, 4 > >	complex_functor_4d
typedef std::shared_ptr< FunctionFunctorInterface< double_complex, 5 > >	complex_functor_5d
typedef std::shared_ptr< FunctionFunctorInterface< double_complex, 6 > >	complex_functor_6d
typedef Convolution1D< double_complex >	complex_operatorT
typedef Tensor< double_complex >	complex_tensor
typedef PthreadConditionVariable	CONDITION_VARIABLE_TYPE
typedef Vector< double, 1 >	coord_1d
typedef Vector< double, 2 >	coord_2d
typedef Vector< double, 3 >	coord_3d
typedef Vector< double, 4 >	coord_4d
typedef Vector< double, 5 >	coord_5d
typedef Vector< double, 6 >	coord_6d
typedef Vector< double, 3 >	coordT
typedef std::vector< complex_functionT >	cvecfuncT
template<typename T >
using	decay_tuple = decltype(decay_types(std::declval< T >()))
typedef DistributedMatrix< double >	distmatT
typedef std::pair< uniqueidT, std::size_t >	DistributedID
	Distributed ID which is used to identify objects. More...
typedef FunctionFactory< double, 3 >	factoryT
typedef FunctionDefaults< 1 >	function_defaults_1d
typedef FunctionDefaults< 2 >	function_defaults_2d
typedef FunctionDefaults< 3 >	function_defaults_3d
typedef FunctionDefaults< 4 >	function_defaults_4d
typedef FunctionDefaults< 5 >	function_defaults_5d
typedef FunctionDefaults< 6 >	function_defaults_6d
typedef Function< double, 3 >	functionT
typedef std::shared_ptr< FunctionFunctorInterface< double, 3 > >	functorT
template<typename T >
using	future_to_ref_t = typename future_to_ref< T >::type
template<typename T , typename Archive >
using	has_freestanding_default_serialize_t = decltype(default_serialize(std::declval< Archive & >(), std::declval< T & >()))
template<typename T , typename Archive , typename = std::enable_if_t<std::is_pointer_v<T>>>
using	has_freestanding_default_serialize_with_size_t = decltype(default_serialize(std::declval< Archive & >(), std::declval< const T & >(), 1u))
template<typename T , typename Archive >
using	has_freestanding_serialize_t = decltype(serialize(std::declval< Archive & >(), std::declval< T & >()))
template<typename T , typename Archive , typename = std::enable_if_t<std::is_pointer_v<T>>>
using	has_freestanding_serialize_with_size_t = decltype(serialize(std::declval< Archive & >(), std::declval< T & >(), 1u))
template<typename T , typename Archive , typename = std::enable_if_t<!std::is_pointer_v<T>>>
using	has_freestanding_serialize_with_version_t = decltype(serialize(std::declval< Archive & >(), std::declval< T & >(), 0u))
template<typename T , typename Archive >
using	has_member_serialize_t = decltype(std::declval< T & >().serialize(std::declval< Archive & >()))
template<typename T , typename Archive >
using	has_member_serialize_with_version_t = decltype(std::declval< T & >().serialize(std::declval< Archive & >(), 0u))
template<typename T , typename Archive >
using	has_nonmember_load_t = decltype(madness::archive::ArchiveLoadImpl< Archive, T >::load(std::declval< Archive & >(), std::declval< T & >()))
template<typename T , typename Archive >
using	has_nonmember_serialize_t = decltype(madness::archive::ArchiveSerializeImpl< Archive, T >::serialize(std::declval< Archive & >(), std::declval< T & >()))
template<typename T , typename Archive >
using	has_nonmember_store_t = decltype(madness::archive::ArchiveStoreImpl< Archive, T >::store(std::declval< Archive & >(), std::declval< T & >()))
template<typename T , typename Archive >
using	has_nonmember_wrap_load_t = decltype(madness::archive::ArchiveImpl< Archive, T >::wrap_load(std::declval< Archive & >(), std::declval< T & >()))
template<typename T , typename Archive >
using	has_nonmember_wrap_store_t = decltype(madness::archive::ArchiveImpl< Archive, T >::wrap_store(std::declval< Archive & >(), std::declval< T & >()))
typedef std::size_t	hashT
	The hash value type. More...
template<typename T , std::size_t NDIM>
using	intermediateT = Pairs< Function< T, NDIM > >
	f12 and g12 intermediates of the form <f1|op|f2> (with op=f12 or op=g12) will be saved using the pair structure More...
template<typename T >
using	is_archive_defined_t = typename is_archive< std::remove_reference_t< std::remove_cv_t< T > >>::type
template<typename T >
using	is_input_archive_defined_t = typename is_input_archive< std::remove_reference_t< std::remove_cv_t< T > >>::type
template<typename T >
using	is_output_archive_defined_t = typename is_output_archive< std::remove_reference_t< std::remove_cv_t< T > >>::type
using	json = nlohmann::json
typedef int	Level
typedef NonlinearSolverND< 3 >	NonlinearSolver
typedef XNonlinearSolver< std::vector< Function< double, 3 > >, double, vector_function_allocator< double, 3 > >	NonlinearVectorSolver_3d
typedef XNonlinearSolver< std::vector< Function< double, 6 > >, double, vector_function_allocator< double, 6 > >	NonlinearVectorSolver_6d
typedef SeparatedConvolution< double, 3 >	operatorT
typedef std::pair< vecfuncT, vecfuncT >	pairvecfuncT
typedef std::shared_ptr< WorldDCPmapInterface< Key< 1 > > >	pmap_1d
typedef std::shared_ptr< WorldDCPmapInterface< Key< 2 > > >	pmap_2d
typedef std::shared_ptr< WorldDCPmapInterface< Key< 3 > > >	pmap_3d
typedef std::shared_ptr< WorldDCPmapInterface< Key< 4 > > >	pmap_4d
typedef std::shared_ptr< WorldDCPmapInterface< Key< 5 > > >	pmap_5d
typedef std::shared_ptr< WorldDCPmapInterface< Key< 6 > > >	pmap_6d
typedef std::shared_ptr< WorldDCPmapInterface< Key< 3 > > >	pmapT
typedef std::shared_ptr< operatorT>	poperatorT
typedef SeparatedConvolution< double, 1 >	real_convolution_1d
typedef std::shared_ptr< real_convolution_1d >	real_convolution_1d_ptr
typedef SeparatedConvolution< double, 2 >	real_convolution_2d
typedef std::shared_ptr< real_convolution_2d >	real_convolution_2d_ptr
typedef SeparatedConvolution< double, 3 >	real_convolution_3d
typedef std::shared_ptr< real_convolution_3d >	real_convolution_3d_ptr
typedef SeparatedConvolution< double, 4 >	real_convolution_4d
typedef std::shared_ptr< real_convolution_4d >	real_convolution_4d_ptr
typedef SeparatedConvolution< double, 5 >	real_convolution_5d
typedef std::shared_ptr< real_convolution_5d >	real_convolution_5d_ptr
typedef SeparatedConvolution< double, 6 >	real_convolution_6d
typedef std::shared_ptr< real_convolution_6d >	real_convolution_6d_ptr
typedef Derivative< double, 1 >	real_derivative_1d
typedef Derivative< double, 2 >	real_derivative_2d
typedef Derivative< double, 3 >	real_derivative_3d
typedef Derivative< double, 4 >	real_derivative_4d
typedef Derivative< double, 5 >	real_derivative_5d
typedef Derivative< double, 6 >	real_derivative_6d
typedef FunctionFactory< double, 1 >	real_factory_1d
typedef FunctionFactory< double, 2 >	real_factory_2d
typedef FunctionFactory< double, 3 >	real_factory_3d
typedef FunctionFactory< double, 4 >	real_factory_4d
typedef FunctionFactory< double, 5 >	real_factory_5d
typedef FunctionFactory< double, 6 >	real_factory_6d
typedef FunctionImpl< double, 1 >	real_funcimpl_1d
typedef FunctionImpl< double, 2 >	real_funcimpl_2d
typedef FunctionImpl< double, 3 >	real_funcimpl_3d
typedef FunctionImpl< double, 4 >	real_funcimpl_4d
typedef FunctionImpl< double, 5 >	real_funcimpl_5d
typedef FunctionImpl< double, 6 >	real_funcimpl_6d
typedef Function< double, 1 >	real_function_1d
typedef Function< double, 2 >	real_function_2d
typedef Function< double, 3 >	real_function_3d
typedef Function< double, 4 >	real_function_4d
typedef Function< double, 5 >	real_function_5d
typedef Function< double, 6 >	real_function_6d
typedef std::shared_ptr< FunctionFunctorInterface< double, 1 > >	real_functor_1d
typedef std::shared_ptr< FunctionFunctorInterface< double, 2 > >	real_functor_2d
typedef std::shared_ptr< FunctionFunctorInterface< double, 3 > >	real_functor_3d
typedef std::shared_ptr< FunctionFunctorInterface< double, 4 > >	real_functor_4d
typedef std::shared_ptr< FunctionFunctorInterface< double, 5 > >	real_functor_5d
typedef std::shared_ptr< FunctionFunctorInterface< double, 6 > >	real_functor_6d
typedef Tensor< double >	real_tensor
typedef std::ptrdiff_t	rel_fn_ptr_t
template<typename T >
using	remove_fcvr_t = typename remove_fcvr< T >::type
template<typename T >
using	remove_future_t = typename remove_future< T >::type
	C++11 version of REMFUTURE. More...
typedef std::vector< vector_real_function_3d >	response_matrix
typedef void(*	rmi_handlerT) (void *buf, size_t nbyte)
	This is the generic low-level interface for a message handler. More...
typedef Mutex	SCALABLE_MUTEX_TYPE
typedef Mutex	SPINLOCK_TYPE
typedef tbb::split	Split
	Dummy class, a la Intel TBB, used to distinguish splitting constructor. More...
typedef std::vector< pairvecfuncT >	subspaceT
typedef Tensor< double_complex >	tensor_complex
typedef Tensor< double >	tensor_real
typedef Tensor< double >	tensorT
typedef int64_t	Translation
typedef vector< functionT >	vecfuncT
typedef std::vector< std::complex< double > >	vector_complex
typedef std::vector< complex_function_1d >	vector_complex_function_1d
typedef std::vector< complex_function_2d >	vector_complex_function_2d
typedef std::vector< complex_function_3d >	vector_complex_function_3d
typedef std::vector< complex_function_4d >	vector_complex_function_4d
typedef std::vector< complex_function_5d >	vector_complex_function_5d
typedef std::vector< complex_function_6d >	vector_complex_function_6d
typedef std::vector< Vector< double, 1 > >	vector_coord_1d
typedef std::vector< Vector< double, 2 > >	vector_coord_2d
typedef std::vector< Vector< double, 3 > >	vector_coord_3d
typedef std::vector< Vector< double, 4 > >	vector_coord_4d
typedef std::vector< Vector< double, 5 > >	vector_coord_5d
typedef std::vector< Vector< double, 6 > >	vector_coord_6d
typedef std::vector< double >	vector_real
typedef std::vector< real_function_1d >	vector_real_function_1d
typedef std::vector< real_function_2d >	vector_real_function_2d
typedef std::vector< real_function_3d >	vector_real_function_3d
typedef std::vector< real_function_4d >	vector_real_function_4d
typedef std::vector< real_function_5d >	vector_real_function_5d
typedef std::vector< real_function_6d >	vector_real_function_6d

Enumerations
enum	BCType {   BC_ZERO , BC_PERIODIC , BC_FREE , BC_DIRICHLET ,   BC_ZERONEUMANN , BC_NEUMANN }
enum	CalcType {   CT_UNDEFINED , CT_MP2 , CT_MP3 , CT_CC2 ,   CT_LRCCS , CT_LRCC2 , CT_CISPD , CT_ADC2 ,   CT_TDHF , CT_TEST }
	Calculation Types used by CC2. More...
enum	CCState { CCSTATE_UNDEFINED , GROUND_STATE , EXCITED_STATE }
	Type of Pairs used by CC_Pair2 class. More...
enum	EnergyType { PROJECTED_ENERGYTYPE , HYLLERAAS_ENERGYTYPE , UNKNOWN_ENERGYTYPE }
enum	FuncType {   UNDEFINED , HOLE , PARTICLE , MIXED ,   RESPONSE }
enum	GuessType {   PARTIAL_WAVE_GUESSTYPE , FROM_FILE_GUESSTYPE , PREDEFINED_GUESSTYPE , SCF_GUESSTYPE ,   EXOP_GUESSTYPE , EMPTY_GUESSTYPE , PSI4_GUESSTYPE , UNKNOWN_GUESSTYPE }
enum	OpType {   OT_UNDEFINED , OT_ONE , OT_G12 , OT_SLATER ,   OT_GAUSS , OT_F12 , OT_FG12 , OT_F212 ,   OT_F2G12 , OT_BSH , OT_SIZE }
	operator types More...
enum	PairType {   MP2_PAIRTYPE , CISPD_PAIRTYPE , ALL_PAIRTYPE , NONE_PAIRTYPE ,   UNKNOWN_PAIRTYPE }
enum	PotentialType {   POT_UNDEFINED , POT_F3D_ , POT_s3a_ , POT_s3b_ ,   POT_s3c_ , POT_s5a_ , POT_s5b_ , POT_s5c_ ,   POT_s2b_ , POT_s2c_ , POT_s4a_ , POT_s4b_ ,   POT_s4c_ , POT_s6_ , POT_ccs_ , POT_cis_ ,   POT_singles_ }
	CC2 Singles Potentials. More...
enum	TensorType { TT_FULL , TT_2D , TT_TENSORTRAIN }
	low rank representations of tensors (see gentensor.h) More...
enum	ThreadTag { ThreadTag_NonMADNESS = 0b0000 , ThreadTag_MADNESS = 0b0001 , ThreadTag_Main = 0b0010 }
	bitfield describing thread type More...
enum	TreeState {   reconstructed , compressed , nonstandard , nonstandard_with_leaves ,   nonstandard_after_apply , redundant , redundant_after_merge , on_demand ,   unknown }
enum class	WaitPolicy { Busy = 1 , Yield , Sleep }
	wait policies supported by ConditionVariable/DQueue/ThreadPool More...

Functions
static const Slice	_ (0,-1, 1)
static const Slice	_reverse (-1, 0,-1)
	Entire tensor. More...
template<std::size_t NDIM>
Function< double, NDIM >	abs (const Function< double_complex, NDIM > &z, bool fence=true)
	Returns a new function that is the absolute value of the input. More...
template<typename Q , int NDIM>
Function< typename TensorTypeData< Q >::scalar_type, NDIM >	abs (const Function< Q, NDIM > &func)
template<typename T , std::size_t NDIM>
Function< T, NDIM >	abs (const Function< T, NDIM > &f, bool fence=true)
	Create a new function that is the abs of f - global comm only if not reconstructed. More...
template<class T >
Tensor< typename Tensor< T >::scalar_type >	abs (const Tensor< T > &t)
	Return a new tensor holding the absolute value of each element of t. More...
double	abs (double x)
template<typename Q , int NDIM>
Function< typename TensorTypeData< Q >::scalar_type, NDIM >	abs_square (const Function< Q, NDIM > &func)
template<typename T , std::size_t NDIM>
std::enable_if<!TensorTypeData< T >::iscomplex, Function< T, NDIM > >::type	abs_square (const Function< T, NDIM > &f, bool fence=true)
	Create a new function that is the abs_square of f - global comm only if not reconstructed. More...
template<typename T , std::size_t NDIM>
std::enable_if< TensorTypeData< T >::iscomplex, Function< typename Tensor< T >::scalar_type, NDIM > >::type	abs_square (const Function< T, NDIM > &f, bool fence=true)
	Create a new function that is the abs_square of f - global comm only if not reconstructed. More...
template<std::size_t NDIM>
Function< double, NDIM >	abssq (const Function< double_complex, NDIM > &z, bool fence=true)
	Returns a new function that is the square of the absolute value of the input. More...
template<typename T , std::size_t NDIM>
std::vector< Function< typename Tensor< T >::scalar_type, NDIM > >	abssq (World &world, const std::vector< Function< T, NDIM > > &v, bool fence=true)
	Computes the square of a vector of functions — q[i] = abs(v[i])**2. More...
template<typename L , typename R , std::size_t NDIM>
Function< TENSOR_RESULT_TYPE(L, R), NDIM >	add (const Function< L, NDIM > &left, const Function< R, NDIM > &right, bool fence=true)
	Same as operator+ but with optional fence and no automatic compression. More...
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	add (World &world, const Function< T, NDIM > &a, const std::vector< Function< R, NDIM > > &b, bool fence=true)
	Returns new vector of functions — q[i] = a + b[i]. More...
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	add (World &world, const Function< T, NDIM > &a, const std::vector< Function< R, NDIM > > &b, bool fence=true, unsigned int blk=1)
	Returns new vector of functions — q[i] = a + b[i]. More...
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	add (World &world, const std::vector< Function< R, NDIM > > &b, const Function< T, NDIM > &a, bool fence=true)
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	add (World &world, const std::vector< Function< R, NDIM > > &b, const Function< T, NDIM > &a, bool fence=true, unsigned int blk=1)
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	add (World &world, const std::vector< Function< T, NDIM > > &a, const std::vector< Function< R, NDIM > > &b, bool fence=true)
	Returns new vector of functions — q[i] = a[i] + b[i]. More...
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	add (World &world, const std::vector< Function< T, NDIM > > &a, const std::vector< Function< R, NDIM > > &b, bool fence=true, unsigned int blk=1)
	Returns new vector of functions — q[i] = a[i] + b[i]. More...
template<typename funcT >
funcT::returnT	adq (double lo, double hi, const funcT &func, double thresh)
template<typename funcT >
funcT::returnT	adq1 (double lo, double hi, const funcT &func, double thresh, int n, const double *x, const double *w, int level)
void	aligned_add (long n, double *MADNESS_RESTRICT a, const double *MADNESS_RESTRICT b)
void	aligned_add (long n, double_complex *MADNESS_RESTRICT a, const double_complex *MADNESS_RESTRICT b)
template<typename T , typename Q >
static void	aligned_add (long n, T *MADNESS_RESTRICT a, const Q *MADNESS_RESTRICT b)
template<>
void	aligned_axpy (long n, double *MADNESS_RESTRICT a, const double *MADNESS_RESTRICT b, double s)
template<>
void	aligned_axpy (long n, double_complex *MADNESS_RESTRICT a, const double_complex *MADNESS_RESTRICT b, double s)
template<>
void	aligned_axpy (long n, double_complex *MADNESS_RESTRICT a, const double_complex *MADNESS_RESTRICT b, double_complex s)
template<typename T , typename Q >
static void	aligned_axpy (long n, T *MADNESS_RESTRICT a, const T *MADNESS_RESTRICT b, Q s)
void	aligned_sub (long n, double *MADNESS_RESTRICT a, const double *MADNESS_RESTRICT b)
void	aligned_sub (long n, double_complex *MADNESS_RESTRICT a, const double_complex *MADNESS_RESTRICT b)
template<typename T , typename Q >
static void	aligned_sub (long n, T *MADNESS_RESTRICT a, const Q *MADNESS_RESTRICT b)
template<typename T >
static void	aligned_zero (long n, T *a)
AmArg *	alloc_am_arg (std::size_t nbyte)
	Allocates a new AmArg with nbytes of user data ... delete with free_am_arg. More...
static double	analytical_slater_functor (double rho)
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	append (const std::vector< Function< T, NDIM > > &lhs, const std::vector< Function< T, NDIM > > &rhs)
	combine two vectors More...
complex_functionT	APPLY (const complex_operatorT *q1d, const complex_functionT &psi)
template<typename T , std::size_t NDIM>
Function< T, NDIM >	apply (const Derivative< T, NDIM > &D, const Function< T, NDIM > &f, bool fence=true)
	Applies derivative operator to function (for syntactic equivalence to integral operator apply) More...
template<typename opT , typename R , std::size_t NDIM>
Function< TENSOR_RESULT_TYPE(typename opT::opT, R), NDIM >	apply (const opT &op, const Function< R, NDIM > &f, bool fence=true)
	Apply operator in non-standard form. More...
template<typename opT , typename T , std::size_t LDIM>
Function< TENSOR_RESULT_TYPE(typename opT::opT, T), LDIM+LDIM >	apply (const opT &op, const std::vector< Function< T, LDIM >> &f1, const std::vector< Function< T, LDIM >> &f2, bool fence=true)
	Apply operator on a hartree product of two low-dimensional functions. More...
template<typename T , std::size_t NDIM>
CCPairFunction< T, NDIM >	apply (const ProjectorBase &projector, const CCPairFunction< T, NDIM > &argument)
template<typename T , std::size_t NDIM>
std::vector< CCPairFunction< T, NDIM > >	apply (const ProjectorBase &projector, const std::vector< CCPairFunction< T, NDIM >> &argument)
	apply the projector on the argument function, potentially yielding a vector of CCPairfunctions as result More...
template<typename T , typename R , std::size_t NDIM, std::size_t KDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	apply (const SeparatedConvolution< T, KDIM > &op, const std::vector< Function< R, NDIM > > f)
	Applies an operator to a vector of functions — q[i] = apply(op,f[i]) More...
template<typename T , std::size_t NDIM>
CCPairFunction< T, NDIM >	apply (const SeparatedConvolution< T, NDIM > &G, const CCPairFunction< T, NDIM > &argument)
	apply the operator on a CCPairfunction, both with the same dimension More...
template<typename T , std::size_t NDIM>
CCPairFunction< T, NDIM >	apply (const SeparatedConvolution< T, NDIM > &G, const std::vector< CCPairFunction< T, NDIM >> &argument)
template<typename T , std::size_t NDIM>
std::vector< CCPairFunction< T, NDIM > >	apply (const SeparatedConvolution< T, NDIM > &op, const std::vector< CCPairFunction< T, NDIM >> &argument)
template<typename T , std::size_t NDIM>
CCPairFunction< T, NDIM >	apply (const SeparatedConvolution< T, NDIM/2 > &op, const CCPairFunction< T, NDIM > &arg)
	apply the operator to the argument More...
template<typename T , std::size_t NDIM>
std::vector< CCPairFunction< T, NDIM > >	apply (const SeparatedConvolution< T, NDIM/2 > &op, const std::vector< CCPairFunction< T, NDIM >> &argument)
	apply the operator to the argument More...
template<class T , class Q >
TensorTrain< TENSOR_RESULT_TYPE(T, Q)>	apply (const TensorTrain< T > &op, const TensorTrain< Q > &t, const double thresh)
	apply an operator in TT format on a tensor in TT format More...
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	apply (World &world, const Derivative< T, NDIM > &D, const std::vector< Function< T, NDIM > > &v, bool fence=true)
	Applies a derivative operator to a vector of functions. More...
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	apply (World &world, const Derivative< T, NDIM > &D, const std::vector< Function< T, NDIM > > &v, const unsigned int blk=1, const bool fence=true)
	Applies a derivative operator to a vector of functions. More...
template<typename T , typename R , std::size_t NDIM, std::size_t KDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	apply (World &world, const SeparatedConvolution< T, KDIM > &op, const std::vector< Function< R, NDIM > > f)
	Applies an operator to a vector of functions — q[i] = apply(op,f[i]) More...
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	apply (World &world, const SeparatedConvolution< T, NDIM > &op, const std::vector< Function< R, NDIM > > f, const unsigned int blk=1)
	Applies an operator to a vector of functions — q[i] = apply(op,f[i]) More...
template<typename opT , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(typename opT::opT, R), NDIM > >	apply (World &world, const std::vector< std::shared_ptr< opT > > &op, const std::vector< Function< R, NDIM > > f)
	Applies a vector of operators to a vector of functions — q[i] = apply(op[i],f[i]) More...
template<typename opT , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(typename opT::opT, R), NDIM > >	apply (World &world, const std::vector< std::shared_ptr< opT > > &op, const std::vector< Function< R, NDIM > > f, const unsigned int blk=1)
	Applies a vector of operators to a vector of functions — q[i] = apply(op[i],f[i]) More...
response_space	apply (World &world, real_derivative_3d &op, response_space &f)
response_space	apply (World &world, std::vector< std::shared_ptr< real_convolution_3d >> &op, response_space &f)
response_space	apply (World &world, std::vector< std::vector< std::shared_ptr< real_convolution_3d >>> &op, response_space &f)
template<typename opT , typename R , std::size_t NDIM>
Function< TENSOR_RESULT_TYPE(typename opT::opT, R), NDIM >	apply_1d_realspace_push (const opT &op, const Function< R, NDIM > &f, int axis, bool fence=true)
template<typename opT , typename R , std::size_t NDIM>
Function< TENSOR_RESULT_TYPE(typename opT::opT, R), NDIM >	apply_only (const opT &op, const Function< R, NDIM > &f, bool fence=true)
	Apply operator ONLY in non-standard form - required other steps missing !! More...
template<class T >
Tensor< typename Tensor< T >::scalar_type >	arg (const Tensor< T > &t)
	Return a new tensor holding the argument of each element of t (complex types only) More...
CalcType	assign_calctype (const std::string name)
	Assigns enum to string. More...
std::string	assign_name (const CalcType &inp)
	Assigns strings to enums for formated output. More...
std::string	assign_name (const CCState &input)
	Assigns strings to enums for formated output. More...
std::string	assign_name (const FuncType &inp)
	Assigns strings to enums for formated output. More...
std::string	assign_name (const PotentialType &inp)
	Assigns strings to enums for formated output. More...
std::string	atomic_number_to_symbol (const unsigned int atomic_number)
	return the lower-case element symbol corresponding to the atomic number More...
bool	autoc (int k, Tensor< double > *c)
	Return the autocorrelation coefficients for scaling functions of given order. More...
void	bandlimited_propagator_plot ()
void	begin_papi_measurement ()
void	bgq_mtxmq_padded (long dimi, long dimj, long dimk, long extb, __complex__ double *c_x, const __complex__ double *a_x, const __complex__ double *b_x)
void	bgq_mtxmq_padded (long dimi, long dimj, long dimk, long extb, __complex__ double *c_x, const __complex__ double *a_x, const double *b_x)
void	bgq_mtxmq_padded (long dimi, long dimj, long dimk, long extb, __complex__ double *c_x, const double *a_x, const __complex__ double *b_x)
void	bgq_mtxmq_padded (long dimi, long dimj, long dimk, long extb, double *c_x, const double *a_x, const double *b_x)
template<typename L , typename R , typename opT , std::size_t NDIM>
Function< TENSOR_RESULT_TYPE(L, R), NDIM >	binary_op (const Function< L, NDIM > &left, const Function< R, NDIM > &right, const opT &op, bool fence=true)
	Generate new function = op(left,right) where op acts on the function values. More...
template<std::size_t NDIM>
static SeparatedConvolution< double, NDIM >	BSHOperator (World &world, double mu, double lo, double eps, const BoundaryConditions< NDIM > &bc=FunctionDefaults< NDIM >::get_bc(), int k=FunctionDefaults< NDIM >::get_k())
	Factory function generating separated kernel for convolution with BSH kernel in general NDIM. More...
static SeparatedConvolution< double, 3 >	BSHOperator3D (World &world, double mu, double lo, double eps, const BoundaryConditions< 3 > &bc=FunctionDefaults< 3 >::get_bc(), int k=FunctionDefaults< 3 >::get_k())
	Factory function generating separated kernel for convolution with exp(-mu*r)/(4*pi*r) in 3D. More...
template<std::size_t NDIM>
static SeparatedConvolution< double, NDIM > *	BSHOperatorPtr (World &world, double mu, double lo, double eps, const BoundaryConditions< NDIM > &bc=FunctionDefaults< NDIM >::get_bc(), int k=FunctionDefaults< NDIM >::get_k())
	Factory function generating separated kernel for convolution with BSH kernel in general NDIM. More...
static SeparatedConvolution< double, 3 > *	BSHOperatorPtr3D (World &world, double mu, double lo, double eps, const BoundaryConditions< 3 > &bc=FunctionDefaults< 3 >::get_bc(), int k=FunctionDefaults< 3 >::get_k())
	Factory function generating separated kernel for convolution with exp(-mu*r)/(4*pi*r) in 3D. More...
int	c_rks_vwn5__ (const double *r__, double *f, double *dfdra)
int	c_uks_vwn5__ (double *ra, double *rb, double *f, double *dfdra, double *dfdrb)
template<typename T , std::size_t NDIM>
std::shared_ptr< CCConvolutionOperator< T, NDIM > >	CCConvolutionOperatorPtr (World &world, const OpType type, typename CCConvolutionOperator< T, NDIM >::Parameters param)
template<typename T >
void	change_tensor_type (GenTensor< T > &t, const TensorArgs &targs)
	change representation to targ.tt More...
template<typename T , std::size_t NDIM>
const std::vector< Function< T, NDIM > > &	change_tree_state (const std::vector< Function< T, NDIM >> &v, const TreeState finalstate, const bool fence=true)
	change tree state of the functions More...
template<typename T >
static std::enable_if< std::is_floating_point< T >::value, void >::type	check_for_inf (const std::string &str, T &arg)
template<typename T >
static std::enable_if<!std::is_floating_point< T >::value, void >::type	check_for_inf (const std::string &str, T &arg)
bool	check_if_pseudo_atom (const std::string &symbol)
template<typename C >
void	check_linear_dependence (const Tensor< C > &Q, Tensor< C > &c, const double rcondtol, const double cabsmax, bool do_print=true)
	check for subspace linear dependency More...
unsigned long	checksum_file (const char *filename)
	Simple checksum for ASCII characters in file. More...
template<>
void	cholesky (char uplo, integer n, complex_real4 *A, integer lda)
template<>
void	cholesky (char uplo, integer n, complex_real8 *A, integer lda)
template<>
void	cholesky (char uplo, integer n, real4 *A, integer lda)
template<>
void	cholesky (char uplo, integer n, real8 *A, integer lda)
template<typename T >
void	cholesky (char uplo, integer n, T *A, integer lda)
	Compute the Cholesky Factorization via LAPACK. More...
template void	cholesky (Tensor< double > &A)
template void	cholesky (Tensor< double_complex > &A)
template<typename T >
void	cholesky (Tensor< T > &A)
	Compute the Cholesky factorization. More...
template<typename T >
DistributedMatrix< T >	column_distributed_matrix (World &world, int64_t n, int64_t m, int64_t coltile=0)
	Generates an (n,m) matrix distributed by columns (row dimension is not distributed) More...
static DistributedMatrixDistribution	column_distributed_matrix_distribution (World &world, int64_t n, int64_t m, int64_t coltile)
	Generates distribution for an (n,m) matrix distributed by columns (row dimension is not distributed) More...
template<typename T , std::size_t NDIM>
const std::vector< Function< T, NDIM > > &	compress (const std::vector< Function< T, NDIM > > &v)
	compress a vector of functions More...
template<typename T , std::size_t NDIM>
void	compress (World &world, const std::vector< Function< T, NDIM > > &v, bool fence=true)
	Compress a vector of functions. More...
template<typename T , std::size_t NDIM>
void	compress (World &world, const std::vector< Function< T, NDIM > > &v, unsigned int blk=1, bool fence=true)
	Compress a vector of functions. More...
template<typename T >
DistributedMatrix< T >	concatenate_columns (const DistributedMatrix< T > &a, const DistributedMatrix< T > &b)
	Generates a row-distributed matrix with rows of a and b contatenated. More...
template<typename T >
DistributedMatrix< T >	concatenate_rows (const DistributedMatrix< T > &a, const DistributedMatrix< T > &b)
	Generates a column-distributed matrix with rows of a and b contatenated. More...
template<typename T >
DistributedMatrix< T >	concatenate_rows (const DistributedMatrix< T > &a, const DistributedMatrix< T > &b, const DistributedMatrix< T > &c, const DistributedMatrix< T > &d)
	Generates a column-distributed matrix with rows of a, b, c, and d contatenated in order. More...
template<typename Q >
Q	conditional_conj (const Q &coeff)
	For real types return value, for complex return conjugate. More...
template<typename T , std::size_t NDIM>
Function< T, NDIM >	conj (const Function< T, NDIM > &f, bool fence=true)
	Return the complex conjugate of the input function with the same distribution and optional fence. More...
template<class T >
Tensor< T >	conj (const Tensor< T > &t)
	Returns a new deep copy of the complex conjugate of the input tensor (complex types only) More...
double	conj (double x)
double	conj (float x)
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	conj (World &world, const std::vector< Function< T, NDIM > > &v, bool fence=true)
	Returns the complex conjugate of the vector of functions. More...
template<class T >
Tensor< T >	conj_transpose (const Tensor< T > &t)
	Returns a new deep copy of the complex conjugate transpose of the input tensor. More...
template<typename T , typename Q , std::size_t NDIM>
Function< Q, NDIM >	convert (const Function< T, NDIM > &f, bool fence=true)
	Type conversion implies a deep copy. No communication except for optional fence. More...
template<class Q , class T >
GenTensor< Q >	convert (const GenTensor< T > &other)
	type conversion implies a deep copy More...
template<class Q , class T >
Tensor< Q >	convert (const Tensor< T > &t)
	Returns a new contiguous tensor of type Q that is a deep copy of the input. More...
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< R, NDIM > >	convert (World &world, const std::vector< Function< T, NDIM > > &v, bool fence=true)
	Returns a deep copy of a vector of functions. More...
template<typename T >
DistributedMatrix< T >	copy (const DistributedMatrix< T > &A)
	Deep copy of content. More...
template<typename T , std::size_t NDIM>
Function< T, NDIM >	copy (const Function< T, NDIM > &f, bool fence=true)
	Create a new copy of the function with the same distribution and optional fence. More...
template<typename T , std::size_t NDIM>
Function< T, NDIM >	copy (const Function< T, NDIM > &f, const std::shared_ptr< WorldDCPmapInterface< Key< NDIM > > > &pmap, bool fence=true)
	Create a new copy of the function with different distribution and optional fence. More...
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	copy (const std::vector< Function< T, NDIM > > &v, bool fence=true)
	Returns a deep copy of a vector of functions. More...
template<class T >
Tensor< T >	copy (const Tensor< T > &t)
	Returns a new contiguous tensor that is a deep copy of the input. More...
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	copy (World &world, const Function< T, NDIM > &v, const unsigned int n, bool fence=true)
	Returns a vector of n deep copies of a function. More...
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	copy (World &world, const std::vector< Function< T, NDIM > > &v, bool fence=true)
	Returns a deep copy of a vector of functions. More...
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	copy (World &world, const std::vector< Function< T, NDIM >> &v, const std::shared_ptr< WorldDCPmapInterface< Key< NDIM >>> &pmap, bool fence=true)
	Returns a deep copy of a vector of functions. More...
template<typename T >
static void	copy_2d_patch (T *MADNESS_RESTRICT out, long ldout, const T *MADNESS_RESTRICT in, long ldin, long n, long m)
AmArg *	copy_am_arg (const AmArg &arg)
static SeparatedConvolution< double, 3 >	CoulombOperator (World &world, double lo, double eps, const BoundaryConditions< 3 > &bc=FunctionDefaults< 3 >::get_bc(), int k=FunctionDefaults< 3 >::get_k())
	Factory function generating separated kernel for convolution with 1/r in 3D. More...
static SeparatedConvolution< double, 3 > *	CoulombOperatorPtr (World &world, double lo, double eps, const BoundaryConditions< 3 > &bc=FunctionDefaults< 3 >::get_bc(), int k=FunctionDefaults< 3 >::get_k())
	Factory function generating separated kernel for convolution with 1/r in 3D. More...
double	cpu_frequency ()
	Estimate the processor frequency, in Hz. More...
void	cpu_relax ()
	Do nothing and especially do not touch memory. More...
static double	cpu_time ()
	Returns the cpu time in seconds relative to an arbitrary origin. More...
std::shared_ptr< NuclearCorrelationFactor >	create_nuclear_correlation_factor (World &world, const Molecule &molecule, const std::shared_ptr< PotentialManager > pm, const std::pair< std::string, double > &ncf)
std::shared_ptr< NuclearCorrelationFactor >	create_nuclear_correlation_factor (World &world, const Molecule &molecule, const std::shared_ptr< PotentialManager > potentialmanager, const std::string inputline)
	create and return a new nuclear correlation factor More...
auto	create_response_matrix (const size_t &num_states, const size_t &num_orbitals) -> response_matrix
	Create a response matrix object. More...
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	cross (const std::vector< Function< T, NDIM > > &f, const std::vector< Function< R, NDIM > > &g, bool do_refine=false, bool fence=true)
	shorthand cross operator More...
template<typename T , std::size_t N>
std::enable_if< N==3, Vector< T, N > >::type	cross (const Vector< T, N > &l, const Vector< T, N > &r)
	compute the cross product two Vectors of dimension 3 More...
std::uint64_t	cstr_to_memory_size (const char *str)
	Unit-aware conversion of a C string to a size_t. More...
std::vector< std::string >	cubefile_header (std::string filename="input", const bool &no_orient=false)
static uint64_t	cycle_count ()
	On some machines we have access to a cycle count. More...
double	d2smoothed_potential (double r)
	second radial derivative of the regularized 1/r potential More...
template<typename ... Ts>
constexpr auto	decay_types (std::tuple< Ts... > const &) -> std::tuple< std::remove_cv_t< std::remove_reference_t< Ts >>... >
template<size_t NDIM>
Key< NDIM >	displacement (const Key< NDIM > &source, const Key< NDIM > &target)
	given a source and a target, return the displacement in translation More...
double	distance (const Fred &a, const Fred &b)
double	distance (double a, double b)
	Default function for computing the distance between two doubles. More...
static double	distance (double x1, double y1, double z1, double x2, double y2, double z2)
double	distance (madness::Function< std::complex< double >, 1ul > &a, madness::Function< std::complex< double >, 1ul > &b)
template<typename T >
double	distance (std::complex< T > &a, std::complex< T > &b)
	Default function for computing the distance between two complex numbers. More...
static double	distance_sq (double x1, double y1, double z1, double x2, double y2, double z2)
DistributedMatrix< double >	distributed_localize_PM (World &world, const std::vector< Function< double, 3 >> &mo, const std::vector< Function< double, 3 >> &ao, const std::vector< int > &set, const std::vector< int > &at_to_bf, const std::vector< int > &at_nbf, const double thresh=1e-9, const double thetamax=0.5, const bool randomize=true, const bool doprint=false)
DistributedMatrix< double >	distributed_localize_PM (World &world, const vecfuncT &mo, const vecfuncT &ao, const std::vector< int > &set, const std::vector< int > &at_to_bf, const std::vector< int > &at_nbf, const double thresh, const double thetamax, const bool randomize, const bool doprint)
template<typename T , std::size_t NDIM>
Function< T, NDIM >	div (const std::vector< Function< T, NDIM > > &v, bool do_refine=false, bool fence=true)
	shorthand div operator More...
template<typename funcT >
funcT::returnT	do_adq (double lo, double hi, const funcT &func, int n, const double *x, const double *w)
void	do_response_density_vtk_plots (World &world, int npt_plot, double L, const Molecule &molecule, const real_function_3d &ground_density, const vector_real_function_3d &response_density)
void	do_response_orbital_vtk_plots (World &world, int npt_plot, double L, const Molecule &molecule, const vector_real_function_3d &ground_orbs, const response_matrix &responseMatrix)
void	do_vtk_plots (World &world, int npt_plot, double L, int lowest_orbital, int highest_orbital, const Molecule &molecule, std::vector< real_function_3d > densities, const std::string &name)
void	do_vtk_plots (World &world, int npt_plot, double L, Molecule molecule, real_function_3d &rho_0, std::vector< real_function_3d > &rho_omega, std::vector< real_function_3d > &ground_orbitals, X_space &Chi)
template<typename T , typename R , std::size_t NDIM>
Function< TENSOR_RESULT_TYPE(T, R), NDIM >	dot (World &world, const std::vector< Function< T, NDIM > > &a, const std::vector< Function< R, NDIM > > &b, bool fence=true)
	Multiplies and sums two vectors of functions r = \sum_i a[i] * b[i]. More...
	DPEC (double, double, double)
	DPEC (double_complex, double_complex, double_complex)
	DPEC (float, float, float)
	DPEC (float_complex, float_complex, float_complex)
	DPEC (int, int, int)
	DPEC (long, long, long)
void	drot (long n, double *MADNESS_RESTRICT a, double *MADNESS_RESTRICT b, double s, double c, long inc)
	Simple (?) version of BLAS-1 DROT(N, DX, INCX, DY, INCY, DC, DS) More...
double	dsmoothed_potential (double r)
	Derivative of the regularized 1/r potential. More...
static void	dxprintvalue (FILE *f, const double t)
static void	dxprintvalue (FILE *f, const double_complex &t)
void	end_papi_measurement ()
static void	END_TIMER (World &world, const char *msg)
static bool	enforce_bc (bool is_periodic, Level n, Translation &l)
void	error (const char *msg)
template<typename T >
static void	error (const char *msg, const T &data)
	Prints an error message, along with some data, and aborts the program. More...
double	estimate_area (double x)
void	exception_break (bool message)
	This function is executed just before a MadnessException is thrown. More...
template<typename T >
int	exchange_anchor_test (World &world, Exchange< T, 3 > &K, const double thresh)
	anchor test for the exchange operator – partially hardwired More...
static SeparatedConvolution< double, 3 >	F2GOperator (World &world, double mu, double lo, double eps, const BoundaryConditions< 3 > &bc=FunctionDefaults< 3 >::get_bc(), int k=FunctionDefaults< 3 >::get_k())
	Factory function generating separated kernel for convolution with (1/(2 mu)*(1 - exp(-mu*r)))^2/r in 3D. More...
static SeparatedConvolution< double, 3 > *	F2GOperatorPtr (World &world, double mu, double lo, double eps, const BoundaryConditions< 3 > &bc=FunctionDefaults< 3 >::get_bc(), int k=FunctionDefaults< 3 >::get_k())
	Factory function generating separated kernel for convolution with (1/(2 mu)*(1 - exp(-mu*r)))^2/r in 3D. More...
template<class T , class Q >
Tensor< TENSOR_RESULT_TYPE(T, Q) > &	fast_transform (const Tensor< T > &t, const Tensor< Q > &c, Tensor< TENSOR_RESULT_TYPE(T, Q) > &result, Tensor< TENSOR_RESULT_TYPE(T, Q) > &workspace)
	Restricted but heavily optimized form of transform() More...
template<typename T >
void	fast_transpose (long n, long m, const T *a, T *MADNESS_RESTRICT b)
	a(n,m) --> b(m,n) ... optimized for smallish matrices More...
template<typename T , std::size_t NDIM>
Tensor< T >	fcube (const Key< NDIM > &, T(*f)(const Vector< double, NDIM > &), const Tensor< double > &)
template<typename T , std::size_t NDIM>
Tensor< T >	fcube (const Key< NDIM > &key, const FunctionFunctorInterface< T, NDIM > &f, const Tensor< double > &qx)
template<typename T , std::size_t NDIM>
void	fcube (const Key< NDIM > &key, const FunctionFunctorInterface< T, NDIM > &f, const Tensor< double > &qx, Tensor< T > &fval)
	forward declaration More...
static SeparatedConvolution< double, 3 >	FGOperator (World &world, double mu, double lo, double eps, const BoundaryConditions< 3 > &bc=FunctionDefaults< 3 >::get_bc(), int k=FunctionDefaults< 3 >::get_k())
	Factory function generating separated kernel for convolution with 1/(2 mu)*(1 - exp(-mu*r))/r in 3D. More...
static SeparatedConvolution< double, 3 > *	FGOperatorPtr (World &world, double mu, double lo, double eps, const BoundaryConditions< 3 > &bc=FunctionDefaults< 3 >::get_bc(), int k=FunctionDefaults< 3 >::get_k())
	Factory function generating separated kernel for convolution with 1/(2 mu)*(1 - exp(-mu*r))/r in 3D. More...
void	finalize ()
	Call this once at the very end of your main program instead of MPI_Finalize(). More...
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	flatten (const std::vector< std::vector< Function< T, NDIM > > > &vv)
template<std::size_t NDIM, typename objT >
void	foreach_child (const Key< NDIM > &parent, objT *obj, void(objT::*memfun)(const Key< NDIM > &))
	Applies member function of obj to each child key of parent. More...
template<std::size_t NDIM, typename opT >
void	foreach_child (const Key< NDIM > &parent, opT &op)
	Applies op(key) to each child key of parent. More...
void	free_am_arg (AmArg *arg)
	Frees an AmArg allocated with alloc_am_arg. More...
template<typename T , std::size_t NDIM>
Derivative< T, NDIM >	free_space_derivative (World &world, int axis, int k=FunctionDefaults< NDIM >::get_k())
	Convenience function returning derivative operator with free-space boundary conditions. More...
void	from_json (const nlohmann::json &, ResponseParameters &p)
std::shared_ptr< FunctionFunctorInterface< double, 3 > >	func (new opT(g))
template<typename Q , int NDIM>
Function< std::complex< Q >, NDIM >	function_real2complex (const Function< Q, NDIM > &r)
static double	functor_r2 (const coord_3d &r)
static double	functor_x (const coord_3d &r)
static double	functor_y (const coord_3d &r)
template<typename T >
std::vector< Future< T > >	future_vector_factory (std::size_t n)
	Factory for a vectors of futures. More...
bool	gauss_legendre (int n, double xlo, double xhi, double *x, double *w)
bool	gauss_legendre_numeric (int n, double xlo, double xhi, double *x, double *w)
	Compute the Gauss-Legendre quadrature points and weights. More...
bool	gauss_legendre_test (bool print)
template<std::size_t NDIM>
static SeparatedConvolution< double, NDIM >	GaussOperator (World &world, double mu, double lo=0.0, double eps=0.0, const BoundaryConditions< NDIM > &bc=FunctionDefaults< NDIM >::get_bc(), int k=FunctionDefaults< NDIM >::get_k())
	Factory function generating separated kernel for convolution with exp(-mu*r*r) More...
template<std::size_t NDIM>
static SeparatedConvolution< double, NDIM > *	GaussOperatorPtr (World &world, double mu, double lo=0.0, double eps=0.0, const BoundaryConditions< NDIM > &bc=FunctionDefaults< NDIM >::get_bc(), int k=FunctionDefaults< NDIM >::get_k())
	Factory function generating separated kernel for convolution with exp(-mu*r*r) in 3D. More...
template<typename T >
void	gaxpy (const double a, ScalarResult< T > &left, const double b, const T &right, const bool fence=true)
	the result type of a macrotask must implement gaxpy More...
template<typename T , typename Q , typename R , std::size_t NDIM>
void	gaxpy (Q alpha, std::vector< Function< T, NDIM >> &a, Q beta, const std::vector< Function< R, NDIM >> &b, const bool fence)
	Generalized A*X+Y for vectors of functions -— a[i] = alpha*a[i] + beta*b[i]. More...
template<typename L , typename R , std::size_t NDIM>
void	gaxpy (TENSOR_RESULT_TYPE(L, R) alpha, Function< L, NDIM > &left, TENSOR_RESULT_TYPE(L, R) beta, const Function< R, NDIM > &right, bool fence=true)
	adds beta*right only left: alpha*left + beta*right optional fence and no automatic compression More...
template<typename T , typename Q , typename R , std::size_t NDIM>
void	gaxpy (World &world, Q alpha, std::vector< Function< T, NDIM > > &a, Q beta, const std::vector< Function< R, NDIM > > &b, bool fence=true)
	Generalized A*X+Y for vectors of functions -— a[i] = alpha*a[i] + beta*b[i]. More...
template<typename T , typename Q , typename R , std::size_t NDIM>
void	gaxpy (World &world, Q alpha, std::vector< Function< T, NDIM > > &a, Q beta, const std::vector< Function< R, NDIM > > &b, unsigned int blk=1, bool fence=true)
	Generalized A*X+Y for vectors of functions -— a[i] = alpha*a[i] + beta*b[i]. More...
template<typename T , typename Q , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(Q, TENSOR_RESULT_TYPE(T, R)), NDIM > >	gaxpy_oop (Q alpha, const std::vector< Function< T, NDIM > > &a, Q beta, const Function< R, NDIM > &b, bool fence=true)
	out-of-place gaxpy for a vectors and a function: result[i] = alpha * a[i] + beta * b More...
template<typename T , typename Q , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(Q, TENSOR_RESULT_TYPE(T, R)), NDIM > >	gaxpy_oop (Q alpha, const std::vector< Function< T, NDIM > > &a, Q beta, const std::vector< Function< R, NDIM > > &b, bool fence=true)
	out-of-place gaxpy for two vectors: result[i] = alpha * a[i] + beta * b[i] More...
template<typename L , typename R , std::size_t NDIM>
Function< TENSOR_RESULT_TYPE(L, R), NDIM >	gaxpy_oop (TENSOR_RESULT_TYPE(L, R) alpha, const Function< L, NDIM > &left, TENSOR_RESULT_TYPE(L, R) beta, const Function< R, NDIM > &right, bool fence=true)
	Returns new function alpha*left + beta*right optional fence and no automatic compression. More...
template<typename T , std::size_t NDIM>
Function< T, NDIM >	gaxpy_oop_reconstructed (const double alpha, const Function< T, NDIM > &left, const double beta, const Function< T, NDIM > &right, const bool fence=true)
	Returns new function alpha*left + beta*right optional fence, having both addends reconstructed. More...
template void	geev (const Tensor< double > &A, Tensor< double > &V, Tensor< double_complex > &e)
template<typename T >
void	geev (const Tensor< T > &A, Tensor< T > &VR, Tensor< std::complex< T >> &e)
	Real non-symmetric or complex non-Hermitian eigenproblem. More...
template<typename T >
void	geevp (World &world, const Tensor< T > &A, Tensor< T > &VR, Tensor< std::complex< T >> &e)
template void	gelss (const Tensor< double > &a, const Tensor< double > &b, double rcond, Tensor< double > &x, Tensor< Tensor< double >::scalar_type > &s, long &rank, Tensor< Tensor< double >::scalar_type > &sumsq)
template void	gelss (const Tensor< double_complex > &a, const Tensor< double_complex > &b, double rcond, Tensor< double_complex > &x, Tensor< Tensor< double_complex >::scalar_type > &s, long &rank, Tensor< Tensor< double_complex >::scalar_type > &sumsq)
template<typename T >
void	gelss (const Tensor< T > &a, const Tensor< T > &b, double rcond, Tensor< T > &x, Tensor< typename Tensor< T >::scalar_type > &s, long &rank, Tensor< typename Tensor< T >::scalar_type > &sumsq)
	Solve Ax = b for general A using the LAPACK *gelss routines. More...
template<typename R , typename Q >
GenTensor< TENSOR_RESULT_TYPE(R, Q)>	general_transform (const GenTensor< R > &t, const Tensor< Q > c[])
template<typename R , typename Q >
SVDTensor< TENSOR_RESULT_TYPE(R, Q)>	general_transform (const SVDTensor< R > &t, const Tensor< Q > c[])
template<class T , class Q >
Tensor< TENSOR_RESULT_TYPE(T, Q)>	general_transform (const Tensor< T > &t, const Tensor< Q > c[])
	Transform all dimensions of the tensor t by distinct matrices c. More...
template<class T , class Q >
TensorTrain< TENSOR_RESULT_TYPE(T, Q)>	general_transform (const TensorTrain< T > &t, const Tensor< Q > c[])
	Transform all dimensions of the tensor t by distinct matrices c. More...
template void	geqp3 (Tensor< double > &A, Tensor< double > &tau, Tensor< integer > &jpvt)
template void	geqp3 (Tensor< double_complex > &A, Tensor< double_complex > &tau, Tensor< integer > &jpvt)
template<typename T >
void	geqp3 (Tensor< T > &A, Tensor< T > &tau, Tensor< integer > &jpvt)
	Compute the QR factorization. More...
template<typename T >
void	geqp3_result (Tensor< T > &A, Tensor< T > &tau, Tensor< integer > &jpvt, Tensor< T > &work)
template void	gesv (const Tensor< double > &a, const Tensor< double > &b, Tensor< double > &x)
template void	gesv (const Tensor< double_complex > &a, const Tensor< double_complex > &b, Tensor< double_complex > &x)
template<typename T >
void	gesv (const Tensor< T > &a, const Tensor< T > &b, Tensor< T > &x)
	Solve Ax = b for general A using the LAPACK *gesv routines. More...
template<typename T >
void	gesvp (World &world, const Tensor< T > &a, const Tensor< T > &b, Tensor< T > &x)
const AtomicData &	get_atomic_data (unsigned int atomic_number)
double	get_charge_from_file (const std::string filename, unsigned int atype)
template<typename T , std::size_t NDIM>
std::vector< std::shared_ptr< FunctionImpl< T, NDIM > > >	get_impl (const std::vector< Function< T, NDIM >> &v)
template<typename tupleT , std::size_t I>
constexpr std::size_t	get_index_of_first_vector_argument ()
	given a tuple return the index of the first argument that is a vector of Function<T,NDIM> More...
template<typename tupleT , std::size_t I>
constexpr std::size_t	get_index_of_second_vector_argument ()
	given a tuple return the index of the second argument that is a vector of Function<T,NDIM> More...
std::string	get_mra_data_dir ()
const long long *	get_papi_measurement ()
template<typename T , std::size_t NDIM>
double	get_size (const Function< T, NDIM > &f)
template<typename T , std::size_t NDIM>
double	get_size (World &world, const std::vector< Function< T, NDIM > > &v)
template void	ggev (const Tensor< double > &A, Tensor< double > &B, Tensor< double > &V, Tensor< double_complex > &e)
template<typename T >
void	ggev (const Tensor< T > &A, Tensor< T > &B, Tensor< T > &VR, Tensor< std::complex< T >> &e)
	Generalized real-non-symmetric or complex-non-Hermitian eigenproblem. More...
template<typename T >
void	ggevp (World &world, const Tensor< T > &A, Tensor< T > &B, Tensor< T > &VR, Tensor< std::complex< T >> &e)
template<typename T , typename real_type , typename scalar_type >
void	GMRES (const AbstractVectorSpace< T, real_type, scalar_type > &space, const Operator< T > &op, const T &b, T &x, int &maxiters, real_type &resid_thresh, real_type &update_thresh, const bool outp=false)
	A GMRES solver routine for linear systems, . More...
void	gprofexit (int id, int nproc)
	Rename gmon.out for each process by ordering process termination. More...
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	grad (const Function< T, NDIM > &f, bool refine=false, bool fence=true)
	shorthand gradient operator More...
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	grad_ble_one (const Function< T, NDIM > &f, bool refine=false, bool fence=true)
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	grad_ble_two (const Function< T, NDIM > &f, bool refine=false, bool fence=true)
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	grad_bpsline_two (const Function< T, NDIM > &f, bool refine=false, bool fence=true)
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	grad_bspline_one (const Function< T, NDIM > &f, bool refine=false, bool fence=true)
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	grad_bspline_three (const Function< T, NDIM > &f, bool refine=false, bool fence=true)
static std::vector< std::shared_ptr< SeparatedConvolution< double, 3 > > >	GradBSHOperator (World &world, double mu, double lo, double eps, const BoundaryConditions< 3 > &bc=FunctionDefaults< 3 >::get_bc(), int k=FunctionDefaults< 3 >::get_k())
	Factory function generating operator for convolution with grad(bsh) in 3D. More...
static std::vector< std::shared_ptr< SeparatedConvolution< double, 3 > > >	GradCoulombOperator (World &world, double lo, double eps, const BoundaryConditions< 3 > &bc=FunctionDefaults< 3 >::get_bc(), int k=FunctionDefaults< 3 >::get_k())
	Factory function generating operator for convolution with grad(1/r) in 3D. More...
template<typename T , std::size_t NDIM>
std::vector< std::shared_ptr< Derivative< T, NDIM > > >	gradient_operator (World &world, const BoundaryConditions< NDIM > &bc=FunctionDefaults< NDIM >::get_bc(), int k=FunctionDefaults< NDIM >::get_k())
	Convenience function returning vector of derivative operators implementing grad ( ) More...
static std::vector< std::shared_ptr< SeparatedConvolution< double, 3 > > >	GradSlaterOperator (World &world, double gamma, double lo, double eps, const BoundaryConditions< 3 > &bc=FunctionDefaults< 3 >::get_bc(), int k=FunctionDefaults< 3 >::get_k())
	Factory function generating operator for convolution with grad(e^{-\gamma*r}) in 3D. More...
template<typename T , std::size_t KDIM, std::size_t LDIM>
Function< T, KDIM+LDIM >	hartree_product (const Function< T, KDIM > &left2, const Function< T, LDIM > &right2)
	Performs a Hartree product on the two given low-dimensional functions. More...
template<typename T , std::size_t KDIM, std::size_t LDIM, typename opT >
Function< T, KDIM+LDIM >	hartree_product (const Function< T, KDIM > &left2, const Function< T, LDIM > &right2, const opT &op)
	Performs a Hartree product on the two given low-dimensional functions. More...
template<typename T , std::size_t KDIM, std::size_t LDIM>
Function< T, KDIM+LDIM >	hartree_product (const std::vector< Function< T, KDIM >> &left, const std::vector< Function< T, LDIM >> &right)
	Performs a Hartree/outer product on the two given low-dimensional function vectors. More...
template<class T >
void	hash_combine (hashT &seed, const T &v)
	Combine hash values. More...
template<class T >
hashT	hash_range (const T *t, std::size_t n)
	Combine the hash values of a pointer range. More...
template<class T , std::size_t n>
hashT	hash_range (const T(&t)[n])
	Combine the hash values of a C-style array. More...
template<class T >
std::enable_if< std::is_fundamental< T >::value >::type	hash_range (hashT &seed, const T *t, std::size_t n)
	Combine the hash values of a pointer range. More...
template<class T >
std::enable_if<!std::is_fundamental< T >::value >::type	hash_range (hashT &seed, const T *t, std::size_t n)
	Combine the hash values of a pointer range. More...
template<class T , std::size_t n>
void	hash_range (hashT &seed, const T(&t)[n])
	Combine the hash values of a C-style array. More...
template<class It >
void	hash_range (hashT &seed, It first, It last)
template<class It >
hashT	hash_range (It first, It last)
	Combine the hash values of an iterator range. More...
template<typename T , std::size_t N>
madness::hashT	hash_value (const std::array< T, N > &a)
	Hash std::array with madness hash. More...
template<typename T >
hashT	hash_value (const std::basic_string< T > &t)
	Hash a std::basic_string. More...
template<typename T , typename R >
hashT	hash_value (const std::pair< T, R > &t)
	Hash a std::pair. More...
template<typename T >
auto	hash_value (const T &t)
	Hash a class object. More...
template<typename T >
hashT	hash_value (const T *t)
	Hash a pointer address. More...
template<class T >
std::enable_if< std::is_fundamental< T >::value &&((sizeof(T)%sizeof(uint32_t))==0), hashT >::type	hash_value (const T t)
	Hash a single fundamental object. More...
template<class T >
std::enable_if< std::is_fundamental< T >::value &&((sizeof(T)%sizeof(uint32_t)) !=0), hashT >::type	hash_value (const T t)
	Hash a single fundamental object. More...
hashT	hash_value (const uniqueidT &id)
	Hash a uniqueidT. More...
template<>
void	hereig (char jobz, char uplo, integer n, complex_real4 *A, integer lda, real4 *W)
template<>
void	hereig (char jobz, char uplo, integer n, complex_real8 *A, integer lda, real8 *W)
template<>
void	hereig (char jobz, char uplo, integer n, real4 *A, integer lda, real4 *W)
template<>
void	hereig (char jobz, char uplo, integer n, real8 *A, integer lda, real8 *W)
template<typename T >
void	hereig (char jobz, char uplo, integer n, T *A, integer lda, typename detail::real_type< T >::type *W)
	Solve the EVP via LAPACK. More...
template<>
void	hereig_gen (integer itype, char jobz, char uplo, integer n, complex_real4 *A, integer lda, complex_real4 *B, integer ldb, real4 *W)
template<>
void	hereig_gen (integer itype, char jobz, char uplo, integer n, complex_real8 *A, integer lda, complex_real8 *B, integer ldb, real8 *W)
template<>
void	hereig_gen (integer itype, char jobz, char uplo, integer n, real4 *A, integer lda, real4 *B, integer ldb, real4 *W)
template<>
void	hereig_gen (integer itype, char jobz, char uplo, integer n, real8 *A, integer lda, real8 *B, integer ldb, real8 *W)
template<typename T >
void	hereig_gen (integer itype, char jobz, char uplo, integer n, T *A, integer lda, T *B, integer ldb, typename detail::real_type< T >::type *W)
	Solve the Generalized EVP via LAPACK. More...
template<std::size_t NDIM>
Function< double, NDIM >	imag (const Function< double_complex, NDIM > &z, bool fence=true)
	Returns a new function that is the imaginary part of the input. More...
template<typename Q , int NDIM>
Function< typename TensorTypeData< Q >::scalar_type, NDIM >	imag (const Function< Q, NDIM > &func)
template<typename T , std::size_t NDIM>
std::vector< Function< typename Tensor< T >::scalar_type, NDIM > >	imag (const std::vector< Function< T, NDIM > > &v, bool fence=true)
	return the imaginary parts of the vector's function (if complex) More...
template<class T >
Tensor< typename Tensor< T >::scalar_type >	imag (const Tensor< T > &t)
	Return a new tensor holding the imaginary part of each element of t (complex types only) More...
double	imag (double x)
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	impl2function (const std::vector< std::shared_ptr< FunctionImpl< T, NDIM >>> vimpl)
void	init_tensor_lapack ()
	World/MRA initialization calls this before going multithreaded due to static data in dlamch. More...
World &	initialize (int &argc, char **&argv, bool quiet)
World &	initialize (int &argc, char **&argv, const MPI_Comm &comm, int nthread, bool quiet)
World &	initialize (int &argc, char **&argv, const SafeMPI::Intracomm &comm, bool quiet)
World &	initialize (int &argc, char **&argv, const SafeMPI::Intracomm &comm, int nthread, bool quiet)
World &	initialize (int &argc, char **&argv, int nthread, bool quiet)
void	initialize_legendre_stuff ()
	Call this single threaded to initialize static data (used read only by multiple threads) More...
void	initialize_papi ()
bool	initialized ()
	Check if the MADNESS runtime has been initialized (and not subsequently finalized). More...
template<typename T , std::size_t NDIM>
Function< T, CCPairFunction< T, NDIM >::LDIM >	inner (const CCPairFunction< T, NDIM > &c, const Function< T, CCPairFunction< T, NDIM >::LDIM > &f, const std::array< int, CCPairFunction< T, NDIM >::LDIM > &v1, const std::array< int, CCPairFunction< T, NDIM >::LDIM > &v2)
template<typename T , std::size_t NDIM>
Function< T, CCPairFunction< T, NDIM >::LDIM >	inner (const CCPairFunction< T, NDIM > &c, const Function< T, CCPairFunction< T, NDIM >::LDIM > &f, const std::tuple< int, int, int > v1, const std::tuple< int, int, int > v2)
template<typename T , std::size_t NDIM>
CCPairFunction< T, NDIM >	inner (const CCPairFunction< T, NDIM > &c1, const CCPairFunction< T, NDIM > &c2, const std::array< int, CCPairFunction< T, NDIM >::LDIM > &v1, const std::array< int, CCPairFunction< T, NDIM >::LDIM > &v2)
template<typename T , std::size_t NDIM>
CCPairFunction< T, NDIM >	inner (const CCPairFunction< T, NDIM > &c1, const CCPairFunction< T, NDIM > &c2, const std::tuple< int, int, int > v1, const std::tuple< int, int, int > v2)
template<typename T , std::size_t LDIM, typename R , std::size_t KDIM>
Function< TENSOR_RESULT_TYPE(T, R), KDIM+LDIM-2 >	inner (const Function< T, LDIM > &f, const Function< R, KDIM > &g, const std::tuple< int > v1, const std::tuple< int > v2)
	Computes the partial scalar/inner product between two functions, returns a low-dim function. More...
template<typename T , std::size_t LDIM, typename R , std::size_t KDIM>
Function< TENSOR_RESULT_TYPE(T, R), KDIM+LDIM-4 >	inner (const Function< T, LDIM > &f, const Function< R, KDIM > &g, const std::tuple< int, int > v1, const std::tuple< int, int > v2)
	Computes the partial scalar/inner product between two functions, returns a low-dim function. More...
template<typename T , std::size_t LDIM, typename R , std::size_t KDIM>
Function< TENSOR_RESULT_TYPE(T, R), KDIM+LDIM-6 >	inner (const Function< T, LDIM > &f, const Function< R, KDIM > &g, const std::tuple< int, int, int > v1, const std::tuple< int, int, int > v2)
	Computes the partial scalar/inner product between two functions, returns a low-dim function. More...
template<typename T , std::size_t NDIM, std::size_t PDIM>
LowRankFunction< T, NDIM >	inner (const Function< T, NDIM > &f1, const LowRankFunction< T, NDIM > &f2, const particle< PDIM > p1, const particle< PDIM > p2)
	lrf(1,3) = inner(full(1,2), lrf(2,3)) More...
template<typename T , std::size_t NDIM>
double	inner (const LowRankFunction< T, NDIM > &a, const LowRankFunction< T, NDIM > &b)
template<typename T , std::size_t NDIM, std::size_t PDIM>
LowRankFunction< T, NDIM >	inner (const LowRankFunction< T, NDIM > &f1, const Function< T, NDIM > &f2, const particle< PDIM > p1, const particle< PDIM > p2)
	lrf(1,3) = inner(lrf(1,2), full(2,3)) More...
template<typename T , std::size_t NDIM, std::size_t PDIM>
Function< T, NDIM >	inner (const LowRankFunction< T, NDIM > &f1, const Function< T, PDIM > &f2, const particle< PDIM > p1, const particle< PDIM > p2=particle< PDIM >::particle1())
	f(1) = inner(lrf(1,2), f(2)) More...
template<typename T , std::size_t NDIM, std::size_t PDIM>
LowRankFunction< T, NDIM >	inner (const LowRankFunction< T, NDIM > &f1, const LowRankFunction< T, NDIM > &f2, const particle< PDIM > p1, const particle< PDIM > p2)
	lrf(1,3) = inner(lrf(1,2), lrf(2,3)) More...
template<typename T , std::size_t NDIM, std::size_t PDIM>
std::vector< Function< T, NDIM-PDIM > >	inner (const LowRankFunction< T, NDIM > &f1, const std::vector< Function< T, PDIM >> &vf, const particle< PDIM > p1, const particle< PDIM > p2=particle< PDIM >::particle1())
	f(1) = inner(lrf(1,2), f(2)) More...
double	inner (const std::valarray< double > &bra, const std::valarray< double > &ket)
	inner product for std::valarray More...
template<typename T , std::size_t NDIM>
std::vector< CCPairFunction< T, NDIM > >	inner (const std::vector< CCPairFunction< T, NDIM >> &c1, const std::vector< CCPairFunction< T, NDIM >> &c2, const std::array< int, CCPairFunction< T, NDIM >::LDIM > &v1, const std::array< int, CCPairFunction< T, NDIM >::LDIM > &v2)
template<typename T , std::size_t NDIM>
std::vector< CCPairFunction< T, NDIM > >	inner (const std::vector< CCPairFunction< T, NDIM >> &c1, const std::vector< CCPairFunction< T, NDIM >> &c2, const std::tuple< int, int, int > v1, const std::tuple< int, int, int > v2)
template<class T , class Q >
Tensor< TENSOR_RESULT_TYPE(T, Q)>	inner (const Tensor< T > &left, const Tensor< Q > &right, long k0=-1, long k1=0)
	Inner product ... result(i,j,...,p,q,...) = sum(z) left(i,j,...,z)*right(z,p,q,...) More...
template<typename T , std::size_t N>
T	inner (const Vector< T, N > &l, const Vector< T, N > &r)
	compute the inner product two Vectors. More...
auto	inner (const X_space &A, const X_space &B) -> Tensor< double >
	Computes the matrix elements between two response spaces. More...
return f	inner (g)
double	inner (response_space &a, response_space &b)
template<typename T , typename R , std::size_t NDIM>
Tensor< TENSOR_RESULT_TYPE(T, R) >	inner (World &world, const Function< T, NDIM > &f, const std::vector< Function< R, NDIM > > &g)
	Computes the inner product of a function with a function vector - q(i) = inner(f,g[i]) More...
template<typename T , typename R , std::size_t NDIM>
Tensor< TENSOR_RESULT_TYPE(T, R) >	inner (World &world, const std::vector< Function< T, NDIM > > &f, const std::vector< Function< R, NDIM > > &g)
	Computes the element-wise inner product of two function vectors - q(i) = inner(f[i],g[i]) More...
return f	inner_adaptive (func)
template<class T , class Q >
void	inner_result (const Tensor< T > &left, const Tensor< Q > &right, long k0, long k1, Tensor< TENSOR_RESULT_TYPE(T, Q) > &result)
	Accumulate inner product into user provided, contiguous, correctly sized result tensor. More...
template<std::size_t NDIM, typename T , std::size_t LDIM, typename R , std::size_t KDIM, std::size_t CDIM = (KDIM + LDIM - NDIM) / 2>
Function< TENSOR_RESULT_TYPE(T, R), NDIM >	innerXX (const Function< T, LDIM > &f, const Function< R, KDIM > &g, const std::array< int, CDIM > v1, const std::array< int, CDIM > v2, int task=0)
	Computes the partial scalar/inner product between two functions, returns a low-dim function. More...
template<std::size_t NDIM, typename T , std::size_t LDIM, typename R , std::size_t KDIM, std::size_t CDIM = (KDIM + LDIM - NDIM) / 2>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	innerXX (const Function< T, LDIM > &f, const std::vector< Function< R, KDIM >> &vg, const std::array< int, CDIM > v1, const std::array< int, CDIM > v2, int task=0)
	Computes the partial scalar/inner product between two functions, returns a low-dim function. More...
template<typename T >
DistributedMatrix< T >	interleave_rows (const DistributedMatrix< T > &a, const DistributedMatrix< T > &b)
	Generates a distributed matrix with rows of a and b interleaved. More...
template Tensor< double >	inverse (const Tensor< double > &A)
template Tensor< double_complex >	inverse (const Tensor< double_complex > &A)
template<typename T >
Tensor< T >	inverse (const Tensor< T > &a_in)
	invert general square matrix A More...
template<typename T , std::size_t NDIM>
bool	is_collected (const std::vector< CCPairFunction< T, NDIM >> &other)
bool	is_madness_thread ()
template<typename Q , typename R >
bool	is_same_tensor_type (const GenTensor< R > &rhs, const GenTensor< Q > &lhs)
void	jacobi (Tensor< double > &A, Tensor< double > &V, const std::vector< int > &set)
Exchange< double, 3 >::ExchangeImpl	junkjunkjunk (World &world, const SCF *calc, const int ispin)
template<typename T >
Tensor< T >	KAIN (const Tensor< T > &Q, double rcond=1e-12)
	Solves non-linear equation using KAIN (returns coefficients to compute next vector) More...
void	legendre_polynomials (double x, long order, double *p)
	Evaluate the Legendre polynomials up to the given order at x in [-1,1]. More...
void	legendre_scaling_functions (double x, long k, double *p)
	Evaluate the first k Legendre scaling functions. More...
template<class T , std::size_t NDIM>
void	load (Function< T, NDIM > &f, const std::string name)
void	load_balance (const real_function_6d &f, const bool leaf)
	do some load-balancing More...
void	load_coeffs (World &world, const char *dir)
	Collective routine to load and cache twoscale & autorrelation coefficients. More...
template<typename T , size_t NDIM>
void	load_function (World &world, std::vector< Function< T, NDIM > > &f, const std::string name)
	load a vector of functions More...
void	load_quadrature (World &world, const char *dir)
	Collective routine to pre-load and cache the quadrature points and weights. More...
static xc_func_type *	lookup_func (const std::string &name, bool polarized)
static std::string	lookup_id (const int id)
static int	lookup_name (const std::string &name)
std::string	lowercase (const std::string &s)
template void	lq (Tensor< double > &A, Tensor< double > &L)
template void	lq (Tensor< double_complex > &A, Tensor< double_complex > &L)
template<typename T >
void	lq (Tensor< T > &A, Tensor< T > &R)
	compute the LQ decomposition of the matrix A = L Q More...
template void	lq_result (Tensor< double > &A, Tensor< double > &R, Tensor< double > &tau, Tensor< double > &work, bool do_qr)
template void	lq_result (Tensor< double_complex > &A, Tensor< double_complex > &R, Tensor< double_complex > &tau, Tensor< double_complex > &work, bool do_qr)
template<typename T >
void	lq_result (Tensor< T > &A, Tensor< T > &R, Tensor< T > &tau, Tensor< T > &work, bool do_qr)
	compute the LQ decomposition of the matrix A = L Q More...
int	main (int argc, char **argv)
std::vector< atom_information< 3 > >	make_atom_vec (const Molecule &molecule, double R1_, double R2_)
double	make_exp (double x)
static xc_func_type *	make_func (int id, bool polarized)
double	make_log (double x)
template<typename T , std::size_t NDIM>
void	make_nonstandard (World &world, std::vector< Function< T, NDIM > > &v, bool fence=true)
	Generates non-standard form of a vector of functions. More...
template<std::size_t NDIM>
static double	make_radius (const Vector< double, NDIM > &x)
template<typename T , std::size_t NDIM>
void	make_redundant (World &world, const std::vector< Function< T, NDIM > > &v, bool fence=true)
	change tree_state of a vector of functions to redundant More...
template<typename T , std::size_t NDIM>
Function< T, NDIM >	map_and_mirror (const Function< T, NDIM > &f, const std::vector< long > &map, const std::vector< long > &mirror, bool fence=true)
	This is replaced with mirror(map(f)), optional fence. More...
template<typename T , std::size_t NDIM>
Function< T, NDIM >	mapdim (const Function< T, NDIM > &f, const std::vector< long > &map, bool fence=true)
	Generate a new function by reordering dimensions ... optional fence. More...
double	mask1 (double x)
static double	mask3 (const coordT &ruser)
static double	mask_functor_box (const coord_3d &x)
static void	mask_info (integer &info)
template<std::size_t NDIM>
static double	mask_munging (const double x)
template<typename T , std::size_t NDIM>
DistributedMatrix< T >	matrix_inner (const DistributedMatrixDistribution &d, const std::vector< Function< T, NDIM > > &f, const std::vector< Function< T, NDIM > > &g, bool sym=false)
template<typename T , std::size_t NDIM>
void	matrix_inner (DistributedMatrix< T > &A, const std::vector< Function< T, NDIM > > &f, const std::vector< Function< T, NDIM > > &g, bool sym=false)
template<typename T , typename R , std::size_t NDIM>
Tensor< TENSOR_RESULT_TYPE(T, R) >	matrix_inner (World &world, const std::vector< Function< T, NDIM > > &f, const std::vector< Function< R, NDIM > > &g, bool sym=false)
	Computes the matrix inner product of two function vectors - q(i,j) = inner(f[i],g[j]) More...
template<typename T , typename R , std::size_t NDIM>
Tensor< TENSOR_RESULT_TYPE(T, R) >	matrix_inner_old (World &world, const std::vector< Function< T, NDIM > > &f, const std::vector< Function< R, NDIM > > &g, bool sym=false)
	Computes the matrix inner product of two function vectors - q(i,j) = inner(f[i],g[j]) More...
template<typename T , typename R , std::size_t NDIM>
std::vector< std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > > >	matrix_mul_sparse (World &world, const std::vector< Function< R, NDIM > > &f, const std::vector< Function< R, NDIM > > &g, double tol, bool fence=true, bool symm=false)
	Outer product of a vector of functions with a vector of functions using sparsity. More...
template<typename T , std::size_t NDIM>
Function< T, NDIM >	mirror (const Function< T, NDIM > &f, const std::vector< long > &mirrormap, bool fence=true)
	Generate a new function by mirroring within the dimensions .. optional fence. More...
template<>
void	mTxm (long dimi, long dimj, long dimk, double *MADNESS_RESTRICT c, const double *MADNESS_RESTRICT a, const double *MADNESS_RESTRICT b)
	Matrix transpose * matrix (hand unrolled version) More...
template<typename T , typename Q , typename S >
static void	mTxm (long dimi, long dimj, long dimk, T *MADNESS_RESTRICT c, const Q *MADNESS_RESTRICT a, const S *MADNESS_RESTRICT b)
template<typename T >
void	mTxm (long dimi, long dimj, long dimk, T *MADNESS_RESTRICT c, const T *a, const T *b)
	Matrix += Matrix transpose * matrix ... MKL interface version. More...
template<typename T , typename Q , typename S >
static void	mTxm_reference (long dimi, long dimj, long dimk, T *MADNESS_RESTRICT c, const Q *MADNESS_RESTRICT a, const S *MADNESS_RESTRICT b)
	Matrix += Matrix transpose * matrix ... reference implementation (slow but correct) More...
template<typename aT , typename bT , typename cT >
void	mTxmq (long dimi, long dimj, long dimk, cT *MADNESS_RESTRICT c, const aT *a, const bT *b, long ldb=-1)
template<typename T >
void	mTxmq (long dimi, long dimj, long dimk, T *MADNESS_RESTRICT c, const T *a, const T *b, long ldb=-1)
	Matrix = Matrix transpose * matrix ... MKL interface version. More...
template<typename aT , typename bT , typename cT >
void	mTxmq_padding (long dimi, long dimj, long dimk, long ext_b, cT *c, const aT *a, const bT *b)
template<typename aT , typename bT , typename cT >
void	mTxmq_reference (long dimi, long dimj, long dimk, cT *MADNESS_RESTRICT c, const aT *a, const bT *b, long ldb=-1)
	Matrix = Matrix transpose * matrix ... slow reference implementation. More...
template<>
void	mTxmT (long dimi, long dimj, long dimk, double *MADNESS_RESTRICT csave, const double *MADNESS_RESTRICT asave, const double *MADNESS_RESTRICT b)
	Matrix transpose * matrix transpose (hand tiled and unrolled) More...
template<typename T , typename Q , typename S >
static void	mTxmT (long dimi, long dimj, long dimk, T *MADNESS_RESTRICT c, const Q *MADNESS_RESTRICT a, const S *MADNESS_RESTRICT b)
template<typename T >
void	mTxmT (long dimi, long dimj, long dimk, T *MADNESS_RESTRICT c, const T *a, const T *b)
	Matrix += Matrix transpose * matrix transpose ... MKL interface version. More...
template<typename T , typename Q , typename S >
static void	mTxmT_reference (long dimi, long dimj, long dimk, T *MADNESS_RESTRICT c, const Q *MADNESS_RESTRICT a, const S *MADNESS_RESTRICT b)
	Matrix += Matrix transpose * matrix transpose reference implementation (slow but correct) More...
template<typename L , typename R , std::size_t NDIM>
Function< TENSOR_RESULT_TYPE(L, R), NDIM >	mul (const Function< L, NDIM > &left, const Function< R, NDIM > &right, bool fence=true)
	Same as operator* but with optional fence and no automatic reconstruction. More...
template<typename Q , typename T , std::size_t NDIM>
Function< TENSOR_RESULT_TYPE(Q, T), NDIM >	mul (const Function< T, NDIM > &f, const Q alpha, bool fence=true)
	Returns new function equal to f(x)*alpha with optional fence. More...
template<typename Q , typename T , std::size_t NDIM>
Function< TENSOR_RESULT_TYPE(Q, T), NDIM >	mul (const Q alpha, const Function< T, NDIM > &f, bool fence=true)
	Returns new function equal to alpha*f(x) with optional fence. More...
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	mul (World &world, const Function< T, NDIM > &a, const std::vector< Function< R, NDIM > > &v, bool fence=true)
	Multiplies a function against a vector of functions — q[i] = a * v[i]. More...
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	mul (World &world, const Function< T, NDIM > &a, const std::vector< Function< R, NDIM > > &v, const unsigned int blk=1, const bool fence=true)
	Multiplies a function against a vector of functions — q[i] = a * v[i]. More...
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	mul (World &world, const std::vector< Function< T, NDIM > > &a, const std::vector< Function< R, NDIM > > &b, bool fence=true)
	Multiplies two vectors of functions q[i] = a[i] * b[i]. More...
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	mul (World &world, const std::vector< Function< T, NDIM > > &a, const std::vector< Function< R, NDIM > > &b, bool fence=true, unsigned int blk=1)
	Multiplies two vectors of functions q[i] = a[i] * b[i]. More...
template<typename L , typename R , std::size_t NDIM>
Function< TENSOR_RESULT_TYPE(L, R), NDIM >	mul_sparse (const Function< L, NDIM > &left, const Function< R, NDIM > &right, double tol, bool fence=true)
	Sparse multiplication — left and right must be reconstructed and if tol!=0 have tree of norms already created. More...
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	mul_sparse (World &world, const Function< T, NDIM > &a, const std::vector< Function< R, NDIM > > &v, const double tol, const bool fence=true, const unsigned int blk=1)
	Multiplies a function against a vector of functions using sparsity of a and v[i] — q[i] = a * v[i]. More...
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	mul_sparse (World &world, const Function< T, NDIM > &a, const std::vector< Function< R, NDIM > > &v, double tol, bool fence=true)
	Multiplies a function against a vector of functions using sparsity of a and v[i] — q[i] = a * v[i]. More...
template<typename T , typename opT , std::size_t NDIM>
std::vector< Function< T, NDIM > >	multi_to_multi_op_values (const opT &op, const std::vector< Function< T, NDIM > > &vin, const bool fence=true)
	apply op on the input vector yielding an output vector of functions More...
template<typename T , typename opT , std::size_t NDIM>
Function< T, NDIM >	multiop_values (const opT &op, const std::vector< Function< T, NDIM > > &vf)
template<typename T , std::size_t NDIM, std::size_t LDIM>
Function< T, NDIM >	multiply (const Function< T, NDIM > f, const Function< T, LDIM > g, const int particle, const bool fence=true)
	multiply a high-dimensional function with a low-dimensional function More...
template<typename T , std::size_t NDIM, std::size_t LDIM>
std::vector< Function< T, NDIM > >	multiply (const Function< T, NDIM > f, const std::vector< Function< T, LDIM > > g, const std::tuple< int, int, int > v)
template<std::size_t NDIM>
static double	munge (const double x)
template<>
void	mxm (long dimi, long dimj, long dimk, double *MADNESS_RESTRICT c, const double *MADNESS_RESTRICT a, const double *MADNESS_RESTRICT b)
	Matrix * matrix (hand unrolled version) More...
template<typename T , typename Q , typename S >
static void	mxm (long dimi, long dimj, long dimk, T *MADNESS_RESTRICT c, const Q *MADNESS_RESTRICT a, const S *MADNESS_RESTRICT b)
template<typename T >
void	mxm (long dimi, long dimj, long dimk, T *MADNESS_RESTRICT c, const T *a, const T *b)
	Matrix += Matrix * matrix ... BLAS/MKL interface version. More...
template<typename T , typename Q , typename S >
static void	mxm_reference (long dimi, long dimj, long dimk, T *MADNESS_RESTRICT c, const Q *MADNESS_RESTRICT a, const S *MADNESS_RESTRICT b)
	Matrix += Matrix * matrix reference implementation (slow but correct) More...
template<>
void	mxmT (long dimi, long dimj, long dimk, double *MADNESS_RESTRICT c, const double *MADNESS_RESTRICT a, const double *MADNESS_RESTRICT b)
	Matrix * matrix transpose (hand unrolled version) More...
template<typename T , typename Q , typename S >
static void	mxmT (long dimi, long dimj, long dimk, T *MADNESS_RESTRICT c, const Q *MADNESS_RESTRICT a, const S *MADNESS_RESTRICT b)
template<typename T >
void	mxmT (long dimi, long dimj, long dimk, T *MADNESS_RESTRICT c, const T *a, const T *b)
	Matrix += Matrix * matrix transpose ... MKL interface version. More...
template<typename T , typename Q , typename S >
static void	mxmT_reference (long dimi, long dimj, long dimk, T *MADNESS_RESTRICT c, const Q *MADNESS_RESTRICT a, const S *MADNESS_RESTRICT b)
	Matrix += Matrix * matrix transpose ... reference implementation (slow but correct) More...
STATIC Tensor< double >	my_conj_transpose (Tensor< double > a)
STATIC Tensor< double_complex >	my_conj_transpose (Tensor< double_complex > a)
STATIC Tensor< float >	my_conj_transpose (Tensor< float > a)
STATIC Tensor< float_complex >	my_conj_transpose (Tensor< float_complex > a)
static void	myusleep (unsigned int us)
	Sleep or spin for specified number of microseconds. More...
std::string	name (const FuncType &type, const int ex=-1)
template<typename... argT>
AmArg *	new_am_arg (const argT &... args)
	Convenience template for serializing arguments into a new AmArg. More...
template<typename T , std::size_t NDIM>
static XNonlinearSolver< std::vector< Function< T, NDIM > >, T, vector_function_allocator< T, NDIM > >	nonlinear_vector_solver (World &world, const long nvec)
template<typename T , std::size_t NDIM>
void	nonstandard (World &world, std::vector< Function< T, NDIM > > &v, unsigned int blk=1, bool fence=true)
	Generates non-standard form of a vector of functions. More...
template<typename T , std::size_t NDIM>
double	norm2 (World &world, const std::vector< Function< T, NDIM > > &v)
	Computes the 2-norm of a vector of functions. More...
template<typename T , std::size_t NDIM>
std::vector< double >	norm2s (World &world, const std::vector< Function< T, NDIM > > &v)
	Computes the 2-norms of a vector of functions. More...
template<typename T , std::size_t NDIM>
std::vector< double >	norm2s (World &world, const std::vector< Function< T, NDIM > > &v, const unsigned int blk=1, const bool fence=true)
	Computes the 2-norms of a vector of functions. More...
template<typename T , std::size_t NDIM>
Tensor< double >	norm2s_T (World &world, const std::vector< Function< T, NDIM >> &v)
	Computes the 2-norms of a vector of functions. More...
template<typename T , std::size_t NDIM>
void	norm_tree (World &world, const std::vector< Function< T, NDIM > > &v, bool fence=true)
	Makes the norm tree for all functions in a vector. More...
template<typename T , std::size_t NDIM>
void	norm_tree (World &world, const std::vector< Function< T, NDIM > > &v, bool fence=true, unsigned int blk=1)
	Makes the norm tree for all functions in a vector. More...
template<typename T , std::size_t NDIM>
void	normalize (World &world, std::vector< Function< T, NDIM > > &v, bool fence=true)
	Normalizes a vector of functions — v[i] = v[i].scale(1.0/v[i].norm2()) More...
bool	operator!= (const DistributedID &left, const DistributedID &right)
	Distributed ID inequality comparison operator. More...
bool	operator!= (const QCCalculationParametersBase &p1, const QCCalculationParametersBase &p2)
bool	operator!= (const ResponseParameters &p1, const ResponseParameters &p2)
bool	operator!= (const uniqueidT &a, const uniqueidT &b)
	Inequality comparison operator. More...
template<typename T , std::size_t NDIM>
std::vector< CCPairFunction< T, NDIM > >	operator* (const double fac, const std::vector< CCPairFunction< T, NDIM > > &arg)
template<typename L , typename R , std::size_t NDIM>
Function< TENSOR_RESULT_TYPE(L, R), NDIM >	operator* (const Function< L, NDIM > &left, const Function< R, NDIM > &right)
	Multiplies two functions with the new result being of type TensorResultType<L,R> More...
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	operator* (const Function< T, NDIM > &a, const std::vector< Function< R, NDIM > > &v)
	multiply a vector of functions with a function: r[i] = v[i] * a More...
template<typename Q , typename T , std::size_t NDIM>
Function< TENSOR_RESULT_TYPE(Q, T), NDIM >	operator* (const Function< T, NDIM > &f, const Q alpha)
	Returns new function equal to f(x)*alpha. More...
template<typename T , typename Q >
IsSupported< TensorTypeData< Q >, GenTensor< T > >::type	operator* (const Q &x, const GenTensor< T > &t)
	The class defines tensor op scalar ... here define scalar op tensor. More...
template<typename T , typename Q >
IsSupported< TensorTypeData< Q >, Tensor< T > >::type	operator* (const Q &x, const Tensor< T > &t)
	The class defines tensor op scalar ... here define scalar op tensor. More...
template<typename Q , typename T , std::size_t NDIM>
Function< TENSOR_RESULT_TYPE(Q, T), NDIM >	operator* (const Q alpha, const Function< T, NDIM > &f)
	Returns new function equal to alpha*f(x) More...
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	operator* (const R fac, const std::vector< Function< T, NDIM > > &rhs)
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< T, NDIM > >	operator* (const std::vector< Function< T, NDIM > > &rhs, const R fac)
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	operator* (const std::vector< Function< T, NDIM > > &v, const Function< R, NDIM > &a)
	multiply a vector of functions with a function: r[i] = a * v[i] More...
template<typename T , typename U , std::size_t N>
Vector< T, N >	operator* (T l, Vector< U, N > r)
	Scale a Vector. More...
template<typename T , std::size_t N, typename U >
Vector< T, N >	operator* (Vector< T, N > l, const Vector< U, N > &r)
	Multiply (element-wise) two Vectors. More...
template<typename T , std::size_t N, typename U >
Vector< T, N >	operator* (Vector< T, N > l, U r)
	Scale a Vector. More...
template<typename L , typename R , std::size_t NDIM>
Function< TENSOR_RESULT_TYPE(L, R), NDIM >	operator+ (const Function< L, NDIM > &left, const Function< R, NDIM > &right)
	Adds two functions with the new result being of type TensorResultType<L,R> More...
template<typename T , typename R , std::size_t NDIM>
IsSupported< TensorTypeData< R >, Function< TENSOR_RESULT_TYPE(T, R), NDIM > >::type	operator+ (const Function< T, NDIM > &f, R r)
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	operator+ (const Function< T, NDIM > &lhs, const std::vector< Function< T, NDIM > > &rhs)
	result[i] = a + b[i] More...
template<typename T , std::size_t NDIM>
std::vector< CCPairFunction< T, NDIM > >	operator+ (const std::vector< CCPairFunction< T, NDIM >> c1, const std::vector< CCPairFunction< T, NDIM > > &c2)
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	operator+ (const std::vector< Function< T, NDIM > > &lhs, const Function< T, NDIM > &rhs)
	result[i] = a[i] + b More...
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	operator+ (const std::vector< Function< T, NDIM > > &lhs, const std::vector< Function< T, NDIM >> &rhs)
	result[i] = a[i] + b[i] More...
template<typename T , typename Q >
IsSupported< TensorTypeData< Q >, Tensor< T > >::type	operator+ (Q x, const Tensor< T > &t)
	The class defines tensor op scalar ... here define scalar op tensor. More...
template<typename T , typename R , std::size_t NDIM>
IsSupported< TensorTypeData< R >, Function< TENSOR_RESULT_TYPE(T, R), NDIM > >::type	operator+ (R r, const Function< T, NDIM > &f)
template<typename T , std::size_t N, typename U >
Vector< T, N >	operator+ (Vector< T, N > l, const Vector< U, N > &r)
	Add (element-wise) two Vectors. More...
template<typename T , std::size_t N, typename U >
Vector< T, N >	operator+ (Vector< T, N > l, U r)
	Add a scalar to a Vector. More...
template<typename T , std::size_t NDIM>
std::vector< CCPairFunction< T, NDIM > > &	operator+= (std::vector< CCPairFunction< T, NDIM > > &lhs, const CCPairFunction< T, NDIM > &rhs)
template<typename T , std::size_t NDIM>
std::vector< CCPairFunction< T, NDIM > > &	operator+= (std::vector< CCPairFunction< T, NDIM > > &rhs, const std::vector< CCPairFunction< T, NDIM > > &lhs)
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	operator+= (std::vector< Function< T, NDIM > > &lhs, const std::vector< Function< T, NDIM > > &rhs)
template<typename L , typename R , std::size_t NDIM>
Function< TENSOR_RESULT_TYPE(L, R), NDIM >	operator- (const Function< L, NDIM > &left, const Function< R, NDIM > &right)
	Subtracts two functions with the new result being of type TensorResultType<L,R> More...
template<typename T , typename R , std::size_t NDIM>
IsSupported< TensorTypeData< R >, Function< TENSOR_RESULT_TYPE(T, R), NDIM > >::type	operator- (const Function< T, NDIM > &f, R r)
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	operator- (const Function< T, NDIM > &lhs, const std::vector< Function< T, NDIM > > &rhs)
	result[i] = a - b[i] More...
template<typename T , std::size_t NDIM>
std::vector< CCPairFunction< T, NDIM > >	operator- (const std::vector< CCPairFunction< T, NDIM >> c1, const std::vector< CCPairFunction< T, NDIM > > &c2)
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	operator- (const std::vector< Function< T, NDIM > > &lhs, const Function< T, NDIM > &rhs)
	result[i] = a[i] - b More...
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	operator- (const std::vector< Function< T, NDIM > > &lhs, const std::vector< Function< T, NDIM > > &rhs)
	result[i] = a[i] - b[i] More...
template<typename T , typename Q >
IsSupported< TensorTypeData< Q >, Tensor< T > >::type	operator- (Q x, const Tensor< T > &t)
	The class defines tensor op scalar ... here define scalar op tensor. More...
template<typename T , typename R , std::size_t NDIM>
IsSupported< TensorTypeData< R >, Function< TENSOR_RESULT_TYPE(T, R), NDIM > >::type	operator- (R r, const Function< T, NDIM > &f)
template<typename T , std::size_t N, typename U >
Vector< T, N >	operator- (Vector< T, N > l, const Vector< U, N > &r)
	Subtract (element-wise) two Vectors. More...
template<typename T , std::size_t N, typename U >
Vector< T, N >	operator- (Vector< T, N > l, U r)
	Subtract a scalar from a Vector. More...
template<typename T , std::size_t NDIM>
std::vector< CCPairFunction< T, NDIM > > &	operator-= (std::vector< CCPairFunction< T, NDIM > > &rhs, const std::vector< CCPairFunction< T, NDIM > > &lhs)
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	operator-= (std::vector< Function< T, NDIM > > &lhs, const std::vector< Function< T, NDIM > > &rhs)
bool	operator< (const uniqueidT &a, const uniqueidT &b)
	Ordering operator. More...
std::ostream &	operator<< (std::ostream &os, const DistributedID &did)
	Overload redirect to std::ostream to be discoverable via ADL. More...
std::ostream &	operator<< (std::ostream &os, const EnergyType &en)
std::ostream &	operator<< (std::ostream &os, const GuessType &en)
template<std::size_t N = 1>
std::ostream &	operator<< (std::ostream &os, const OpType type)
	operator type to string More...
std::ostream &	operator<< (std::ostream &os, const PairType &en)
template<std::size_t PDIM>
std::ostream &	operator<< (std::ostream &os, const particle< PDIM > &p)
std::ostream &	operator<< (std::ostream &os, const permutation &p)
template<typename Key , typename Tag >
std::ostream &	operator<< (std::ostream &os, const ProcessKey< Key, Tag > &key)
	Overload redirect to std::ostream to be discoverable via ADL. More...
template<typename Key , typename Tag >
std::ostream &	operator<< (std::ostream &os, const TaggedKey< Key, Tag > &key)
	Overload redirect to std::ostream to be discoverable via ADL. More...
template<std::size_t NDIM = 1>
std::ostream &	operator<< (std::ostream &os, const TreeState treestate)
template<typename T >
std::ostream &	operator<< (std::ostream &out, const Future< T > &f)
	Human readable printing of a Future to a stream. More...
template<>
std::ostream &	operator<< (std::ostream &out, const Future< void > &f)
	Stream output operator for a void future. More...
std::ostream &	operator<< (std::ostream &out, const MadnessException &e)
	Enables easy printing of a MadnessException. More...
std::ostream &	operator<< (std::ostream &s, const Atom &atom)
std::ostream &	operator<< (std::ostream &s, const AtomicBasis &c)
std::ostream &	operator<< (std::ostream &s, const AtomicBasisFunction &a)
template<std::size_t NDIM>
static std::ostream &	operator<< (std::ostream &s, const BoundaryConditions< NDIM > &bc)
template<typename T , std::size_t NDIM>
std::ostream &	operator<< (std::ostream &s, const CoeffTracker< T, NDIM > &ct)
std::ostream &	operator<< (std::ostream &s, const ContractedGaussianShell &c)
template<typename T , std::size_t NDIM>
std::ostream &	operator<< (std::ostream &s, const FunctionNode< T, NDIM > &node)
template<std::size_t NDIM>
std::ostream &	operator<< (std::ostream &s, const Key< NDIM > &key)
template<typename T >
static std::ostream &	operator<< (std::ostream &s, const SRConf< T > &sr)
template<class T >
std::ostream &	operator<< (std::ostream &s, const Tensor< T > &t)
	Print (for human consumption) a tensor to the stream. More...
static std::ostream &	operator<< (std::ostream &s, const TensorType &tt)
std::ostream &	operator<< (std::ostream &stream, const Slice &s)
bool	operator== (const DistributedID &left, const DistributedID &right)
	Distributed ID equality comparison operator. More...
bool	operator== (const ResponseParameters &p1, const ResponseParameters &p2)
bool	operator== (const uniqueidT &a, const uniqueidT &b)
	Equality comparison operator. More...
std::istream &	operator>> (std::istream &is, EnergyType &en)
std::istream &	operator>> (std::istream &is, GuessType &en)
std::istream &	operator>> (std::istream &is, PairType &en)
template<typename Q , typename T >
std::istream &	operator>> (std::istream &is, std::pair< T, Q > &p)
template<typename T , typename A = std::allocator<T>>
std::istream &	operator>> (std::istream &is, std::vector< T, A > &v)
template void	orgqr (Tensor< complex_real4 > &A, const Tensor< complex_real4 > &tau)
template void	orgqr (Tensor< double > &A, const Tensor< double > &tau)
template void	orgqr (Tensor< double_complex > &A, const Tensor< double_complex > &tau)
template void	orgqr (Tensor< float > &A, const Tensor< float > &tau)
template<typename T >
void	orgqr (Tensor< T > &A, const Tensor< T > &tau)
	reconstruct the orthogonal matrix Q (e.g. from QR factorization) More...
template<typename T >
void	ortho3 (Tensor< T > &x, Tensor< T > &y, Tensor< typename Tensor< T >::scalar_type > &weights, const double &thresh)
	sophisticated version of ortho2 More...
template<typename T >
void	ortho5 (Tensor< T > &x1, Tensor< T > &y1, Tensor< typename Tensor< T >::scalar_type > &w1, const Tensor< T > &x2, const Tensor< T > &y2, const Tensor< typename Tensor< T >::scalar_type > &w2, const double &thresh)
	specialized version of ortho3 More...
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	orthonormalize (const std::vector< Function< T, NDIM > > &vf_in)
	orthonormalize the vectors More...
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	orthonormalize_canonical (const std::vector< Function< T, NDIM > > &v, const double lindep)
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	orthonormalize_canonical (const std::vector< Function< T, NDIM > > &v, const Tensor< T > &ovlp, double lindep)
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	orthonormalize_cd (const std::vector< Function< T, NDIM > > &v)
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	orthonormalize_cd (const std::vector< Function< T, NDIM > > &v, Tensor< T > &ovlp)
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	orthonormalize_rrcd (const std::vector< Function< T, NDIM > > &v, const double tol)
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	orthonormalize_rrcd (const std::vector< Function< T, NDIM > > &v, Tensor< T > &ovlp, const double tol, Tensor< integer > &piv, int &rank)
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	orthonormalize_rrcd (const std::vector< Function< T, NDIM > > &v, Tensor< T > ovlp, const double tol)
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	orthonormalize_symmetric (const std::vector< Function< T, NDIM > > &v)
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	orthonormalize_symmetric (const std::vector< Function< T, NDIM > > &v, const Tensor< T > &ovlp)
	symmetric orthonormalization (see e.g. Szabo/Ostlund) More...
template<class T >
GenTensor< T >	outer (const GenTensor< T > &left, const GenTensor< T > &right, const TensorArgs final_tensor_args)
	Outer product ... result(i,j,...,p,q,...) = left(i,k,...)*right(p,q,...) More...
template<class T , class Q >
GenTensor< TENSOR_RESULT_TYPE(T, Q)>	outer (const GenTensor< T > &t1, const GenTensor< Q > &t2, const TensorArgs final_tensor_args=TensorArgs(-1.0, TT_2D))
	outer product of two Tensors, yielding a low rank tensor More...
template<typename projT , typename projQ >
std::enable_if< std::is_base_of< ProjectorBase, projT >::value, OuterProjector< projT, projQ > >::type	outer (const projT &p0, const projQ &p1)
template<class T >
Tensor< T >	outer (const Tensor< T > &left, const Tensor< T > &right)
	Outer product ... result(i,j,...,p,q,...) = left(i,k,...)*right(p,q,...) More...
template<class T >
GenTensor< T >	outer (const Tensor< T > &left, const Tensor< T > &right, const TensorArgs final_tensor_args)
	Outer product ... result(i,j,...,p,q,...) = left(i,k,...)*right(p,q,...) More...
template<class T , class Q >
GenTensor< TENSOR_RESULT_TYPE(T, Q)>	outer (const Tensor< T > &lhs2, const Tensor< Q > &rhs2, const TensorArgs final_tensor_args)
	outer product of two Tensors, yielding a low rank tensor More...
template<class T , class Q >
TensorTrain< TENSOR_RESULT_TYPE(T, Q)>	outer (const TensorTrain< T > &t1, const TensorTrain< Q > &t2)
	computes the outer product of two tensors More...
template<class T >
void	outer_result (const Tensor< T > &left, const Tensor< T > &right, Tensor< T > &result)
	Outer product ... result(i,j,...,p,q,...) = left(i,k,...)*right(p,q,...) More...
static int	parity (int i)
	Return +1 if i is even, -1 if i is odd ... perverse no if-test form. More...
template<typename T , std::size_t NDIM, std::size_t LDIM>
std::vector< Function< T, NDIM > >	partial_mul (const Function< T, NDIM > f, const std::vector< Function< T, LDIM > > g, const int particle)
	multiply a high-dimensional function with a low-dimensional function More...
template<typename T , std::size_t NDIM>
Derivative< T, NDIM >	periodic_derivative (World &world, int axis, int k=FunctionDefaults< NDIM >::get_k())
	Conveinence function returning derivative operator with periodic boundary conditions. More...
template<typename Q , int NDIM>
SeparatedConvolution< Q, NDIM >	PeriodicBSHOp (World &world, double mu, long k, double lo, double eps, Tensor< double > L)
static SeparatedConvolution< double_complex, 3 >	PeriodicBSHOperator3D (World &world, Vector< double, 3 > args, double mu, double lo, double eps, const BoundaryConditions< 3 > &bc=FunctionDefaults< 3 >::get_bc(), int k=FunctionDefaults< 3 >::get_k())
	Factory function generating separated kernel for convolution with exp(-mu*r)/(4*pi*r) in 3D. More...
static SeparatedConvolution< double_complex, 3 > *	PeriodicBSHOperatorPtr3D (World &world, Vector< double, 3 > args, double mu, double lo, double eps, const BoundaryConditions< 3 > &bc=FunctionDefaults< 3 >::get_bc(), int k=FunctionDefaults< 3 >::get_k())
	Factory function generating separated kernel for convolution with exp(-mu*r)/(4*pi*r) in 3D. More...
template<typename Q , int NDIM>
SeparatedConvolution< Q, NDIM > *	PeriodicBSHOpPtr (World &world, double mu, long k, double lo, double eps, Tensor< double > L)
template<typename Q , int NDIM>
SeparatedConvolution< Q, NDIM >	PeriodicCoulombOp (World &world, long k, double lo, double eps, Tensor< double > L)
template<typename Q , int NDIM>
SeparatedConvolution< Q, NDIM > *	PeriodicCoulombOpPtr (World &world, long k, double lo, double eps, Tensor< double > L)
static SeparatedConvolution< double_complex, 3 >	PeriodicHFExchangeOperator (World &world, Vector< double, 3 > args, double lo, double eps, const BoundaryConditions< 3 > &bc=FunctionDefaults< 3 >::get_bc(), int k=FunctionDefaults< 3 >::get_k())
	Factory function generating separated kernel for convolution with 1/r in 3D. More...
static pg_operator	pg_c2 ()
static pg_operator	pg_c2x ()
static pg_operator	pg_c2y ()
static pg_operator	pg_c2z ()
static pg_operator	pg_c4 ()
static pg_operator	pg_c4x ()
static pg_operator	pg_c4y ()
static pg_operator	pg_c4z ()
static pg_operator	pg_identity ()
static pg_operator	pg_inversion ()
static pg_operator	pg_sigma_x ()
static pg_operator	pg_sigma_xy ()
static pg_operator	pg_sigma_xz ()
static pg_operator	pg_sigma_y ()
static pg_operator	pg_sigma_yz ()
static double	phase (long i)
template<size_t NDIM>
void	plot (const std::vector< Function< double, NDIM > > &vf, const std::string &name, const std::vector< std::string > &header)
	convenience to get plot_plane and plot_cubefile More...
template<size_t NDIM>
void	plot_along (World &world, trajectory< NDIM > traj, const Function< double, NDIM > &function, std::string filename)
template<size_t NDIM>
void	plot_along (World &world, trajectory< NDIM > traj, double(*ff)(const Vector< double, NDIM > &), std::string filename)
template<size_t NDIM>
std::enable_if< NDIM==3, void >::type	plot_cubefile (World &world, const Function< double, NDIM > &f, std::string filename, std::vector< std::string > molecular_info=std::vector< std::string >(), int npoints=100, double zoom=1.0)
template<typename T , std::size_t NDIM>
void	plot_line (const char *filename, int npt, const Vector< double, NDIM > &lo, const Vector< double, NDIM > &hi, const Function< T, NDIM > &f)
	Generates ASCII file tabulating f(r) at npoints along line r=lo,...,hi. More...
template<typename T , typename U , std::size_t NDIM>
void	plot_line (const char *filename, int npt, const Vector< double, NDIM > &lo, const Vector< double, NDIM > &hi, const Function< T, NDIM > &f, const Function< U, NDIM > &g)
	Generates ASCII file tabulating f(r) and g(r) at npoints along line r=lo,...,hi. More...
template<typename T , typename U , typename V , std::size_t NDIM>
void	plot_line (const char *filename, int npt, const Vector< double, NDIM > &lo, const Vector< double, NDIM > &hi, const Function< T, NDIM > &f, const Function< U, NDIM > &g, const Function< V, NDIM > &a)
	Generates ASCII file tabulating f(r), g(r), and a(r) at npoints along line r=lo,...,hi. More...
template<typename T , typename U , typename V , typename W , std::size_t NDIM>
void	plot_line (const char *filename, int npt, const Vector< double, NDIM > &lo, const Vector< double, NDIM > &hi, const Function< T, NDIM > &f, const Function< U, NDIM > &g, const Function< V, NDIM > &a, const Function< W, NDIM > &b)
	Generates ASCII file tabulating f(r), g(r), a(r), b(r) at npoints along line r=lo,...,hi. More...
template<typename T , std::size_t NDIM>
void	plot_line (const char *filename, int npt, const Vector< double, NDIM > &lo, const Vector< double, NDIM > &hi, const std::vector< Function< T, NDIM >> &vf)
	The ordinate is distance from lo. More...
template<typename opT , std::size_t NDIM>
void	plot_line (World &world, const char *filename, int npt, const Vector< double, NDIM > &lo, const Vector< double, NDIM > &hi, const opT &op)
	Generates ASCII file tabulating f(r) at npoints along line r=lo,...,hi. More...
static void	plot_line_print_value (FILE *f, double v)
static void	plot_line_print_value (FILE *f, double_complex v)
template<size_t NDIM>
void	plot_plane (World &world, const Function< double, NDIM > &function, const std::string name)
template<size_t NDIM>
void	plot_plane (World &world, const Function< double, NDIM > &function1, const Function< double, NDIM > &function2, const Function< double, NDIM > &function3, const std::string name)
template<size_t NDIM>
void	plot_plane (World &world, const Function< double, NDIM > &function1, const Function< double, NDIM > &function2, const std::string name)
template<size_t NDIM, typename opT >
void	plot_plane (World &world, const opT &op, const std::string name, const PlotParameters param)
template<size_t NDIM>
void	plot_plane (World &world, const std::vector< Function< double, NDIM > > &vfunction, const std::string name, const PlotParameters param)
	plot a 2-d slice of a given function and the according MRA structure More...
template<size_t NDIM>
void	plot_plane (World &world, const std::vector< Function< double, NDIM > > &vfunction, const std::string name, const std::string inputfile="input")
template<typename T , std::size_t NDIM>
void	plotdx (const Function< T, NDIM > &f, const char *filename, const Tensor< double > &cell=FunctionDefaults< NDIM >::get_cell(), const std::vector< long > &npt=std::vector< long >(NDIM, 201L), bool binary=true)
	Writes an OpenDX format file with a cube/slice of points on a uniform grid. More...
template<typename T >
static void	plotpovray (const Function< T, 3 > &function, const char *filename, const Tensor< double > &cell=FunctionDefaults< 3 >::get_cell(), const std::vector< long > &npt=std::vector< long >(3, 201L))
	Writes a Povray DF3 format file with a cube of points on a uniform grid. More...
template<std::size_t NDIM>
void	plotvtk_begin (World &world, const char *filename, const Vector< double, NDIM > &plotlo, const Vector< double, NDIM > &plothi, const Vector< long, NDIM > &npt, bool binary=false)
template<typename T , std::size_t NDIM>
void	plotvtk_data (const Function< std::complex< T >, NDIM > &function, const char *fieldname, World &world, const char *filename, const Vector< double, NDIM > &plotlo, const Vector< double, NDIM > &plothi, const Vector< long, NDIM > &npt, bool binary=false, bool plot_refine=false)
	VTK data writer for complex-valued madness::functions. More...
template<typename T , std::size_t NDIM>
void	plotvtk_data (const Function< T, NDIM > &function, const char *fieldname, World &world, const char *filename, const Vector< double, NDIM > &plotlo, const Vector< double, NDIM > &plothi, const Vector< long, NDIM > &npt, bool binary=false, bool plot_refine=false)
	VTK data writer for real-valued (not complex) madness::functions. More...
template<typename T , std::size_t NDIM>
void	plotvtk_data (const T &function, const char *fieldname, World &world, const char *filename, const Vector< double, NDIM > &plotlo, const Vector< double, NDIM > &plothi, const Vector< long, NDIM > &npt, bool binary=false)
template<std::size_t NDIM>
void	plotvtk_end (World &world, const char *filename, bool binary=false)
static double	PM_q (const tensorT &S, const double *MADNESS_RESTRICT Ci, const double *MADNESS_RESTRICT Cj, int lo, int nbf)
static double	pop (std::vector< double > &v)
std::istream &	position_stream (std::istream &f, const std::string &tag, bool rewind=true)
std::istream &	position_stream_to_word (std::istream &f, const std::string &tag, const char comment, bool rewind, bool silent)
	position the input stream to tag, which must be a word (not part of a word) More...
template<int D>
int	power (int base=2)
template<int N, class T >
T	power (T const x)
template<>
int	power< 0 > (int base)
template<>
int	power< 1 > (int base)
template<>
int	power< 10 > (int base)
template<>
int	power< 12 > (int base)
template<>
int	power< 2 > (int base)
template<>
int	power< 3 > (int base)
template<>
int	power< 4 > (int base)
template<>
int	power< 5 > (int base)
template<>
int	power< 6 > (int base)
template<>
int	power< 7 > (int base)
template<>
int	power< 8 > (int base)
template<>
int	power< 9 > (int base)
template<typename T , typename... Ts>
void	print (const T &t, const Ts &... ts)
	Print items to std::cout (items separated by spaces) and terminate with a new line. More...
void	print_centered (const char *s, int column=40, bool underline=true)
	Print a string centered at the given column with optional underlining. More...
template<typename T , typename... Ts>
void	print_error (const T &t, const Ts &... ts)
	Print items to std::cerr (items separated by spaces) and terminate with a new line. More...
void	print_header1 (const std::string &s)
	big section heading More...
void	print_header2 (const std::string &s)
	medium section heading More...
void	print_header3 (const std::string &s)
	small section heading More...
std::ostream &	print_helper (std::ostream &out)
	Helper function for print. Base case. More...
template<typename T , typename... Ts>
std::ostream &	print_helper (std::ostream &out, const T &t, const Ts &... ts)
	Helper function for print. Prints the first item (t) and recursively passes on the other items. More...
void	print_justified (const char *s, int column=0, bool underline=true)
	Print a string justified on the left to start at the given column with optional underlining. More...
void	print_meminfo_disable ()
	disables print_meminfo() profiling (i.e. calling it is a no-op) More...
void	print_meminfo_enable ()
bool	print_meminfo_enabled ()
bool	print_meminfo_keep_ostream_open ()
void	print_meminfo_keep_ostream_open (bool keep_open)
std::basic_ofstream< wchar_t > &	print_meminfo_ostream (int rank, const std::string filename_prefix)
template<typename A >
void	print_seq (World &world, const A &a)
	Sequentially ordered printing of (serializable) data from every process. More...
template<typename A , typename B >
void	print_seq (World &world, const A &a, const B &b)
	Sequentially ordered printing of (serializable) data from every process. More...
template<typename A , typename B , typename C >
void	print_seq (World &world, const A &a, const B &b, const C &c)
	Sequentially ordered printing of (serializable) data from every process. More...
template<typename A , typename B , typename C , typename D >
void	print_seq (World &world, const A &a, const B &b, const C &c, const D &d)
	Sequentially ordered printing of (serializable) data from every process. More...
template<typename T , std::size_t NDIM>
void	print_size (World &world, const std::vector< Function< T, NDIM > > &v, const std::string &msg="vectorfunction")
void	print_stats (World &world)
	Print miscellaneous stats on a World. More...
template<size_t NDIM>
std::enable_if< NDIM==3, void >::type	print_tree_jsonfile (World &world, const Function< double, NDIM > &f, std::string filename)
void	printf_msg_energy_time (const std::string msg, const double energy, const double time)
template<typename T , std::size_t NDIM>
Function< T, NDIM >	project (const Function< T, NDIM > &other, int k=FunctionDefaults< NDIM >::get_k(), double thresh=FunctionDefaults< NDIM >::get_thresh(), bool fence=true)
tensorT	Q2 (const tensorT &s)
	Given overlap matrix, return rotation with 2nd order error to orthonormalize the vectors. More...
tensorT	Q3 (const tensorT &s)
	Given overlap matrix, return rotation with 3rd order error to orthonormalize the vectors. More...
Convolution1D< double_complex > *	qm_1d_free_particle_propagator (int k, double bandlimit, double timestep, double width)
template<std::size_t NDIM>
SeparatedConvolution< double_complex, NDIM >	qm_free_particle_propagator (World &world, int k, double bandlimit, double timestep)
template<std::size_t NDIM>
SeparatedConvolution< double_complex, NDIM > *	qm_free_particle_propagatorPtr (World &world, int k, double bandlimit, double timestep)
template void	qr (Tensor< double > &A, Tensor< double > &R)
template void	qr (Tensor< double_complex > &A, Tensor< double_complex > &R)
template void	qr (Tensor< float > &A, Tensor< float > &R)
template void	qr (Tensor< float_complex > &A, Tensor< float_complex > &R)
template<typename T >
void	qr (Tensor< T > &A, Tensor< T > &R)
	compute the QR decomposition of the matrix A More...
bool	quiet ()
	Check if the MADNESS runtime was initialized for quiet operation. More...
static double	r2 (const coord_3d &x)
template<class T >
T	RandomValue ()
	Random value that wraps the default Fibonacci generator. More...
template<>
double	RandomValue< double > ()
	Random double. More...
template<>
double_complex	RandomValue< double_complex > ()
	Random double_complex. More...
template<>
float	RandomValue< float > ()
	Random float. More...
template<>
float_complex	RandomValue< float_complex > ()
	Random float_complex. More...
template<>
int	RandomValue< int > ()
	Random int. More...
template<>
long	RandomValue< long > ()
	Random long. More...
template<class T >
void	RandomVector (int n, T *t)
template<>
void	RandomVector< double > (int n, double *t)
template<>
void	RandomVector< double_complex > (int n, double_complex *t)
template<>
void	RandomVector< float > (int n, float *t)
template<>
void	RandomVector< float_complex > (int n, float_complex *t)
template<typename T >
long	rank_revealing_decompose (Tensor< T > &A, Tensor< T > &U, const double thresh, Tensor< typename Tensor< T >::scalar_type > &s, Tensor< T > &scr)
static AtomCore	read_atom (TiXmlElement *e, unsigned int atn, double eprec)
static bool	read_data ()
	read_data loads the precomputed Gauss-Legendre data More...
static bool	read_data (int k)
static bool	read_orbital (TiXmlElement *e, AtomCore &ac)
static bool	read_potential (TiXmlElement *elem, AtomCore &ac, double eprec)
static bool	read_twoscale (int kmax)
static Tensor< double >	readmat (int k, FILE *file)
template<std::size_t NDIM>
Function< double, NDIM >	real (const Function< double, NDIM > &z, bool fence=true)
	Returns a new function that is the real part of the input. More...
template<std::size_t NDIM>
Function< double, NDIM >	real (const Function< double_complex, NDIM > &z, bool fence=true)
	Returns a new function that is the real part of the input. More...
template<typename Q , int NDIM>
Function< typename TensorTypeData< Q >::scalar_type, NDIM >	real (const Function< Q, NDIM > &func)
template<typename T , std::size_t NDIM>
std::vector< Function< typename Tensor< T >::scalar_type, NDIM > >	real (const std::vector< Function< T, NDIM > > &v, bool fence=true)
	return the real parts of the vector's function (if complex) More...
template<class T >
Tensor< typename Tensor< T >::scalar_type >	real (const Tensor< T > &t)
	Return a new tensor holding the real part of each element of t (complex types only) More...
double	real (double x)
template<typename T , std::size_t NDIM>
const std::vector< Function< T, NDIM > > &	reconstruct (const std::vector< Function< T, NDIM > > &v)
	reconstruct a vector of functions More...
template<typename T , std::size_t NDIM>
void	reconstruct (World &world, const std::vector< Function< T, NDIM > > &v, bool fence=true)
	Reconstruct a vector of functions. More...
template<typename T , std::size_t NDIM>
void	reconstruct (World &world, const std::vector< Function< T, NDIM > > &v, unsigned int blk=1, bool fence=true)
	Reconstruct a vector of functions. More...
void	redirectio (const World &world, bool split=false)
	redirects standard output and error to rank-specific files More...
template<class T >
GenTensor< T >	reduce (std::list< GenTensor< T > > &addends, double eps, bool are_optimal=false)
	add all the GenTensors of a given list More...
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	reduce_rank (std::vector< Function< T, NDIM > > v, double thresh=0.0, bool fence=true)
	reduces the tensor rank of the coefficient tensor (if applicable) More...
template<typename T , std::size_t NDIM>
void	refine (World &world, const std::vector< Function< T, NDIM > > &vf, bool fence=true)
	refine the functions according to the autorefine criteria More...
template<typename T , std::size_t NDIM>
void	refine_to_common_level (World &world, std::vector< Function< T, NDIM > > &vf, bool fence=true)
	refine all functions to a common (finest) level More...
void	reset_papi_measurement ()
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	rot (const std::vector< Function< T, NDIM > > &v, bool do_refine=false, bool fence=true)
	shorthand rot operator More...
template<typename T >
DistributedMatrix< T >	row_distributed_matrix (World &world, int64_t n, int64_t m, int64_t rowtile=0)
	Generates an (n,m) matrix distributed by rows (column dimension is not distributed) More...
static DistributedMatrixDistribution	row_distributed_matrix_distribution (World &world, int64_t n, int64_t m, int64_t rowtile)
	Generates an (n,m) matrix distribution distributed by rows (column dimension is not distributed) More...
template void	rr_cholesky (Tensor< double > &A, typename Tensor< double >::scalar_type tol, Tensor< integer > &piv, int &rank)
template void	rr_cholesky (Tensor< double_complex > &A, typename Tensor< double_complex >::scalar_type tol, Tensor< integer > &piv, int &rank)
template<typename T >
void	rr_cholesky (Tensor< T > &A, typename Tensor< T >::scalar_type tol, Tensor< integer > &piv, int &rank)
	Compute the rank-revealing Cholesky factorization. More...
static double	rsquared (const coordT &r)
template<class T , std::size_t NDIM>
void	save (const Function< T, NDIM > &f, const std::string name)
template<typename T , size_t NDIM>
void	save_function (const std::vector< Function< T, NDIM > > &f, const std::string name)
	save a vector of functions More...
template<typename T >
std::vector< std::shared_ptr< ScalarResult< T > > >	scalar_result_shared_ptr_vector (World &world, std::size_t n)
	helper function to create a vector of ScalarResult, circumventing problems with the constructors More...
response_space	scale (response_space a, double b)
template<typename T , typename Q , std::size_t NDIM>
void	scale (World &world, std::vector< Function< T, NDIM > > &v, const Q factor, bool fence=true)
	Scales inplace a vector of functions by the same. More...
template<typename T , typename Q , std::size_t NDIM>
void	scale (World &world, std::vector< Function< T, NDIM > > &v, const Q factor, const unsigned int blk=1, const bool fence=true)
	Scales inplace a vector of functions by the same. More...
template<typename T , typename Q , std::size_t NDIM>
void	scale (World &world, std::vector< Function< T, NDIM > > &v, const std::vector< Q > &factors, bool fence=true)
	Scales inplace a vector of functions by distinct values. More...
template<typename T , typename Q , std::size_t NDIM>
void	scale (World &world, std::vector< Function< T, NDIM > > &v, const std::vector< Q > &factors, const unsigned int blk=1, const bool fence=true)
	Scales inplace a vector of functions by distinct values. More...
response_space	scale_2d (World &world, const response_space &a, const Tensor< double > &b)
template<typename Archive >
void	serialize_am_args (Archive &&)
	Terminate argument serialization. More...
template<typename Archive , typename T , typename... argT>
void	serialize_am_args (Archive &&archive, T &&t, argT &&... args)
	Argument serialization. More...
template<typename T , std::size_t NDIM>
void	set_impl (std::vector< Function< T, NDIM >> &v, const std::vector< std::shared_ptr< FunctionImpl< T, NDIM >>> vimpl)
void	set_thread_tag (int tag)
void	set_thread_tag (ThreadTag tag)
template<typename T , std::size_t NDIM>
void	set_thresh (World &world, std::vector< Function< T, NDIM > > &v, double thresh, bool fence=true)
	Sets the threshold in a vector of functions. More...
template<std::size_t NDIM>
static void	sim_to_user (const Vector< double, NDIM > &xsim, Vector< double, NDIM > &xuser)
	Convert simulation coords ([0,1]^ndim) to user coords (FunctionDefaults<NDIM>::get_cell()) More...
template<typename T , std::size_t NDIM>
static Key< NDIM >	simpt2key (const Vector< T, NDIM > &pt, Level n)
template<typename T , std::size_t NDIM>
double	size_of (const intermediateT< T, NDIM > &im)
	Returns the size of an intermediate. More...
static double	slater_functor (const coord_3d &x)
double	slater_radius (int atomic_number)
static SeparatedConvolution< double, 3 >	SlaterF12Operator (World &world, double mu, double lo, double eps, const BoundaryConditions< 3 > &bc=FunctionDefaults< 3 >::get_bc(), int k=FunctionDefaults< 3 >::get_k())
static SeparatedConvolution< double, 3 > *	SlaterF12OperatorPtr (World &world, double mu, double lo, double eps, const BoundaryConditions< 3 > &bc=FunctionDefaults< 3 >::get_bc(), int k=FunctionDefaults< 3 >::get_k())
	Factory function generating separated kernel for convolution with (1 - exp(-mu*r))/(2 mu) in 3D. More...
static SeparatedConvolution< double, 3 >	SlaterF12sqOperator (World &world, double mu, double lo, double eps, const BoundaryConditions< 3 > &bc=FunctionDefaults< 3 >::get_bc(), int k=FunctionDefaults< 3 >::get_k())
static SeparatedConvolution< double, 3 > *	SlaterF12sqOperatorPtr (World &world, double mu, double lo, double eps, const BoundaryConditions< 3 > &bc=FunctionDefaults< 3 >::get_bc(), int k=FunctionDefaults< 3 >::get_k())
template<std::size_t NDIM = 3>
static SeparatedConvolution< double, NDIM >	SlaterOperator (World &world, double mu, double lo, double eps, const BoundaryConditions< NDIM > &bc=FunctionDefaults< NDIM >::get_bc(), int k=FunctionDefaults< NDIM >::get_k())
	Factory function generating separated kernel for convolution with exp(-mu*r) in 3D. More...
static SeparatedConvolution< double, 3 > *	SlaterOperatorPtr (World &world, double mu, double lo, double eps, const BoundaryConditions< 3 > &bc=FunctionDefaults< 3 >::get_bc(), int k=FunctionDefaults< 3 >::get_k())
template<std::size_t NDIM>
static SeparatedConvolution< double, NDIM > *	SlaterOperatorPtr_ND (World &world, double mu, double lo, double eps, const BoundaryConditions< NDIM > &bc=FunctionDefaults< NDIM >::get_bc(), int k=FunctionDefaults< NDIM >::get_k())
double	smoothed_density (double r)
	Charge density corresponding to smoothed 1/r potential. More...
double	smoothed_potential (double r)
	Smoothed 1/r potential. More...
double	smoothing_parameter (double Z, double eprec)
	Returns radius for smoothing nuclear potential with energy precision eprec. More...
template<std::size_t NDIM>
static SeparatedConvolution< double, NDIM >	SmoothingOperator (World &world, double eps, const BoundaryConditions< NDIM > &bc=FunctionDefaults< NDIM >::get_bc(), int k=FunctionDefaults< NDIM >::get_k())
static SeparatedConvolution< double, 3 >	SmoothingOperator3D (World &world, double eps, const BoundaryConditions< 3 > &bc=FunctionDefaults< 3 >::get_bc(), int k=FunctionDefaults< 3 >::get_k())
	SPEC (double, double_complex, double_complex)
	SPEC (double, float_complex, float_complex)
	SPEC (float, double, double)
	SPEC (float, double_complex, double_complex)
	SPEC (float, float_complex, float_complex)
	SPEC (float_complex, double_complex, double_complex)
	SPEC (int, double, double)
	SPEC (int, double_complex, double_complex)
	SPEC (int, float, float)
	SPEC (int, float_complex, float_complex)
	SPEC (int, long, long)
	SPEC (long, double, double)
	SPEC (long, double_complex, double_complex)
	SPEC (long, float, float)
	SPEC (long, float_complex, float_complex)
template<typename T , std::size_t NDIM>
Function< T, NDIM >	square (const Function< T, NDIM > &f, bool fence=true)
	Create a new function that is the square of f - global comm only if not reconstructed. More...
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	square (World &world, const std::vector< Function< T, NDIM > > &v, bool fence=true)
	Computes the square of a vector of functions — q[i] = v[i]**2. More...
template<typename T , std::size_t NDIM>
void	standard (World &world, std::vector< Function< T, NDIM > > &v, bool fence=true)
	Generates standard form of a vector of functions. More...
template<typename T , std::size_t NDIM>
void	standard (World &world, std::vector< Function< T, NDIM > > &v, unsigned int blk=1, bool fence=true)
	Generates standard form of a vector of functions. More...
static void	START_TIMER (World &world)
void	startup (World &world, int argc, char **argv, bool doprint=false, bool make_stdcout_nice_to_reals=true)
template<typename T >
T	stheta_fd (const T &x)
template<typename T >
static std::string	stringify (T arg)
template<typename L , typename R , std::size_t NDIM>
Function< TENSOR_RESULT_TYPE(L, R), NDIM >	sub (const Function< L, NDIM > &left, const Function< R, NDIM > &right, bool fence=true)
	Same as operator- but with optional fence and no automatic compression. More...
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	sub (World &world, const std::vector< Function< T, NDIM > > &a, const std::vector< Function< R, NDIM > > &b, bool fence=true)
	Returns new vector of functions — q[i] = a[i] - b[i]. More...
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	sub (World &world, const std::vector< Function< T, NDIM > > &a, const std::vector< Function< R, NDIM > > &b, bool fence=true, unsigned int blk=1)
	Returns new vector of functions — q[i] = a[i] - b[i]. More...
template<typename T , std::size_t NDIM>
Function< T, NDIM >	sum (World &world, const std::vector< Function< T, NDIM > > &f, bool fence=true)
	Returns new function — q = sum_i f[i]. More...
template<>
void	svd (char jobu, char jobvt, integer m, integer n, complex_real4 *A, integer lda, real4 *S, complex_real4 *U, integer ldu, complex_real4 *VT, integer ldvt)
template<>
void	svd (char jobu, char jobvt, integer m, integer n, complex_real8 *A, integer lda, real8 *S, complex_real8 *U, integer ldu, complex_real8 *VT, integer ldvt)
template<>
void	svd (char jobu, char jobvt, integer m, integer n, real4 *A, integer lda, real4 *S, real4 *U, integer ldu, real4 *VT, integer ldvt)
template<>
void	svd (char jobu, char jobvt, integer m, integer n, real8 *A, integer lda, real8 *S, real8 *U, integer ldu, real8 *VT, integer ldvt)
template<typename T >
void	svd (char jobu, char jobvt, integer m, integer n, T *A, integer lda, typename detail::real_type< T >::type *S, T *U, integer ldu, T *VT, integer ldvt)
	Compute the SVD via LAPACK. More...
template void	svd (const Tensor< double > &a, Tensor< double > &U, Tensor< Tensor< double >::scalar_type > &s, Tensor< double > &VT)
template void	svd (const Tensor< double_complex > &a, Tensor< double_complex > &U, Tensor< Tensor< double_complex >::scalar_type > &s, Tensor< double_complex > &VT)
template void	svd (const Tensor< float > &a, Tensor< float > &U, Tensor< Tensor< float >::scalar_type > &s, Tensor< float > &VT)
template void	svd (const Tensor< float_complex > &a, Tensor< float_complex > &U, Tensor< Tensor< float_complex >::scalar_type > &s, Tensor< float_complex > &VT)
template<typename T >
std::tuple< Tensor< T >, Tensor< typename Tensor< T >::scalar_type >, Tensor< T > >	svd (const Tensor< T > &A)
	SVD - MATLAB syntax. More...
template<typename T >
void	svd (const Tensor< T > &a, Tensor< T > &U, Tensor< typename Tensor< T >::scalar_type > &s, Tensor< T > &VT)
	Compute the singluar value decomposition of an n-by-m matrix using *gesvd. More...
template void	svd_result (Tensor< double > &a, Tensor< double > &U, Tensor< Tensor< double >::scalar_type > &s, Tensor< double > &VT, Tensor< double > &work)
template void	svd_result (Tensor< double_complex > &a, Tensor< double_complex > &U, Tensor< Tensor< double_complex >::scalar_type > &s, Tensor< double_complex > &VT, Tensor< double_complex > &work)
template void	svd_result (Tensor< float > &a, Tensor< float > &U, Tensor< Tensor< float >::scalar_type > &s, Tensor< float > &VT, Tensor< float > &work)
template void	svd_result (Tensor< float_complex > &a, Tensor< float_complex > &U, Tensor< Tensor< float_complex >::scalar_type > &s, Tensor< float_complex > &VT, Tensor< float_complex > &work)
template<typename T >
void	svd_result (Tensor< T > &a, Tensor< T > &U, Tensor< typename Tensor< T >::scalar_type > &s, Tensor< T > &VT, Tensor< T > &work)
	same as svd, but it optimizes away the tensor construction: a = U * diag(s) * VT More...
template<typename T , typename U >
void	swap (RemoteReference< T > &l, RemoteReference< U > &r)
	Swap the two remote references. More...
template<typename T , std::size_t N>
void	swap (Vector< T, N > &l, Vector< T, N > &r)
	Swap the contents of two Vectors. More...
template<typename keyT , typename valueT , typename hashfunT >
void	swap (WorldContainer< keyT, valueT, hashfunT > &dc0, WorldContainer< keyT, valueT, hashfunT > &dc1)
	Swaps the content of two WorldContainer objects. It should be called on all nodes. More...
template<typename T , std::size_t NDIM>
std::enable_if_t< NDIM%2==0, Function< T, NDIM > >	swap_particles (const Function< T, NDIM > &f)
	swap particles 1 and 2 More...
template void	syev (const Tensor< double > &A, Tensor< double > &V, Tensor< Tensor< double >::scalar_type > &e)
template void	syev (const Tensor< double_complex > &A, Tensor< double_complex > &V, Tensor< Tensor< double_complex >::scalar_type > &e)
template<typename T >
std::tuple< Tensor< typename Tensor< T >::scalar_type >, Tensor< T > >	syev (const Tensor< T > &A)
	Solves symmetric or Hermitian eigenvalue problem - MATLAB syntax. More...
template<typename T >
void	syev (const Tensor< T > &A, Tensor< T > &V, Tensor< typename Tensor< T >::scalar_type > &e)
	Real-symmetric or complex-Hermitian eigenproblem. More...
template void	sygv (const Tensor< double > &A, const Tensor< double > &B, int itype, Tensor< double > &V, Tensor< Tensor< double >::scalar_type > &e)
template void	sygv (const Tensor< double_complex > &A, const Tensor< double_complex > &B, int itype, Tensor< double_complex > &V, Tensor< Tensor< double_complex >::scalar_type > &e)
template<typename T >
void	sygv (const Tensor< T > &A, const Tensor< T > &B, int itype, Tensor< T > &V, Tensor< typename Tensor< T >::scalar_type > &e)
	Generalized real-symmetric or complex-Hermitian eigenproblem. More...
template<typename T >
void	sygvp (World &world, const Tensor< T > &a, const Tensor< T > &B, int itype, Tensor< T > &V, Tensor< typename Tensor< T >::scalar_type > &e)
unsigned int	symbol_to_atomic_number (const std::string &symbol)
template<typename T , std::size_t NDIM>
Function< T, NDIM >	symmetrize (const Function< T, NDIM > &f, const std::string symmetry, bool fence=true)
	symmetrize a function More...
template<typename Q >
Tensor< Q >	tensor_abs (const Tensor< std::complex< Q > > &c)
template<typename Q >
Tensor< std::complex< Q > >	tensor_real2complex (const Tensor< Q > &r)
template<typename T , typename R , std::size_t NDIM>
	TENSOR_RESULT_TYPE (T, R) inner(const Function< T
	Computes the scalar/inner product between two functions. More...
template<typename T , typename opT , std::size_t NDIM>
	TENSOR_RESULT_TYPE (T, typename opT::value_type) inner(const Function< T
	Computes the scalar/inner product between an MRA function and an external functor. More...
template<typename T , typename opT , std::size_t NDIM>
	TENSOR_RESULT_TYPE (T, typename opT::value_type) inner(const opT &g
	Computes the scalar/inner product between an MRA function and an external functor. More...
template<typename Q >
Tensor< Q >	tensor_ximag (const Tensor< std::complex< Q > > &c)
template<typename Q >
Tensor< Q >	tensor_xreal (const Tensor< std::complex< Q > > &c)
static double	test_1d_functor (const coord_1d &x)
bool	test_autoc ()
template<typename T >
double	test_cholesky (int n)
template<typename T >
int	test_exchange (World &world)
template<typename T >
double	test_gelss (int n, int nrhs)
template<typename T >
double	test_gesv (int n, int nrhs)
template<typename T >
double	test_inverse (int n)
	Example and test code for interface to LAPACK SVD interfae. More...
template<typename T >
double	test_qr ()
bool	test_rnlp ()
template<typename T >
double	test_rr_cholesky (int n)
template<typename T >
double	test_svd (int n, int m)
	Example and test code for interface to LAPACK SVD interfae. More...
template<typename T >
double	test_syev (int n)
template<typename T >
double	test_sygv (int n)
bool	test_tensor_lapack ()
	Test the Tensor-LAPACK interface ... currently always returns true! More...
bool	test_two_scale_coefficients ()
static double	testf (int n, double x)
void	threadpool_wait_policy (WaitPolicy policy, int sleep_duration_in_microseconds=0)
static void	time_transform (World &world, int &mflopslo, int &mflopshi)
auto	to_conjugate_response_matrix (const X_space &x) -> response_matrix
auto	to_conjugate_X_space (const response_matrix &x) -> X_space
	response_matrix [x,y] -> Xspace X.x=y X.y=conjugate(x) More...
auto	to_flattened_vector (const X_space &x) -> vector_real_function_3d
	Flattens all response functions into a single vector of functions. More...
void	to_json (nlohmann::json &j)
auto	to_response_matrix (const X_space &x) -> response_matrix
auto	to_response_vector (const vector_real_function_3d &vec) -> vector_real_function_3d
auto	to_X_space (const response_matrix &x) -> X_space
template<typename R , typename Q >
GenTensor< TENSOR_RESULT_TYPE(R, Q)>	transform (const GenTensor< R > &t, const Tensor< Q > &c)
template<typename R , typename Q >
SVDTensor< TENSOR_RESULT_TYPE(R, Q)>	transform (const SVDTensor< R > &t, const Tensor< Q > &c)
template<class T , class Q >
Tensor< TENSOR_RESULT_TYPE(T, Q)>	transform (const Tensor< T > &t, const Tensor< Q > &c)
	Transform all dimensions of the tensor t by the matrix c. More...
template<class T , class Q >
TensorTrain< TENSOR_RESULT_TYPE(T, Q)>	transform (const TensorTrain< T > &t, const Tensor< Q > &c)
	transform each dimension with the same operator matrix More...
template<typename L , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(L, R), NDIM > >	transform (World &world, const std::vector< Function< L, NDIM > > &v, const Tensor< R > &c, const double tol, const unsigned int blki=1, const bool fence)
template<typename L , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(L, R), NDIM > >	transform (World &world, const std::vector< Function< L, NDIM > > &v, const Tensor< R > &c, double tol, bool fence)
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	transform (World &world, const std::vector< Function< T, NDIM > > &v, const DistributedMatrix< R > &c, bool fence=true)
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	transform (World &world, const std::vector< Function< T, NDIM > > &v, const Tensor< R > &c, bool fence=true)
	Transforms a vector of functions according to new[i] = sum[j] old[j]*c[j,i]. More...
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	transform (World &world, const std::vector< Function< T, NDIM > > &v, const Tensor< R > &c, unsigned int blki=1, unsigned int blkj=1, const bool fence=true)
	Transforms a vector of functions according to new[i] = sum[j] old[j]*c[j,i]. More...
template<typename R , typename Q >
GenTensor< TENSOR_RESULT_TYPE(R, Q)>	transform_dir (const GenTensor< R > &t, const Tensor< Q > &c, const int axis)
template<typename R , typename Q >
SVDTensor< TENSOR_RESULT_TYPE(R, Q)>	transform_dir (const SVDTensor< R > &t, const Tensor< Q > &c, const int axis)
template<class T , class Q >
Tensor< TENSOR_RESULT_TYPE(T, Q)>	transform_dir (const Tensor< T > &t, const Tensor< Q > &c, int axis)
	Transforms one dimension of the tensor t by the matrix c, returns new contiguous tensor. More...
template<class T , class Q >
TensorTrain< TENSOR_RESULT_TYPE(T, Q)>	transform_dir (const TensorTrain< T > &t, const Tensor< Q > &c, const int axis)
	Transforms one dimension of the tensor t by the matrix c, returns new contiguous tensor. More...
template<typename T , typename R , std::size_t NDIM>
std::vector< Function< TENSOR_RESULT_TYPE(T, R), NDIM > >	transform_reconstructed (World &world, const std::vector< Function< T, NDIM > > &v, const Tensor< R > &c, bool fence=true)
	Transforms a vector of functions according to new[i] = sum[j] old[j]*c[j,i]. More...
template<class T >
Tensor< T >	transpose (const Tensor< T > &t)
	Returns a new deep copy of the transpose of the input tensor. More...
response_space	transpose (response_space &f)
auto	transposeResponseMatrix (const response_matrix &x) -> response_matrix
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	truncate (std::vector< Function< T, NDIM > > v, double tol=0.0, bool fence=true)
	Truncates a vector of functions. More...
void	truncate (World &world, response_space &v, double tol, bool fence)
template<typename T , std::size_t NDIM>
void	truncate (World &world, std::vector< Function< T, NDIM > > &v, double tol=0.0, bool fence=true)
	Truncates a vector of functions. More...
template<typename T , std::size_t NDIM>
void	truncate (World &world, std::vector< Function< T, NDIM > > &v, double tol=0.0, unsigned int blk=1, bool fence=true)
	Truncates a vector of functions. More...
bool	try_two_locks (const Mutex &m1, const Mutex &m2)
	Attempt to acquire two locks without blocking holding either one. More...
template<typename T >
TensorTrain< T >	tt_identity (const long ndim, const long k)
	compute the n-D identity operator with k elements per dimension More...
bool	two_scale_coefficients (int k, Tensor< double > *h0, Tensor< double > *h1, Tensor< double > *g0, Tensor< double > *g1)
	Return the two scale coefficients in the Legendre basis. More...
bool	two_scale_hg (int k, Tensor< double > *hg)
std::string	type (const EnergyType &n)
std::string	type (const GuessType &n)
std::string	type (const PairType &n)
	TYPEINFO (0, int, false, true, int, double)
	TYPEINFO (1, long, false, true, long, double)
	TYPEINFO (2, float, false, true, float, float)
	TYPEINFO (3, double, false, true, double, double)
	TYPEINFO (4, float_complex, true, true, float, float)
	TYPEINFO (5, double_complex, true, true, double, double)
template<typename Q , typename opT , std::size_t NDIM>
Function< typename opT::resultT, NDIM >	unary_op (const Function< Q, NDIM > &func, const opT &op, bool fence=true)
	Out of place application of unary operation to function values with optional fence. More...
template<typename Q , typename opT , std::size_t NDIM>
Function< typename opT::resultT, NDIM >	unary_op_coeffs (const Function< Q, NDIM > &func, const opT &op, bool fence=true)
	Out of place application of unary operation to scaling function coefficients with optional fence. More...
std::string	unique_fileid ()
	creates a unique filename, using PBS ID if available More...
template<std::size_t NDIM>
static double	unitfunctor (const Vector< double, NDIM > &x)
template<typename T , std::size_t N>
Vector< T, N >	unitvec (const Vector< T, N > &r, const double eps=1.e-6)
	Construct a unit-Vector that has the same direction as r. More...
template<std::size_t NDIM>
static void	user_to_sim (const Vector< double, NDIM > &xuser, Vector< double, NDIM > &xsim)
	Convert user coords (cell[][]) to simulation coords ([0,1]^ndim) More...
template<typename T , typename... Ts>
Vector< T, sizeof...(Ts)+1 >	vec (T t, Ts... ts)
	Factory function for creating a madness::Vector. More...
template<typename T >
std::vector< T >	vector_factory (const T &v0)
	Returns a std::vector<T> initialized from the arguments. More...
template<typename T >
std::vector< T >	vector_factory (const T &v0, const T &v1)
	Returns a std::vector<T> initialized from the arguments. More...
template<typename T >
std::vector< T >	vector_factory (const T &v0, const T &v1, const T &v2)
	Returns a std::vector<T> initialized from the arguments. More...
template<typename T >
std::vector< T >	vector_factory (const T &v0, const T &v1, const T &v2, const T &v3)
	Returns a std::vector<T> initialized from the arguments. More...
template<typename T >
std::vector< T >	vector_factory (const T &v0, const T &v1, const T &v2, const T &v3, const T &v4)
	Returns a std::vector<T> initialized from the arguments. More...
template<typename T >
std::vector< T >	vector_factory (const T &v0, const T &v1, const T &v2, const T &v3, const T &v4, const T &v5)
	Returns a std::vector<T> initialized from the arguments. More...
template<typename T >
std::vector< T >	vector_factory (const T &v0, const T &v1, const T &v2, const T &v3, const T &v4, const T &v5, const T &v6)
	Returns a std::vector<T> initialized from the arguments. More...
template<typename T >
std::vector< T >	vector_factory (const T &v0, const T &v1, const T &v2, const T &v3, const T &v4, const T &v5, const T &v6, const T &v7)
	Returns a std::vector<T> initialized from the arguments. More...
template<typename T , std::size_t NDIM>
static void	verify_tree (World &world, const std::vector< Function< T, NDIM > > &v)
template<typename L , typename R , std::size_t D>
std::vector< Function< TENSOR_RESULT_TYPE(L, R), D > >	vmulXX (const Function< L, D > &left, const std::vector< Function< R, D > > &vright, double tol, bool fence=true)
	Use the vmra/mul(...) interface instead. More...
double	wall_time ()
	Returns the wall time in seconds relative to an arbitrary origin. More...
WorldMemInfo *	world_mem_info ()
	Returns pointer to internal structure. More...
void	write_molecules_to_file (const Molecule &molecule, const std::string &geo_file)
int	x_rks_s__ (const double *r__, double *f, double *dfdra)
int	x_uks_s__ (double *ra, double *rb, double *f, double *dfdra, double *dfdrb)
static double	xf (const coord_3d &x)
void	xterm_debug (const char *path, const char *display)
void	xterm_debug_breakpoint ()
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	zero_functions (World &world, int n)
	Generates a vector of zero functions. More...
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	zero_functions (World &world, int n, bool fence=true)
	Generates a vector of zero functions (reconstructed) More...
template<typename T , std::size_t NDIM>
std::vector< Function< T, NDIM > >	zero_functions_compressed (World &world, int n, bool fence=true)
	Generates a vector of zero functions (compressed) More...
print_meminfo
These functions are useful to instrument aggregate (not fine-grained, like WorldMemInfo) memory profiling. Note To make this functionality usable must set the ENABLE_MEM_PROFILE CMake cache variable to ON
template<typename String >
void	print_meminfo (int rank, const String &tag, const std::string filename_prefix=std::string("MEMORY"), bool verbose=false)
	print aggregate memory stats to file filename_prefix.<rank> , tagged with tag More...

Variables
static const std::vector< Slice >	___ = vector_factory(_,_,_,_,_,_)
	Entire dimension. More...
static Tensor< double >	_c
static Tensor< double >	_cread
const double	acut1e_6 = 0.25
static const AtomicData	atomic_data [NUMBER_OF_ATOMS_IN_TABLE]
static const char *	autocorr_filename = "autocorr"
ThreadBinder	binder
const double	c_b14 = 1.333333333333333333333333333333
const double	c_b2 = 0.333333333333333333333333333333333
const double	c_b7 = 0.333333333333333333333333333333
static class madness::twoscale_cache_class	cache [kmax+1]
static double	cutoff_radius = 5.0
static bool	data_is_read = false
static const long	default_jdim = 5551212
Random	default_random_generator
	The default random number stream. More...
static const string	dir = "coredata/"
static const Tag	DYNAMIC_TAG_BASE = 1024
NDIM &	f
static const char *	filename = "gaussleg"
NDIM const Function< R, NDIM > &	g
template<typename T , typename Archive >
constexpr bool	has_freestanding_default_serialize_v = madness::meta::is_detected_v<madness::has_freestanding_default_serialize_t,T,Archive>
template<typename T , typename Archive >
constexpr bool	has_freestanding_default_serialize_with_size_v = madness::meta::is_detected_v<madness::has_freestanding_default_serialize_with_size_t,T,Archive>
template<typename T , typename Archive >
constexpr bool	has_freestanding_serialize_v = madness::meta::is_detected_v<madness::has_freestanding_serialize_t,T,Archive>
template<typename T , typename Archive >
constexpr bool	has_freestanding_serialize_with_size_v = madness::meta::is_detected_v<madness::has_freestanding_serialize_with_size_t,T,Archive>
template<typename T , typename Archive >
constexpr bool	has_freestanding_serialize_with_version_v = madness::meta::is_detected_v<madness::has_freestanding_serialize_with_version_t,T,Archive>
template<typename T , typename Archive >
constexpr bool	has_member_serialize_v = madness::meta::is_detected_v<madness::has_member_serialize_t,T,Archive>
template<typename T , typename Archive >
constexpr bool	has_member_serialize_with_version_v = madness::meta::is_detected_v<madness::has_member_serialize_with_version_t,T,Archive>
template<typename T , typename Archive >
constexpr bool	has_nonmember_load_and_store_v = has_nonmember_load_v<T, Archive> && has_nonmember_store_v<T, Archive>
template<typename T , typename Archive >
constexpr bool	has_nonmember_load_v = madness::meta::is_detected_v<madness::has_nonmember_load_t,T,Archive>
template<typename T , typename Archive >
constexpr bool	has_nonmember_serialize_v = madness::meta::is_detected_v<madness::has_nonmember_serialize_t,T,Archive>
template<typename T , typename Archive >
constexpr bool	has_nonmember_store_v = madness::meta::is_detected_v<madness::has_nonmember_store_t,T,Archive>
template<typename T , typename Archive >
constexpr bool	has_nonmember_wrap_load_and_store_v = has_nonmember_wrap_load_v<T, Archive> && has_nonmember_wrap_store_v<T, Archive>
template<typename T , typename Archive >
constexpr bool	has_nonmember_wrap_load_v = madness::meta::is_detected_v<madness::has_nonmember_wrap_load_t,T,Archive>
template<typename T , typename Archive >
constexpr bool	has_nonmember_wrap_store_v = madness::meta::is_detected_v<madness::has_nonmember_wrap_store_t,T,Archive>
template<typename T >
constexpr bool	is_always_serializable
template<typename T >
constexpr bool	is_any_function_pointer_v = is_any_function_pointer<T>::value
template<typename T >
constexpr bool	is_archive_v = meta::is_detected_v<is_archive_defined_t,T>
template<typename Archive , typename T >
constexpr bool	is_default_serializable_v = is_default_serializable<Archive, T>::value
template<typename Archive , typename T >
constexpr bool	is_default_serializable_v< Archive, const T > = is_default_serializable_v<Archive, T>
template<typename T >
constexpr bool	is_function_pointer_v = is_function_pointer<T>::value
template<typename T >
constexpr bool	is_input_archive_v = meta::is_detected_v<is_input_archive_defined_t, T>
template<typename T >
constexpr bool	is_iostreammable_v = is_istreammable_v<T> && is_ostreammable_v<T>
	providing automatic support for serializing to/from std streams requires bidirectional streammability More...
template<typename T >
constexpr bool	is_istreammable_v = is_istreammable<T>::value
	Shortcut for is_istreammable<T>::value. More...
template<typename T >
constexpr bool	is_ostreammable_v = is_ostreammable<T>::value
	Shortcut for is_ostreammable<T>::value. More...
template<typename T >
constexpr bool	is_output_archive_v = meta::is_detected_v<is_output_archive_defined_t, T>
template<typename Archive , typename T >
constexpr bool	is_serializable_v
template<typename Archive , typename T >
constexpr bool	is_serializable_v< Archive, const T > = is_serializable_v<Archive, T>
template<typename Archive >
constexpr const bool	is_text_archive_v = is_text_archive<Archive>::value
	is_text_archive_v is a shorthand for is_text_archive<A>::value More...
template<typename T >
constexpr bool	is_trivially_serializable_v = is_trivially_serializable<T>::value
template<typename Archive , typename T >
constexpr bool	is_user_serializable_v
template<typename Archive , typename T >
constexpr bool	is_user_serializable_v< Archive, const T > = is_user_serializable_v<Archive, T>
static int	kcur = -1
static const int	kmax = 60
static const int	kmax_autoc = 30
static int	kread = -1
static bool	loaded = 0
static double	mask_factor = 5.0
static const int	max_npt = 64
static const int	MAXK = 30
	The maximum wavelet order presently supported. More...
static const int	MAXLEVEL = 8*sizeof(Translation)-2
	The maximum depth of refinement possible. More...
static double	nn1 [100]
static const unsigned int	NUMBER_OF_ATOMS_IN_TABLE = 110
const int	NUMEVENTS = 0
static double	phi_norms [100]
static Tensor< double >	points [max_npt+1]
static bool	print_timings = false
static std::string	reduction_alg ="divide_conquer"
static std::atomic< bool >	rmi_task_is_running = false
static std::vector< double >	sss
const char *	tensor_type_names []
static AtomicInt	threadcounter
static std::vector< double >	ttt
static const char *	twoscale_filename = "coeffs"
static Tensor< double >	weights [max_npt+1]

Detailed Description

File holds all helper structures necessary for the CC_Operator and CC2 class.

Namespace for all elements and tools of MADNESS.

this block needs to be known before nonlinsol.h is included (happens when nemo is included) better move this to nonlinsol.h

We provide an abstract base class FunctionFunctorInterface, of which we derive (as of now) the following classes:

• ElementaryInterface (formerly FunctorInterfaceWrapper) to wrap elementary functions
• ElectronRepulsionInterface to provide 1/r12, which is not elementarily accessible
• CompositeFunctionInterface to provide on-demand coefficients of pair functions

Each of these Interfaces can be used in a FunctionFactory to set up a Function

If you can recall the Intel hypercubes, their comm lib used GOP as the abbreviation.

Typedef Documentation

am_handlerT

typedef void(* madness::am_handlerT) (const AmArg &)

Type of AM handler functions.

complex_convolution_1d

typedef SeparatedConvolution<double_complex,1> madness::complex_convolution_1d

complex_convolution_1d_ptr

typedef std::shared_ptr<complex_convolution_1d> madness::complex_convolution_1d_ptr

complex_convolution_2d

typedef SeparatedConvolution<double_complex,2> madness::complex_convolution_2d

complex_convolution_2d_ptr

typedef std::shared_ptr<complex_convolution_2d> madness::complex_convolution_2d_ptr

complex_convolution_3d

typedef SeparatedConvolution<double_complex,3> madness::complex_convolution_3d

complex_convolution_3d_ptr

typedef std::shared_ptr<complex_convolution_3d> madness::complex_convolution_3d_ptr

complex_convolution_4d

typedef SeparatedConvolution<double_complex,4> madness::complex_convolution_4d

complex_convolution_4d_ptr

typedef std::shared_ptr<complex_convolution_4d> madness::complex_convolution_4d_ptr

complex_convolution_5d

typedef SeparatedConvolution<double_complex,5> madness::complex_convolution_5d

complex_convolution_5d_ptr

typedef std::shared_ptr<complex_convolution_5d> madness::complex_convolution_5d_ptr

complex_convolution_6d

typedef SeparatedConvolution<double_complex,6> madness::complex_convolution_6d

complex_convolution_6d_ptr

typedef std::shared_ptr<complex_convolution_6d> madness::complex_convolution_6d_ptr

complex_derivative_1d

typedef Derivative<double_complex,1> madness::complex_derivative_1d

complex_derivative_2d

typedef Derivative<double_complex,2> madness::complex_derivative_2d

complex_derivative_3d

typedef Derivative<double_complex,3> madness::complex_derivative_3d

complex_derivative_4d

typedef Derivative<double_complex,4> madness::complex_derivative_4d

complex_derivative_5d

typedef Derivative<double_complex,5> madness::complex_derivative_5d

complex_derivative_6d

typedef Derivative<double_complex,6> madness::complex_derivative_6d

complex_factory_1d

typedef FunctionFactory<double_complex,1> madness::complex_factory_1d

complex_factory_2d

typedef FunctionFactory<double_complex,2> madness::complex_factory_2d

complex_factory_3d

typedef FunctionFactory<double_complex,3> madness::complex_factory_3d

complex_factory_4d

typedef FunctionFactory<double_complex,4> madness::complex_factory_4d

complex_factory_5d

typedef FunctionFactory<double_complex,5> madness::complex_factory_5d

complex_factory_6d

typedef FunctionFactory<double_complex,6> madness::complex_factory_6d

complex_funcimpl_1d

typedef FunctionImpl<double_complex,1> madness::complex_funcimpl_1d

complex_funcimpl_2d

typedef FunctionImpl<double_complex,2> madness::complex_funcimpl_2d

complex_funcimpl_3d

typedef FunctionImpl<double_complex,3> madness::complex_funcimpl_3d

complex_funcimpl_4d

typedef FunctionImpl<double_complex,4> madness::complex_funcimpl_4d

complex_funcimpl_5d

typedef FunctionImpl<double_complex,5> madness::complex_funcimpl_5d

complex_funcimpl_6d

typedef FunctionImpl<double_complex,6> madness::complex_funcimpl_6d

complex_function_1d

typedef Function<double_complex,1> madness::complex_function_1d

complex_function_2d

typedef Function<double_complex,2> madness::complex_function_2d

complex_function_3d

typedef Function<double_complex,3> madness::complex_function_3d

complex_function_4d

typedef Function<double_complex,4> madness::complex_function_4d

complex_function_5d

typedef Function<double_complex,5> madness::complex_function_5d

complex_function_6d

typedef Function<double_complex,6> madness::complex_function_6d

complex_functionT

typedef Function<std::complex<double>, 3> madness::complex_functionT

complex_functor_1d

typedef std::shared_ptr< FunctionFunctorInterface<double_complex,1> > madness::complex_functor_1d

complex_functor_2d

typedef std::shared_ptr< FunctionFunctorInterface<double_complex,2> > madness::complex_functor_2d

complex_functor_3d

typedef std::shared_ptr< FunctionFunctorInterface<double_complex,3> > madness::complex_functor_3d

complex_functor_4d

typedef std::shared_ptr< FunctionFunctorInterface<double_complex,4> > madness::complex_functor_4d

complex_functor_5d

typedef std::shared_ptr< FunctionFunctorInterface<double_complex,5> > madness::complex_functor_5d

complex_functor_6d

typedef std::shared_ptr< FunctionFunctorInterface<double_complex,6> > madness::complex_functor_6d

complex_operatorT

typedef Convolution1D<double_complex> madness::complex_operatorT

complex_tensor

typedef Tensor<double_complex> madness::complex_tensor

CONDITION_VARIABLE_TYPE

typedef PthreadConditionVariable madness::CONDITION_VARIABLE_TYPE

coord_1d

typedef Vector<double,1> madness::coord_1d

coord_2d

typedef Vector<double,2> madness::coord_2d

coord_3d

typedef Vector< double, 3 > madness::coord_3d

coord_4d

typedef Vector<double,4> madness::coord_4d

coord_5d

typedef Vector<double,5> madness::coord_5d

coord_6d

typedef Vector< double, 6 > madness::coord_6d

coordT

typedef Vector< double, 3 > madness::coordT

cvecfuncT

typedef std::vector<complex_functionT> madness::cvecfuncT

decay_tuple

template<typename T >

using madness::decay_tuple = typedef decltype(decay_types(std::declval<T>()))

distmatT

typedef DistributedMatrix<double> madness::distmatT

DistributedID

typedef std::pair<uniqueidT, std::size_t> madness::DistributedID

Distributed ID which is used to identify objects.

factoryT

typedef FunctionFactory< double, 3 > madness::factoryT

function_defaults_1d

typedef FunctionDefaults<1> madness::function_defaults_1d

function_defaults_2d

typedef FunctionDefaults<2> madness::function_defaults_2d

function_defaults_3d

typedef FunctionDefaults<3> madness::function_defaults_3d

function_defaults_4d

typedef FunctionDefaults<4> madness::function_defaults_4d

function_defaults_5d

typedef FunctionDefaults<5> madness::function_defaults_5d

function_defaults_6d

typedef FunctionDefaults<6> madness::function_defaults_6d

functionT

typedef Function< double, 3 > madness::functionT

functorT

typedef std::shared_ptr< FunctionFunctorInterface< double, 3 > > madness::functorT

future_to_ref_t

template<typename T >

using madness::future_to_ref_t = typedef typename future_to_ref< T >::type

has_freestanding_default_serialize_t

template<typename T , typename Archive >

using madness::has_freestanding_default_serialize_t = typedef decltype(default_serialize(std::declval<Archive&>(), std::declval<T&>()))

helps to detect that T supports freestanding default_serialize function

Note

use in combination with madness::meta::is_detected_v

has_freestanding_default_serialize_with_size_t

template<typename T , typename Archive , typename = std::enable_if_t<std::is_pointer_v<T>>>

using madness::has_freestanding_default_serialize_with_size_t = typedef decltype(default_serialize(std::declval<Archive&>(), std::declval<const T&>(), 1u))

helps to detect that T=U* supports freestanding default_serialize function

Note

use in combination with madness::meta::is_detected_v

has_freestanding_serialize_t

template<typename T , typename Archive >

using madness::has_freestanding_serialize_t = typedef decltype(serialize(std::declval<Archive&>(), std::declval<T&>()))

helps to detect that T supports freestanding serialize function

Note

use in combination with madness::meta::is_detected_v

has_freestanding_serialize_with_size_t

template<typename T , typename Archive , typename = std::enable_if_t<std::is_pointer_v<T>>>

using madness::has_freestanding_serialize_with_size_t = typedef decltype(serialize(std::declval<Archive&>(), std::declval<T&>(), 1u))

helps to detect that T=U* supports freestanding serialize function

Note

use in combination with madness::meta::is_detected_v

has_freestanding_serialize_with_version_t

template<typename T , typename Archive , typename = std::enable_if_t<!std::is_pointer_v<T>>>

using madness::has_freestanding_serialize_with_version_t = typedef decltype(serialize(std::declval<Archive&>(), std::declval<T&>(), 0u))

helps to detect that T supports freestanding serialize function that accepts version

Note

use in combination with madness::meta::is_detected_v

has_member_serialize_t

template<typename T , typename Archive >

using madness::has_member_serialize_t = typedef decltype(std::declval<T&>().serialize(std::declval<Archive&>()))

helps to detect that T has a member serialization method that accepts single argument of type Archive

Note

use in combination with madness::meta::is_detected_v

has_member_serialize_with_version_t

template<typename T , typename Archive >

using madness::has_member_serialize_with_version_t = typedef decltype(std::declval<T&>().serialize(std::declval<Archive&>(),0u))

helps to detect that T has a member serialization method that accepts one argument of type Archive and an unsigned version

Note

use in combination with madness::meta::is_detected_v

has_nonmember_load_t

template<typename T , typename Archive >

using madness::has_nonmember_load_t = typedef decltype(madness::archive::ArchiveLoadImpl<Archive, T>::load(std::declval<Archive&>(), std::declval<T&>()))

helps to detect that T supports nonintrusive asymmetric serialization via load

Note

use in combination with madness::meta::is_detected_v

has_nonmember_serialize_t

template<typename T , typename Archive >

using madness::has_nonmember_serialize_t = typedef decltype(madness::archive::ArchiveSerializeImpl<Archive, T>::serialize(std::declval<Archive&>(), std::declval<T&>()))

helps to detect that T supports nonintrusive symmetric serialization

Note

use in combination with madness::meta::is_detected_v

has_nonmember_store_t

template<typename T , typename Archive >

using madness::has_nonmember_store_t = typedef decltype(madness::archive::ArchiveStoreImpl<Archive, T>::store(std::declval<Archive&>(), std::declval<T&>()))

helps to detect that T supports nonintrusive asymmetric serialization via store

Note

use in combination with madness::meta::is_detected_v

has_nonmember_wrap_load_t

template<typename T , typename Archive >

using madness::has_nonmember_wrap_load_t = typedef decltype(madness::archive::ArchiveImpl<Archive, T>::wrap_load(std::declval<Archive&>(), std::declval<T&>()))

helps to detect that T supports nonintrusive asymmetric serialization via wrap_load

Note

use in combination with madness::meta::is_detected_v

has_nonmember_wrap_store_t

template<typename T , typename Archive >

using madness::has_nonmember_wrap_store_t = typedef decltype(madness::archive::ArchiveImpl<Archive, T>::wrap_store(std::declval<Archive&>(), std::declval<T&>()))

helps to detect that T supports nonintrusive asymmetric serialization via wrap_store

Note

use in combination with madness::meta::is_detected_v

hashT

typedef std::size_t madness::hashT

The hash value type.

intermediateT

template<typename T , std::size_t NDIM>

using madness::intermediateT = typedef Pairs<Function<T,NDIM> >

f12 and g12 intermediates of the form <f1|op|f2> (with op=f12 or op=g12) will be saved using the pair structure

is_archive_defined_t

template<typename T >

using madness::is_archive_defined_t = typedef typename is_archive<std::remove_reference_t<std::remove_cv_t<T> >>::type

is_input_archive_defined_t

template<typename T >

using madness::is_input_archive_defined_t = typedef typename is_input_archive<std::remove_reference_t<std::remove_cv_t<T> >>::type

is_output_archive_defined_t

template<typename T >

using madness::is_output_archive_defined_t = typedef typename is_output_archive<std::remove_reference_t<std::remove_cv_t<T> >>::type

json

using madness::json = typedef nlohmann::json

Level

typedef int madness::Level

NonlinearSolver

typedef NonlinearSolverND<3> madness::NonlinearSolver

NonlinearVectorSolver_3d

typedef XNonlinearSolver<std::vector<Function<double,3> >,double,vector_function_allocator<double,3> > madness::NonlinearVectorSolver_3d

NonlinearVectorSolver_6d

typedef XNonlinearSolver<std::vector<Function<double,6> >,double,vector_function_allocator<double,6> > madness::NonlinearVectorSolver_6d

operatorT

typedef SeparatedConvolution<double, 3> madness::operatorT

pairvecfuncT

typedef std::pair<vecfuncT, vecfuncT> madness::pairvecfuncT

pmap_1d

typedef std::shared_ptr< WorldDCPmapInterface< Key<1> > > madness::pmap_1d

pmap_2d

typedef std::shared_ptr< WorldDCPmapInterface< Key<2> > > madness::pmap_2d

pmap_3d

typedef std::shared_ptr< WorldDCPmapInterface< Key<3> > > madness::pmap_3d

pmap_4d

typedef std::shared_ptr< WorldDCPmapInterface< Key<4> > > madness::pmap_4d

pmap_5d

typedef std::shared_ptr< WorldDCPmapInterface< Key<5> > > madness::pmap_5d

pmap_6d

typedef std::shared_ptr< WorldDCPmapInterface< Key<6> > > madness::pmap_6d

pmapT

typedef std::shared_ptr<WorldDCPmapInterface<Key<3> > > madness::pmapT

poperatorT

typedef std::shared_ptr<operatorT> madness::poperatorT

real_convolution_1d

typedef SeparatedConvolution<double,1> madness::real_convolution_1d

real_convolution_1d_ptr

typedef std::shared_ptr<real_convolution_1d> madness::real_convolution_1d_ptr

real_convolution_2d

typedef SeparatedConvolution<double,2> madness::real_convolution_2d

real_convolution_2d_ptr

typedef std::shared_ptr<real_convolution_2d> madness::real_convolution_2d_ptr

real_convolution_3d

typedef SeparatedConvolution<double,3> madness::real_convolution_3d

real_convolution_3d_ptr

typedef std::shared_ptr<real_convolution_3d> madness::real_convolution_3d_ptr

real_convolution_4d

typedef SeparatedConvolution<double,4> madness::real_convolution_4d

real_convolution_4d_ptr

typedef std::shared_ptr<real_convolution_4d> madness::real_convolution_4d_ptr

real_convolution_5d

typedef SeparatedConvolution<double,5> madness::real_convolution_5d

real_convolution_5d_ptr

typedef std::shared_ptr<real_convolution_5d> madness::real_convolution_5d_ptr

real_convolution_6d

typedef SeparatedConvolution<double,6> madness::real_convolution_6d

real_convolution_6d_ptr

typedef std::shared_ptr<real_convolution_6d> madness::real_convolution_6d_ptr

real_derivative_1d

typedef Derivative<double,1> madness::real_derivative_1d

real_derivative_2d

typedef Derivative<double,2> madness::real_derivative_2d

real_derivative_3d

typedef Derivative<double,3> madness::real_derivative_3d

real_derivative_4d

typedef Derivative<double,4> madness::real_derivative_4d

real_derivative_5d

typedef Derivative<double,5> madness::real_derivative_5d

real_derivative_6d

typedef Derivative<double,6> madness::real_derivative_6d

real_factory_1d

typedef FunctionFactory<double,1> madness::real_factory_1d

real_factory_2d

typedef FunctionFactory<double,2> madness::real_factory_2d

real_factory_3d

typedef FunctionFactory<double,3> madness::real_factory_3d

real_factory_4d

typedef FunctionFactory<double,4> madness::real_factory_4d

real_factory_5d

typedef FunctionFactory<double,5> madness::real_factory_5d

real_factory_6d

typedef FunctionFactory<double,6> madness::real_factory_6d

real_funcimpl_1d

typedef FunctionImpl<double,1> madness::real_funcimpl_1d

real_funcimpl_2d

typedef FunctionImpl<double,2> madness::real_funcimpl_2d

real_funcimpl_3d

typedef FunctionImpl<double,3> madness::real_funcimpl_3d

real_funcimpl_4d

typedef FunctionImpl<double,4> madness::real_funcimpl_4d

real_funcimpl_5d

typedef FunctionImpl<double,5> madness::real_funcimpl_5d

real_funcimpl_6d

typedef FunctionImpl<double,6> madness::real_funcimpl_6d

real_function_1d

typedef Function<double,1> madness::real_function_1d

real_function_2d

typedef Function<double,2> madness::real_function_2d

real_function_3d

typedef Function<double,3> madness::real_function_3d

real_function_4d

typedef Function<double,4> madness::real_function_4d

real_function_5d

typedef Function<double,5> madness::real_function_5d

real_function_6d

typedef Function<double,6> madness::real_function_6d

real_functor_1d

typedef std::shared_ptr< FunctionFunctorInterface<double,1> > madness::real_functor_1d

real_functor_2d

typedef std::shared_ptr< FunctionFunctorInterface<double,2> > madness::real_functor_2d

real_functor_3d

typedef std::shared_ptr< FunctionFunctorInterface<double,3> > madness::real_functor_3d

real_functor_4d

typedef std::shared_ptr< FunctionFunctorInterface<double,4> > madness::real_functor_4d

real_functor_5d

typedef std::shared_ptr< FunctionFunctorInterface<double,5> > madness::real_functor_5d

real_functor_6d

typedef std::shared_ptr< FunctionFunctorInterface<double,6> > madness::real_functor_6d

real_tensor

typedef Tensor<double> madness::real_tensor

rel_fn_ptr_t

typedef std::ptrdiff_t madness::rel_fn_ptr_t

remove_fcvr_t

template<typename T >

using madness::remove_fcvr_t = typedef typename remove_fcvr<T>::type

remove_future_t

template<typename T >

using madness::remove_future_t = typedef typename remove_future< T >::type

C++11 version of REMFUTURE.

response_matrix

typedef std::vector< vector_real_function_3d > madness::response_matrix

rmi_handlerT

typedef void(* madness::rmi_handlerT) (void *buf, size_t nbyte)

This is the generic low-level interface for a message handler.

SCALABLE_MUTEX_TYPE

typedef Mutex madness::SCALABLE_MUTEX_TYPE

SPINLOCK_TYPE

typedef Mutex madness::SPINLOCK_TYPE

subspaceT

typedef std::vector<pairvecfuncT> madness::subspaceT

tensor_complex

typedef Tensor<double_complex> madness::tensor_complex

tensor_real

typedef Tensor<double> madness::tensor_real

tensorT

typedef Tensor< double > madness::tensorT

Translation

typedef int64_t madness::Translation

vecfuncT

typedef std::vector< real_function_3d > madness::vecfuncT

vector_complex

typedef std::vector< std::complex<double> > madness::vector_complex

vector_complex_function_1d

typedef std::vector<complex_function_1d> madness::vector_complex_function_1d

vector_complex_function_2d

typedef std::vector<complex_function_2d> madness::vector_complex_function_2d

vector_complex_function_3d

typedef std::vector<complex_function_3d> madness::vector_complex_function_3d

vector_complex_function_4d

typedef std::vector<complex_function_4d> madness::vector_complex_function_4d

vector_complex_function_5d

typedef std::vector<complex_function_5d> madness::vector_complex_function_5d

vector_complex_function_6d

typedef std::vector<complex_function_6d> madness::vector_complex_function_6d

vector_coord_1d

typedef std::vector< Vector<double,1> > madness::vector_coord_1d

vector_coord_2d

typedef std::vector< Vector<double,2> > madness::vector_coord_2d

vector_coord_3d

typedef std::vector< Vector<double,3> > madness::vector_coord_3d

vector_coord_4d

typedef std::vector< Vector<double,4> > madness::vector_coord_4d

vector_coord_5d

typedef std::vector< Vector<double,5> > madness::vector_coord_5d

vector_coord_6d

typedef std::vector< Vector<double,6> > madness::vector_coord_6d

vector_real

typedef std::vector<double> madness::vector_real

vector_real_function_1d

typedef std::vector<real_function_1d> madness::vector_real_function_1d

vector_real_function_2d

typedef std::vector<real_function_2d> madness::vector_real_function_2d

vector_real_function_3d

typedef std::vector<real_function_3d> madness::vector_real_function_3d

vector_real_function_4d

typedef std::vector<real_function_4d> madness::vector_real_function_4d

vector_real_function_5d

typedef std::vector<real_function_5d> madness::vector_real_function_5d

vector_real_function_6d

typedef std::vector<real_function_6d> madness::vector_real_function_6d

Enumeration Type Documentation

BCType

enum madness::BCType

Enumerator
BC_ZERO
BC_PERIODIC
BC_FREE
BC_DIRICHLET
BC_ZERONEUMANN
BC_NEUMANN

CalcType

enum madness::CalcType

Calculation Types used by CC2.

Enumerator
CT_UNDEFINED
CT_MP2
CT_MP3
CT_CC2
CT_LRCCS
CT_LRCC2
CT_CISPD
CT_ADC2
CT_TDHF
CT_TEST

CCState

enum madness::CCState

Type of Pairs used by CC_Pair2 class.

Enumerator
CCSTATE_UNDEFINED
GROUND_STATE
EXCITED_STATE

EnergyType

enum madness::EnergyType

Enumerator
PROJECTED_ENERGYTYPE
HYLLERAAS_ENERGYTYPE
UNKNOWN_ENERGYTYPE

FuncType

enum madness::FuncType

FuncTypes used by the CC_function_6d structure Types of Functions used by CC_function class

Enumerator
UNDEFINED
HOLE
PARTICLE
MIXED
RESPONSE

GuessType

enum madness::GuessType

Enumerator
PARTIAL_WAVE_GUESSTYPE
FROM_FILE_GUESSTYPE
PREDEFINED_GUESSTYPE
SCF_GUESSTYPE
EXOP_GUESSTYPE
EMPTY_GUESSTYPE
PSI4_GUESSTYPE
UNKNOWN_GUESSTYPE

OpType

enum madness::OpType

operator types

Enumerator
OT_UNDEFINED
OT_ONE
OT_G12	indicates the identity
OT_SLATER	1/r
OT_GAUSS	exp(-r)
OT_F12	exp(-r2)
OT_FG12	1-exp(-r)
OT_F212	(1-exp(-r))/r
OT_F2G12	(1-exp(-r))^2
OT_BSH	(1-exp(-r))^2/r = 1/r + exp(-2r)/r - 2 exp(-r)/r
OT_SIZE	exp(-r)/r for ending loops

PairType

enum madness::PairType

Enumerator
MP2_PAIRTYPE
CISPD_PAIRTYPE
ALL_PAIRTYPE
NONE_PAIRTYPE
UNKNOWN_PAIRTYPE

PotentialType

enum madness::PotentialType

CC2 Singles Potentials.

Enumerator
POT_UNDEFINED
POT_F3D_
POT_s3a_
POT_s3b_
POT_s3c_
POT_s5a_
POT_s5b_
POT_s5c_
POT_s2b_
POT_s2c_
POT_s4a_
POT_s4b_
POT_s4c_
POT_s6_
POT_ccs_
POT_cis_
POT_singles_

TensorType

enum madness::TensorType

low rank representations of tensors (see gentensor.h)

Enumerator
TT_FULL
TT_2D
TT_TENSORTRAIN

ThreadTag

enum madness::ThreadTag

bitfield describing thread type

Enumerator
ThreadTag_NonMADNESS
ThreadTag_MADNESS
ThreadTag_Main

TreeState

enum madness::TreeState

Enumerator
reconstructed	s coeffs at the leaves only
compressed	d coeffs in internal nodes, s and d coeffs at the root
nonstandard	s and d coeffs in internal nodes
nonstandard_with_leaves	like nonstandard, with s coeffs at the leaves
nonstandard_after_apply	s and d coeffs, state after operator application
redundant	s coeffs everywhere
redundant_after_merge	s coeffs everywhere, must be summed up to yield the result
on_demand	no coeffs anywhere, but a functor providing if necessary
unknown

WaitPolicy

enum madness::WaitPolicy

strong

wait policies supported by ConditionVariable/DQueue/ThreadPool

Enumerator
Busy
Yield
Sleep

Function Documentation

_()

static const Slice madness::_ ( 0  , -  1, 1    )

static

Referenced by madness::FunctionCommonData< T, NDIM >::_init_twoscale(), madness::SCF::analyze_vectors(), madness::SeparatedConvolution< Q, NDIM >::apply2_lowdim(), madness::projector_irrep::apply_symmetry_operators(), madness::Znemo::canonicalize(), madness::MolecularOrbitals< T, NDIM >::compute_center(), madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::MacroTaskExchangeSimple::compute_offdiagonal_batch_in_symmetric_matrix(), madness::SVDTensor< T >::compute_svd(), madness::SVDTensor< T >::concatenate(), concatenate_columns(), concatenate_rows(), madness::TensorTrain< T >::decompose(), diag_and_transform(), DF::diagonalize(), madness::FunctionImpl< T, NDIM >::dirac_convolution_op(), madness::RandomizedMatrixDecomposition< T >::do_compute_range(), madness::FunctionImpl< T, NDIM >::do_inner_localX(), madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::MacroTaskExchangeSimple::MacroTaskPartitionerExchange::do_partitioning(), madness::Coulomb< T, NDIM >::MacroTaskCoulomb::MacroTaskPartitionerCoulomb::do_partitioning(), madness::FunctionImpl< T, NDIM >::do_project_out(), madness::Solver< T, NDIM >::do_rhs(), madness::Solver< T, NDIM >::do_rhs_simple(), MiniDFT::doit(), doit(), doplot(), doplotptk(), madness::SRConf< T >::emul(), madness::TensorTrain< T >::emul(), madness::GFit< T, NDIM >::f12_fit(), madness::GFit< T, NDIM >::f12sq_fit(), fixphases(), madness::TensorTrain< T >::gaxpy(), madness::SRConf< T >::get_configs(), madness::Znemo::hcore_guess(), madness::Solver< T, NDIM >::initial_guess(), madness::SCF::initial_guess(), madness::Localizer::localize_boys(), madness::Localizer::localize_new(), main(), madness::TDHF::make_cis_matrix(), madness::TwoElectronInterface< T, NDIM >::make_coeff(), madness::FunctionDefaults< NDIM >::make_default_cell(), madness::FunctionDefaults< NDIM >::make_default_cell_width(), madness::Zcis::make_guess(), madness::TDHF::make_guess_from_initial_diagonalization(), madness::Nemo::make_incomplete_hessian_response_part(), madness::SRConf< T >::make_slices(), madness::RandomizedMatrixDecomposition< T >::make_SVD_decaying_matrix(), madness::SeparatedConvolution< Q, NDIM >::make_tt_representation(), madness::SRConf< T >::make_vector_with_weights(), madness::SRConf< T >::normalize(), madness::FunctionImpl< T, NDIM >::NS_fcube_for_mul(), madness::FunctionImpl< T, NDIM >::NScoeffs2values(), madness::FunctionImpl< T, NDIM >::project_out_op< LDIM >::operator()(), madness::FunctionImpl< T, NDIM >::do_mirror::operator()(), madness::FunctionImpl< T, NDIM >::do_map_and_mirror::operator()(), BoysLocalization::operator()(), madness::GenTensor< T >::operator+(), madness::SliceLowRankTensor< T >::operator+=(), madness::GenTensor< T >::operator+=(), madness::SliceLowRankTensor< T >::operator-=(), madness::GenTensor< T >::operator-=(), orth(), ortho3(), ortho5(), orthonormalize_canonical(), madness::PNO::pno_compress(), madness::FunctionImpl< T, NDIM >::print_plane_local(), projector_external_dof(), madness::MolecularOptimizer::projector_external_dof(), rank_revealing_decompose(), madness::FunctionDefaults< NDIM >::recompute_cell_info(), madness::LowRankFunction< T, NDIM, LDIM >::reorthonormalize(), madness::FunctionDefaults< NDIM >::set_cubic_cell(), solve(), madness::Nemo::solve_cphf(), madness::TensorTrain< T >::splitdim(), test_asymmetric(), test_sliced_addition(), test_sliced_assignment(), test_syev(), test_sygv(), madness::FunctionImpl< T, NDIM >::tnorm(), madness::TensorTrain< T >::truncate(), madness::Localizer::undo_reordering(), madness::Localizer::undo_rotation(), madness::SubspaceK< T, NDIM >::update_subspace(), madness::Subspace< T, NDIM >::update_subspace(), madness::SCF::update_subspace(), Subspace::update_subspace(), and madness::FunctionImpl< T, NDIM >::vtransform().

_reverse()

static const Slice madness::_reverse ( -  1, 0  , -  1  )

static

Entire tensor.

abs() [1/4]

template<std::size_t NDIM>

Function<double,NDIM> madness::abs	(	const Function< double_complex, NDIM > &	z,
		bool	fence = true
	)

Returns a new function that is the absolute value of the input.

References unary_op().

abs() [2/4]

template<typename Q , int NDIM>

Function<typename TensorTypeData<Q>::scalar_type,NDIM> madness::abs

(

const Function< Q, NDIM > &

func

)

References func(), and unary_op_coeffs().

abs() [3/4]

template<typename T , std::size_t NDIM>

Function<T,NDIM> madness::abs	(	const Function< T, NDIM > &	f,
		bool	fence = true
	)

Create a new function that is the abs of f - global comm only if not reconstructed.

References madness::Function< T, NDIM >::abs(), copy(), f, and PROFILE_FUNC.

abs() [4/4]

double madness::abs

(

double

x

)

Referenced by madness::BandlimitedPropagator::BandlimitedPropagator(), SphericalHarmonics::SphericalHarmonics(), madness::Solver< T, NDIM >::apply_hf_exchange(), madness::OEP::compute_delta_rho(), madness::F12Potentials::compute_f12_correction(), madness::F12Potentials::compute_f12_pair_energies(), madness::F12Potentials::compute_f12_pair_energy(), QuasiNewton::hessian_update_bfgs(), QuasiNewton::hessian_update_sr1(), QuasiNewton::line_search(), main(), make_pw_matrix(), QuasiNewton::new_search_direction(), madness::detail::abssqop< NDIM >::operator()(), madness::detail::absop< NDIM >::operator()(), madness::abs_square_op< Q, NDIM >::operator()(), madness::abs_op< Q, NDIM >::operator()(), madness::detail::absinplace< T, NDIM >::operator()(), madness::detail::abssquareinplace< T, NDIM >::operator()(), madness::WorldAbsMaxOp< T >::operator()(), madness::WorldAbsMinOp< T >::operator()(), madness::Znemo::save_orbitals(), tensor_abs(), test_chin_chen(), OptimizationTargetInterface::test_gradient(), test_hermiticity(), test_kinetic(), test_partial_inner(), test_rnlp(), test_trotter(), testPeriodicCoulomb3d(), madness::SubspaceK< T, NDIM >::update_subspace(), madness::Subspace< T, NDIM >::update_subspace(), and Subspace::update_subspace().

abs_square() [1/3]

template<typename Q , int NDIM>

Function<typename TensorTypeData<Q>::scalar_type,NDIM> madness::abs_square

(

const Function< Q, NDIM > &

func

)

References func(), and unary_op().

Referenced by abssq(), madness::Znemo::compute_current_density(), madness::Zcis::compute_potentials(), madness::Zcis::iterate(), test_coulomb(), and test_XCOperator().

abs_square() [2/3]

template<typename T , std::size_t NDIM>

std::enable_if<!TensorTypeData<T>::iscomplex, Function<T,NDIM> >::type madness::abs_square	(	const Function< T, NDIM > &	f,
		bool	fence = true
	)

Create a new function that is the abs_square of f - global comm only if not reconstructed.

References madness::Function< T, NDIM >::abs_square(), copy(), f, and PROFILE_FUNC.

abs_square() [3/3]

template<typename T , std::size_t NDIM>

std::enable_if<TensorTypeData<T>::iscomplex, Function<typename Tensor<T>::scalar_type,NDIM> >::type madness::abs_square	(	const Function< T, NDIM > &	f,
		bool	fence = true
	)

Create a new function that is the abs_square of f - global comm only if not reconstructed.

References f, and unary_op().

abssq() [1/2]

template<std::size_t NDIM>

Function<double,NDIM> madness::abssq	(	const Function< double_complex, NDIM > &	z,
		bool	fence = true
	)

Returns a new function that is the square of the absolute value of the input.

References unary_op().

Referenced by madness::NemoBase::compute_density(), madness::Solver< T, NDIM >::compute_rho(), madness::Solver< T, NDIM >::compute_rho_slow(), madness::SCF::make_density(), make_density(), squaremod(), squaremod_large(), and squaremod_small().

abssq() [2/2]

template<typename T , std::size_t NDIM>

std::vector< Function<typename Tensor<T>::scalar_type,NDIM> > madness::abssq	(	World &	world,
		const std::vector< Function< T, NDIM > > &	v,
		bool	fence = true
	)

Computes the square of a vector of functions — q[i] = abs(v[i])**2.

References abs_square(), madness::WorldGopInterface::fence(), madness::World::gop, reconstruct(), and v.

add() [1/7]

template<typename L , typename R , std::size_t NDIM>

Function<TENSOR_RESULT_TYPE(L,R),NDIM> madness::add	(	const Function< L, NDIM > &	left,
		const Function< R, NDIM > &	right,
		bool	fence = true
	)

Same as operator+ but with optional fence and no automatic compression.

References gaxpy_oop(), L, R, and TENSOR_RESULT_TYPE().

Referenced by add(), doit(), madness::TDHF::get_tda_potential(), operator+(), and TEST_CASE().

add() [2/7]

template<typename T , typename R , std::size_t NDIM>

std::vector< Function<TENSOR_RESULT_TYPE(T,R), NDIM> > madness::add	(	World &	world,
		const Function< T, NDIM > &	a,
		const std::vector< Function< R, NDIM > > &	b,
		bool	fence = true
	)

Returns new vector of functions — q[i] = a + b[i].

References a, add(), b, compress(), madness::WorldGopInterface::fence(), madness::World::gop, NDIM, PROFILE_BLOCK, R, T(), and TENSOR_RESULT_TYPE().

add() [3/7]

template<typename T , typename R , std::size_t NDIM>

std::vector< Function<TENSOR_RESULT_TYPE(T,R), NDIM> > madness::add	(	World &	world,
		const Function< T, NDIM > &	a,
		const std::vector< Function< R, NDIM > > &	b,
		bool	fence = true,
		unsigned int	blk = 1
	)

Returns new vector of functions — q[i] = a + b[i].

References a, add(), b, compress(), madness::WorldGopInterface::fence(), madness::World::gop, NDIM, PROFILE_BLOCK, R, T(), and TENSOR_RESULT_TYPE().

add() [4/7]

template<typename T , typename R , std::size_t NDIM>

std::vector< Function<TENSOR_RESULT_TYPE(T,R), NDIM> > madness::add ( World &  world, const std::vector< Function< R, NDIM > > &  b, const Function< T, NDIM > &  a, bool  fence = true  )

inline

References a, add(), and b.

add() [5/7]

template<typename T , typename R , std::size_t NDIM>

std::vector< Function<TENSOR_RESULT_TYPE(T,R), NDIM> > madness::add ( World &  world, const std::vector< Function< R, NDIM > > &  b, const Function< T, NDIM > &  a, bool  fence = true, unsigned int  blk = 1  )

inline

References a, add(), and b.

add() [6/7]

template<typename T , typename R , std::size_t NDIM>

std::vector< Function<TENSOR_RESULT_TYPE(T,R), NDIM> > madness::add	(	World &	world,
		const std::vector< Function< T, NDIM > > &	a,
		const std::vector< Function< R, NDIM > > &	b,
		bool	fence = true
	)

Returns new vector of functions — q[i] = a[i] + b[i].

References a, add(), b, compress(), madness::WorldGopInterface::fence(), madness::World::gop, MADNESS_ASSERT, NDIM, PROFILE_BLOCK, R, T(), and TENSOR_RESULT_TYPE().

add() [7/7]

template<typename T , typename R , std::size_t NDIM>

std::vector< Function<TENSOR_RESULT_TYPE(T,R), NDIM> > madness::add	(	World &	world,
		const std::vector< Function< T, NDIM > > &	a,
		const std::vector< Function< R, NDIM > > &	b,
		bool	fence = true,
		unsigned int	blk = 1
	)

Returns new vector of functions — q[i] = a[i] + b[i].

References a, add(), b, compress(), madness::WorldGopInterface::fence(), madness::World::gop, MADNESS_ASSERT, NDIM, PROFILE_BLOCK, R, T(), and TENSOR_RESULT_TYPE().

adq()

template<typename funcT >

funcT::returnT madness::adq	(	double	lo,
		double	hi,
		const funcT &	func,
		double	thresh
	)

References adq1(), func(), gauss_legendre(), lo, and thresh.

Referenced by madness::detail::adqtest::runtest().

adq1()

template<typename funcT >

funcT::returnT madness::adq1	(	double	lo,
		double	hi,
		const funcT &	func,
		double	thresh,
		int	n,
		const double *	x,
		const double *	w,
		int	level
	)

References d(), do_adq(), e(), func(), lo, madness::detail::norm(), thresh, and w().

Referenced by adq(), and madness::GenericConvolution1D< Q, opT >::rnlp().

aligned_add() [1/3]

void madness::aligned_add	(	long	n,
		double *MADNESS_RESTRICT	a,
		const double *MADNESS_RESTRICT	b
	)

Referenced by main().

aligned_add() [2/3]

void madness::aligned_add	(	long	n,
		double_complex *MADNESS_RESTRICT	a,
		const double_complex *MADNESS_RESTRICT	b
	)

aligned_add() [3/3]

template<typename T , typename Q >

static void madness::aligned_add ( long  n, T *MADNESS_RESTRICT  a, const Q *MADNESS_RESTRICT  b  )

inlinestatic

References a, and b.

aligned_axpy() [1/4]

template<>

void madness::aligned_axpy ( long  n, double *MADNESS_RESTRICT  a, const double *MADNESS_RESTRICT  b, double  s  )

inline

References a, madness::cblas::axpy(), and b.

aligned_axpy() [2/4]

template<>

void madness::aligned_axpy ( long  n, double_complex *MADNESS_RESTRICT  a, const double_complex *MADNESS_RESTRICT  b, double  s  )

inline

References a, madness::cblas::axpy(), and b.

aligned_axpy() [3/4]

template<>

void madness::aligned_axpy ( long  n, double_complex *MADNESS_RESTRICT  a, const double_complex *MADNESS_RESTRICT  b, double_complex  s  )

inline

References a, madness::cblas::axpy(), and b.

aligned_axpy() [4/4]

template<typename T , typename Q >

static void madness::aligned_axpy ( long  n, T *MADNESS_RESTRICT  a, const T *MADNESS_RESTRICT  b, Q  s  )

inlinestatic

References a, and b.

Referenced by madness::SeparatedConvolution< Q, NDIM >::apply_transformation(), and madness::SeparatedConvolution< Q, NDIM >::apply_transformation2().

aligned_sub() [1/3]

void madness::aligned_sub	(	long	n,
		double *MADNESS_RESTRICT	a,
		const double *MADNESS_RESTRICT	b
	)

Referenced by main().

aligned_sub() [2/3]

void madness::aligned_sub	(	long	n,
		double_complex *MADNESS_RESTRICT	a,
		const double_complex *MADNESS_RESTRICT	b
	)

aligned_sub() [3/3]

template<typename T , typename Q >

static void madness::aligned_sub ( long  n, T *MADNESS_RESTRICT  a, const Q *MADNESS_RESTRICT  b  )

inlinestatic

References a, and b.

aligned_zero()

template<typename T >

static void madness::aligned_zero ( long  n, T *  a  )

inlinestatic

References a, and T().

Referenced by madness::Tensor< T >::allocate().

alloc_am_arg()

AmArg* madness::alloc_am_arg ( std::size_t  nbyte )

inline

Allocates a new AmArg with nbytes of user data ... delete with free_am_arg.

Referenced by copy_am_arg(), and new_am_arg().

analytical_slater_functor()

static double madness::analytical_slater_functor ( double  rho )

static

References pow().

append()

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::append	(	const std::vector< Function< T, NDIM > > &	lhs,
		const std::vector< Function< T, NDIM > > &	rhs
	)

combine two vectors

References v.

Referenced by madness::TDHF::apply_excitation_operators(), madness::CCPairFunction< T, NDIM >::collect_same_types(), madness::F12Potentials::compute_cispd_f12_energies(), madness::Zcis::compute_residuals(), madness::PNOPairs::extract(), flatten(), madness::StrongOrthogonalityProjector< T, NDIM >::get_vectors_for_outer_product(), madness::PNO::grow_rank(), madness::BasisFunctions::guess_contracted_virtuals_from_file(), madness::BasisFunctions::guess_virtuals_from_file(), madness::BasisFunctions::guess_virtuals_internal(), madness::BasisFunctions::guess_with_exop(), madness::PNO::initialize_pairs(), madness::Zcis::iterate(), madness::Zcis::make_guess(), madness::LRFunctorF12< T, NDIM, LDIM >::norm2(), madness::LowRankFunction< T, NDIM, LDIM >::operator+=(), madness::LowRankFunction< T, NDIM, LDIM >::operator-=(), madness::F12Potentials::read_cabs_from_file(), madness::PNO::transform_pairs(), madness::PNO::truncate_pairs(), and madness::PNO::update_pno().

APPLY()

complex_functionT madness::APPLY	(	const complex_operatorT *	q1d,
		const complex_functionT &	psi
	)

References apply_1d_realspace_push(), madness::Function< T, NDIM >::broaden(), lo, psi(), madness::Function< T, NDIM >::reconstruct(), and madness::Function< T, NDIM >::sum_down().

Referenced by applyexpLt(), chin_chen(), q_c(), sympgrad4(), sympgrad6(), and trotter().

apply() [1/21]

template<typename T , std::size_t NDIM>

Function<T,NDIM> madness::apply	(	const Derivative< T, NDIM > &	D,
		const Function< T, NDIM > &	f,
		bool	fence = true
	)

Applies derivative operator to function (for syntactic equivalence to integral operator apply)

References f.

apply() [2/21]

template<typename opT , typename R , std::size_t NDIM>

Function<TENSOR_RESULT_TYPE(typename opT::opT,R), NDIM> madness::apply	(	const opT &	op,
		const Function< R, NDIM > &	f,
		bool	fence = true
	)

Apply operator in non-standard form.

Returns a new function with the same distribution

!!! For the moment does NOT respect fence option ... always fences if the operator acts on one particle only the result will be sorted as g.particle=1: g(f) = \int g(x,x') f(x',y) dx' = result(x,y) g.particle=2: g(f) = \int g(y,y') f(x,y') dy' = result(x,y) for the second case it will notably not be as it is implemented in the partial inner product! g.particle=2 g(f) = result(x,y) inner(g(y,y'),f(x,y'),1,1) = result(y,x) also note the confusion with the counting of the particles/integration variables

References apply_only(), madness::Function< T, NDIM >::change_tree_state(), madness::Function< T, NDIM >::clear(), f, madness::WorldGopInterface::fence(), madness::Function< T, NDIM >::get_impl(), madness::World::gop, MADNESS_ASSERT, madness::Function< T, NDIM >::make_nonstandard(), nonstandard_after_apply, op(), madness::Function< T, NDIM >::print_size(), print_timings, R, madness::Function< T, NDIM >::reconstruct(), redundant, madness::Function< T, NDIM >::standard(), TENSOR_RESULT_TYPE(), TT_2D, VERIFY_TREE, madness::Function< T, NDIM >::verify_tree(), and madness::Function< T, NDIM >::world().

apply() [3/21]

template<typename opT , typename T , std::size_t LDIM>

Function<TENSOR_RESULT_TYPE(typename opT::opT,T), LDIM+LDIM> madness::apply	(	const opT &	op,
		const std::vector< Function< T, LDIM >> &	f1,
		const std::vector< Function< T, LDIM >> &	f2,
		bool	fence = true
	)

Apply operator on a hartree product of two low-dimensional functions.

Supposed to be something like result= G( f(1)*f(2)) the hartree product is never constructed explicitly, but its coeffs are constructed on the fly and processed immediately.

Parameters

[in]	op	the operator
[in]	f1	function of particle 1
[in]	f2	function of particle 2
[in]	fence	if we shall fence

Returns

a function of dimension NDIM=LDIM+LDIM

References madness::FunctionFactory< T, NDIM >::empty(), f, f1, f2, madness::WorldGopInterface::fence(), madness::FunctionFactory< T, NDIM >::fence(), madness::Function< T, NDIM >::get_impl(), get_impl(), madness::World::gop, madness::FunctionFactory< T, NDIM >::k(), op(), reconstruct(), standard(), T(), TENSOR_RESULT_TYPE(), and madness::FunctionFactory< T, NDIM >::thresh().

apply() [4/21]

template<typename T , std::size_t NDIM>

CCPairFunction<T,NDIM> madness::apply	(	const ProjectorBase &	projector,
		const CCPairFunction< T, NDIM > &	argument
	)

References apply(), and MADNESS_CHECK.

apply() [5/21]

template<typename T , std::size_t NDIM>

std::vector< CCPairFunction< T, NDIM > > madness::apply	(	const ProjectorBase &	projector,
		const std::vector< CCPairFunction< T, NDIM >> &	argument
	)

apply the projector on the argument function, potentially yielding a vector of CCPairfunctions as result

result can be Q12 f12 |ij> = (1 - O1) (1 - O2) f12 i(1) j(2) = f12 ij - \sum_k k(1) f_ik(2) j(2) - \sum_k k(2) f_ij(1)j(1) which is a pure function and a decomposed function

References madness::CCPairFunction< T, NDIM >::apply().

apply() [6/21]

template<typename T , typename R , std::size_t NDIM, std::size_t KDIM>

std::vector< Function<TENSOR_RESULT_TYPE(T,R), NDIM> > madness::apply	(	const SeparatedConvolution< T, KDIM > &	op,
		const std::vector< Function< R, NDIM > >	f
	)

Applies an operator to a vector of functions — q[i] = apply(op,f[i])

References apply(), f, and op().

apply() [7/21]

template<typename T , std::size_t NDIM>

CCPairFunction< T, NDIM > madness::apply	(	const SeparatedConvolution< T, NDIM > &	G,
		const CCPairFunction< T, NDIM > &	argument
	)

apply the operator on a CCPairfunction, both with the same dimension

note there is another function, where the operator works only on some dimensions of the CCPairFunction!

Returns

result(x) = \int op(x,x') arg(x') dx': a CCPairfunction with the same dimension as the argument

References madness::timer::end(), G, madness::CCPairFunction< T, NDIM >::get_a(), madness::CCPairFunction< T, NDIM >::get_b(), madness::CCPairFunction< T, NDIM >::get_function(), madness::CCPairFunction< T, NDIM >::is_decomposed_no_op(), madness::CCPairFunction< T, NDIM >::is_pure(), MADNESS_ASSERT, MADNESS_EXCEPTION, madness::CCPairFunction< T, NDIM >::name(), and madness::CCPairFunction< T, NDIM >::world().

apply() [8/21]

template<typename T , std::size_t NDIM>

CCPairFunction<T,NDIM> madness::apply	(	const SeparatedConvolution< T, NDIM > &	G,
		const std::vector< CCPairFunction< T, NDIM >> &	argument
	)

References a, and G.

apply() [9/21]

template<typename T , std::size_t NDIM>

std::vector<CCPairFunction<T,NDIM> > madness::apply	(	const SeparatedConvolution< T, NDIM > &	op,
		const std::vector< CCPairFunction< T, NDIM >> &	argument
	)

References a, and G.

apply() [10/21]

template<typename T , std::size_t NDIM>

CCPairFunction< T, NDIM > madness::apply	(	const SeparatedConvolution< T, NDIM/2 > &	op,
		const CCPairFunction< T, NDIM > &	arg
	)

apply the operator to the argument

the operator is applied to one particle only, the other one is left untouched note the ordering of the particles, cf the corresponding comment in mra.h op.particle==1 : op(f(x,y)) = op(x,x') f(x',y) = result(x,y); op.particle==2 : op(f(x,y)) = op(y,y') f(x,y') = result(y,x);

References apply(), arg(), MADNESS_CHECK, MADNESS_CHECK_THROW, op(), and madness::CCPairFunction< T, NDIM >::swap_particles().

apply() [11/21]

template<typename T , std::size_t NDIM>

std::vector< CCPairFunction< T, NDIM > > madness::apply	(	const SeparatedConvolution< T, NDIM/2 > &	op,
		const std::vector< CCPairFunction< T, NDIM >> &	argument
	)

apply the operator to the argument

the operator is applied to one particle only, the other one is left untouched note the ordering of the particles, cf the corresponding comment in mra.h op.particle==1 : op(f(x,y)) = op(x,x') f(x',y) = result(x,y); op.particle==2 : op(f(x,y)) = op(y,y') f(x,y') = result(y,x);

References apply(), arg(), op(), and madness::response_space::push_back().

apply() [12/21]

template<class T , class Q >

TensorTrain<TENSOR_RESULT_TYPE(T,Q)> madness::apply	(	const TensorTrain< T > &	op,
		const TensorTrain< Q > &	t,
		const double	thresh
	)

apply an operator in TT format on a tensor in TT format

Parameters

[in]	op	operator in TT format ..(r_1,k',k,r_2)..
[in]	t	tensor in TT format ..(r_1,k',r_2).. the result tensor will be .. (r_1,k,r_2) = \sum_k' ..(r_1,k',k,r_2).. ..(r_1,k',r_2).. during the apply a rank reduction will be performed 2*ndim allocates are needed

References B, copy(), madness::Tensor< T >::cycledim(), d(), madness::BaseTensor::dim(), madness::BaseTensor::dims(), madness::TensorTrain< T >::get_core(), inner_result(), k, k0, MADNESS_ASSERT, max, maxR, madness::BaseTensor::ndim(), op(), print(), Q(), R, R1, r2(), R2, rank_revealing_decompose(), madness::TensorTrain< T >::ranks(), madness::Tensor< T >::reshape(), T(), TENSOR_RESULT_TYPE(), and thresh.

apply() [13/21]

template<typename T , std::size_t NDIM>

std::vector< Function<T,NDIM> > madness::apply	(	World &	world,
		const Derivative< T, NDIM > &	D,
		const std::vector< Function< T, NDIM > > &	v,
		bool	fence = true
	)

Applies a derivative operator to a vector of functions.

References madness::WorldGopInterface::fence(), madness::World::gop, reconstruct(), and v.

apply() [14/21]

template<typename T , std::size_t NDIM>

std::vector< Function<T,NDIM> > madness::apply	(	World &	world,
		const Derivative< T, NDIM > &	D,
		const std::vector< Function< T, NDIM > > &	v,
		const unsigned int	blk = 1,
		const bool	fence = true
	)

Applies a derivative operator to a vector of functions.

References madness::WorldGopInterface::fence(), madness::World::gop, reconstruct(), and v.

apply() [15/21]

template<typename T , typename R , std::size_t NDIM, std::size_t KDIM>

std::vector< Function<TENSOR_RESULT_TYPE(T,R), NDIM> > madness::apply	(	World &	world,
		const SeparatedConvolution< T, KDIM > &	op,
		const std::vector< Function< R, NDIM > >	f
	)

Applies an operator to a vector of functions — q[i] = apply(op,f[i])

References apply_only(), f, madness::WorldGopInterface::fence(), get_impl(), madness::World::gop, make_nonstandard(), NDIM, op(), print_timings, PROFILE_BLOCK, R, madness::World::rank(), reconstruct(), T(), TENSOR_RESULT_TYPE(), TT_2D, and wall_time().

apply() [16/21]

template<typename T , typename R , std::size_t NDIM>

std::vector< Function<TENSOR_RESULT_TYPE(T,R), NDIM> > madness::apply	(	World &	world,
		const SeparatedConvolution< T, NDIM > &	op,
		const std::vector< Function< R, NDIM > >	f,
		const unsigned int	blk = 1
	)

Applies an operator to a vector of functions — q[i] = apply(op,f[i])

References apply_only(), f, madness::WorldGopInterface::fence(), madness::World::gop, NDIM, nonstandard, op(), PROFILE_BLOCK, R, reconstruct(), standard(), T(), and TENSOR_RESULT_TYPE().

apply() [17/21]

template<typename opT , typename R , std::size_t NDIM>

std::vector< Function<TENSOR_RESULT_TYPE(typename opT::opT,R), NDIM> > madness::apply	(	World &	world,
		const std::vector< std::shared_ptr< opT > > &	op,
		const std::vector< Function< R, NDIM > >	f
	)

Applies a vector of operators to a vector of functions — q[i] = apply(op[i],f[i])

References apply_only(), f, madness::WorldGopInterface::fence(), madness::World::gop, MADNESS_ASSERT, make_nonstandard(), NDIM, nonstandard_after_apply, op(), PROFILE_BLOCK, R, reconstruct(), madness::BaseTensor::size(), standard(), and TENSOR_RESULT_TYPE().

apply() [18/21]

template<typename opT , typename R , std::size_t NDIM>

std::vector< Function<TENSOR_RESULT_TYPE(typename opT::opT,R), NDIM> > madness::apply	(	World &	world,
		const std::vector< std::shared_ptr< opT > > &	op,
		const std::vector< Function< R, NDIM > >	f,
		const unsigned int	blk = 1
	)

Applies a vector of operators to a vector of functions — q[i] = apply(op[i],f[i])

References apply_only(), f, madness::WorldGopInterface::fence(), madness::World::gop, MADNESS_ASSERT, NDIM, nonstandard, op(), PROFILE_BLOCK, R, reconstruct(), madness::BaseTensor::size(), standard(), and TENSOR_RESULT_TYPE().

apply() [19/21]

response_space madness::apply	(	World &	world,
		real_derivative_3d &	op,
		response_space &	f
	)

References apply(), f, MADNESS_ASSERT, op(), and madness::response_space::push_back().

apply() [20/21]

response_space madness::apply	(	World &	world,
		std::vector< std::shared_ptr< real_convolution_3d >> &	op,
		response_space &	f
	)

References apply(), f, madness::WorldGopInterface::fence(), madness::World::gop, MADNESS_ASSERT, op(), madness::BaseTensor::size(), and madness::response_space::x.

apply() [21/21]

response_space madness::apply	(	World &	world,
		std::vector< std::vector< std::shared_ptr< real_convolution_3d >>> &	op,
		response_space &	f
	)

References f, MADNESS_ASSERT, op(), and madness::BaseTensor::size().

Referenced by madness::DFTNuclearChargeDensityOp< T, NDIM >::DFTNuclearChargeDensityOp(), NuclearChargeDensityOp< T, NDIM >::NuclearChargeDensityOp(), madness::Solver< T, NDIM >::Solver(), madness::CCPairFunction< T, NDIM >::apply(), KPeriodicBSHOperator::apply(), Fcwf::apply(), apply(), apply_bsh(), madness::TDHF::apply_G(), madness::Solver< T, NDIM >::apply_hf_exchange(), madness::Solver< T, NDIM >::apply_hf_exchange3(), madness::Solver< T, NDIM >::apply_hf_exchange4(), apply_periodic_bsh(), madness::Diamagnetic_potential_factor::apply_potential(), madness::Solver< T, NDIM >::apply_potential(), apply_potential(), madness::F12Potentials::apply_regularized_potential(), madness::HartreeFock< T, NDIM >::calculate_coulomb_energy(), madness::HartreeFock< T, NDIM >::calculate_exchange_energy(), madness::DFT< T, NDIM >::calculate_tot_coulomb_energy(), madness::DFT< T, NDIM >::calculate_tot_pe_sp(), chin_chen(), madness::Nemo::compute_all_cphf(), madness::PNO::compute_cispd_correction_es(), madness::PNO::compute_cispd_correction_gs(), madness::PNO::compute_cispd_f12_correction_es(), madness::PNO::compute_cispd_f12_correction_gs(), madness::F12Potentials::compute_cispd_f12_energies(), madness::Znemo::compute_energy(), compute_energy(), madness::Nemo::compute_energy_regularized(), compute_energy_simple(), madness::PNO::compute_fluctuation_matrix(), madness::F12Potentials::compute_fQc_integrals_ij(), madness::F12Potentials::compute_fQg_integral(), madness::F12Potentials::compute_fQg_integrals(), madness::F12Potentials::compute_fQU_integrals(), madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::compute_K_tile(), madness::NemoBase::compute_kinetic_energy(), madness::NemoBase::compute_kinetic_energy1a(), madness::NemoBase::compute_kinetic_energy2(), madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::MacroTaskExchangeSimple::compute_offdiagonal_batch_in_symmetric_matrix(), madness::PNO::compute_projected_mp2_energies(), madness::F12Potentials::compute_regularized_fluctuation_matrix(), madness::SCF::compute_residual(), madness::Znemo::compute_residuals(), madness::Zcis::compute_residuals(), madness::OEP::compute_total_kinetic_density(), madness::PNO::compute_V_aj_i(), madness::PNO::compute_Vreg_aj_i_commutator_response(), madness::PNO::compute_Vreg_aj_i_fock_residue(), madness::F12Potentials::compute_xyab_integrals(), converge(), converge2s(), madness::F12Potentials::convolve_with_fg(), madness::F12Potentials::convolve_with_fU(), madness::F12Potentials::convolve_with_gradslater(), madness::F12Potentials::convolve_with_slater_potential(), div(), madness::SCF::do_plots(), doit(), madness::smooth< T, NDIM >::gaussian_smoothing(), grad(), grad_ble_one(), grad_ble_two(), grad_bpsline_two(), grad_bspline_one(), grad_bspline_three(), madness::Solver< T, NDIM >::initial_guess(), madness::SCF::initial_guess(), madness::LRFunctorF12< T, NDIM, LDIM >::inner(), iterate(), madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::K_small_memory(), madness::SCF::kinetic_energy_matrix(), madness::Kinetic< T, NDIM >::kinetic_energy_matrix(), MiniDFT::kinetic_energy_matrix(), madness::Nemo::kinetic_energy_potential(), main(), madness::SCF::make_coulomb_potential(), DF::make_fermi_potential(), make_kinetic_matrix(), madness::Solver< T, NDIM >::make_kinetic_matrix(), madness::Solver< T, NDIM >::make_nuclear_charge_density_impl(), madness::TDHF::make_perturbed_fock_matrix(), Calculation::make_reference(), madness::EigSolver< T, NDIM >::multi_solve(), madness::HartreeFockExchangeOp< T, NDIM >::op_o(), madness::HartreeFockCoulombOp< T, NDIM >::op_r(), madness::Projector< T, NDIM >::operator()(), madness::QProjector< T, NDIM >::operator()(), madness::StrongOrthogonalityProjector< T, NDIM >::operator()(), madness::CCConvolutionOperator< T, NDIM >::operator()(), madness::SeparatedConvolution< Q, NDIM >::operator()(), MicroTask::operator()(), madness::Nuclear< T, NDIM >::operator()(), madness::Lz< T, NDIM >::operator()(), madness::BSHApply< T, NDIM >::operator()(), madness::DNuclear< T, NDIM >::operator()(), MyDerivativeOperator< T, NDIM >::operator()(), madness::DerivativeOperator< T, NDIM >::operator()(), madness::TDHF::oscillator_strength_velocity(), madness::DFTCoulombOp< T, NDIM >::prepare_op(), madness::DFTCoulombPeriodicOp< T, NDIM >::prepare_op(), rot(), madness::Solver< T, NDIM >::solve(), madness::EigSolver< T, NDIM >::solve(), madness::SCF::solve(), madness::Nemo::solve_cphf(), test(), madness::smooth< T, NDIM >::test_1d(), test_he_potential(), test_hf_be(), test_hf_he(), test_inner(), test_nuclear_potential(), test_nuclear_potential3(), test_nuclear_potential_big_unit_cell(), test_op(), test_per(), test_periodic_bsh(), testbsh(), testNavierStokes(), testPeriodicCoulomb3d(), trotter(), madness::SCF::twoint(), MiniDFT::update(), and madness::PNO::update_pno().

apply_1d_realspace_push()

template<typename opT , typename R , std::size_t NDIM>

Function<TENSOR_RESULT_TYPE(typename opT::opT,R), NDIM> madness::apply_1d_realspace_push	(	const opT &	op,
		const Function< R, NDIM > &	f,
		int	axis,
		bool	fence = true
	)

References axis, f, madness::Function< T, NDIM >::get_impl(), NDIM, op(), PROFILE_FUNC, R, madness::Function< T, NDIM >::reconstruct(), redundant_after_merge, TENSOR_RESULT_TYPE(), VERIFY_TREE, and madness::Function< T, NDIM >::verify_tree().

Referenced by APPLY(), APPLY(), madness::SCF::APPLY(), chin_chen(), test_apply_push_1d(), test_qm(), and trotter().

apply_only()

template<typename opT , typename R , std::size_t NDIM>

Function<TENSOR_RESULT_TYPE(typename opT::opT,R), NDIM> madness::apply_only	(	const opT &	op,
		const Function< R, NDIM > &	f,
		bool	fence = true
	)

Apply operator ONLY in non-standard form - required other steps missing !!

References f, NDIM, op(), R, and TENSOR_RESULT_TYPE().

Referenced by apply(), and test_coulomb().

assign_calctype()

CalcType madness::assign_calctype

(

const std::string

name

)

Assigns enum to string.

References CT_ADC2, CT_CC2, CT_CISPD, CT_LRCC2, CT_LRCCS, CT_MP2, CT_TDHF, CT_TEST, MADNESS_EXCEPTION, and name().

assign_name() [1/4]

std::string madness::assign_name

(

const CalcType &

inp

)

Assigns strings to enums for formated output.

References CT_ADC2, CT_CC2, CT_CISPD, CT_LRCC2, CT_LRCCS, CT_MP2, CT_TDHF, CT_TEST, and MADNESS_EXCEPTION.

assign_name() [2/4]

std::string madness::assign_name

(

const CCState &

input

)

Assigns strings to enums for formated output.

References EXCITED_STATE, GROUND_STATE, and MADNESS_EXCEPTION.

Referenced by madness::CCConvolutionOperator< T, NDIM >::clear_intermediates(), madness::CC2::initialize_pairs(), madness::CCIntermediatePotentials::insert(), madness::CC2::iterate_pair(), madness::CC2::iterate_singles(), madness::CCPair::name(), madness::CCIntermediatePotentials::operator()(), madness::CC2::solve(), madness::CC2::update_constant_part_adc2(), and madness::CCConvolutionOperator< T, NDIM >::update_elements().

assign_name() [3/4]

std::string madness::assign_name

(

const FuncType &

inp

)

Assigns strings to enums for formated output.

References HOLE, MADNESS_EXCEPTION, MIXED, PARTICLE, RESPONSE, and UNDEFINED.

assign_name() [4/4]

std::string madness::assign_name

(

const PotentialType &

inp

)

Assigns strings to enums for formated output.

References MADNESS_EXCEPTION, POT_ccs_, POT_cis_, POT_F3D_, POT_s2b_, POT_s2c_, POT_s3a_, POT_s3b_, POT_s3c_, POT_s4a_, POT_s4b_, POT_s4c_, POT_s5a_, POT_s5b_, POT_s5c_, POT_s6_, and POT_singles_.

atomic_number_to_symbol()

std::string madness::atomic_number_to_symbol

(

const unsigned int

atomic_number

)

return the lower-case element symbol corresponding to the atomic number

References atomic_data, and madness::AtomicData::symbol_lowercase.

Referenced by do_vtk_plots(), madness::Nemo::gradient(), madness::BasisFunctions::guess_contracted_virtuals_from_file(), madness::BasisFunctions::guess_virtuals_from_file(), madness::BasisFunctions::guess_virtuals_internal(), madness::SCF::initial_guess(), madness::BasisFunctions::predefined_guess(), DF::print_molecule(), madness::BasisFunctions::read_basis_from_file(), madness::F12Potentials::read_cabs_from_file(), madness::BasisFunctions::read_contracted_basis_from_file(), and write_molecules_to_file().

autoc()

bool madness::autoc	(	int	k,
		Tensor< double > *	c
	)

Return the autocorrelation coefficients for scaling functions of given order.

Returned is a view of the cached data ... do not modify.

The autocorrelation functions are defined as

Phi_ij(z) = int(0,z+1) phi_i(x) phi_j(x-z)  z<=0
Phi_ij(z) = int(z,1) phi_i(x) phi_j(x-z)    z>=0

and are expanded in the double order Legendre scaling functions on either side of the origin

Phi_ij(z) = sum(p) [phi_p(z+1)*cminus_ijp + phi_p(z)*cplus_ijp]
 
cplus_ijp  = int(-1,0) Phi_ij(z) phi_p(z+1)
cminus_ijp = int(0,1)  Phi_ij(z) phi_p(z)

The expansion coefficients cminus and cplus have been precomputed with Maple to a precision of about 1e-30. Only cplus is stored and we use

cplus(i,j,p) = (-1)**(i+j+p) * cminus(i,j,p)
cplus(i,j,p) = (-1)**(i+j)   * cplus(j,i,p)

The returned tensor concatenates cminus and cplus.

Return true on success, false on failure (which also prints error message to stdout).

References _c, _cread, c, k, kcur, and kread.

Referenced by madness::Convolution1D< Q >::Convolution1D().

bandlimited_propagator_plot()

void madness::bandlimited_propagator_plot

(

)

References madness::BandlimitedPropagator::plot().

Referenced by main().

begin_papi_measurement()

void madness::begin_papi_measurement ( )

inline

Referenced by madness::ThreadBase::main().

bgq_mtxmq_padded() [1/4]

void madness::bgq_mtxmq_padded	(	long	dimi,
		long	dimj,
		long	dimk,
		long	extb,
		__complex__ double *	c_x,
		const __complex__ double *	a_x,
		const __complex__ double *	b_x
	)

References a, b, c, k, and posix_memalign().

bgq_mtxmq_padded() [2/4]

void madness::bgq_mtxmq_padded	(	long	dimi,
		long	dimj,
		long	dimk,
		long	extb,
		__complex__ double *	c_x,
		const __complex__ double *	a_x,
		const double *	b_x
	)

References a, b, c, k, posix_memalign(), and xc.

bgq_mtxmq_padded() [3/4]

void madness::bgq_mtxmq_padded	(	long	dimi,
		long	dimj,
		long	dimk,
		long	extb,
		__complex__ double *	c_x,
		const double *	a_x,
		const __complex__ double *	b_x
	)

References a, b, c, k, and posix_memalign().

bgq_mtxmq_padded() [4/4]

void madness::bgq_mtxmq_padded	(	long	dimi,
		long	dimj,
		long	dimk,
		long	extb,
		double *	c_x,
		const double *	a_x,
		const double *	b_x
	)

References a, b, c, k, and posix_memalign().

binary_op()

template<typename L , typename R , typename opT , std::size_t NDIM>

Function<TENSOR_RESULT_TYPE(L,R),NDIM> madness::binary_op	(	const Function< L, NDIM > &	left,
		const Function< R, NDIM > &	right,
		const opT &	op,
		bool	fence = true
	)

Generate new function = op(left,right) where op acts on the function values.

References madness::Function< T, NDIM >::get_impl(), madness::Function< T, NDIM >::is_reconstructed(), L, NDIM, op(), PROFILE_FUNC, R, madness::Function< T, NDIM >::reconstruct(), and TENSOR_RESULT_TYPE().

Referenced by madness::Nemo::kinetic_energy_potential(), main(), SurfaceMoleculeInteraction::make_surfcharge(), and test_xc2().

BSHOperator()

template<std::size_t NDIM>

static SeparatedConvolution<double,NDIM> madness::BSHOperator ( World &  world, double  mu, double  lo, double  eps, const BoundaryConditions< NDIM > &  bc = FunctionDefaults<NDIM>::get_bc(), int  k = FunctionDefaults<NDIM>::get_k()  )

inlinestatic

Factory function generating separated kernel for convolution with BSH kernel in general NDIM.

References k, lo, MADNESS_EXCEPTION, mu, OT_BSH, print(), and madness::World::rank().

BSHOperator3D()

static SeparatedConvolution<double,3> madness::BSHOperator3D ( World &  world, double  mu, double  lo, double  eps, const BoundaryConditions< 3 > &  bc = FunctionDefaults<3>::get_bc(), int  k = FunctionDefaults<3>::get_k()  )

inlinestatic

Factory function generating separated kernel for convolution with exp(-mu*r)/(4*pi*r) in 3D.

References k, lo, mu, and OT_BSH.

Referenced by apply_BSH_new(), converge(), converge2s(), doit(), iterate(), iterate_excite(), iterate_ground(), iterate_xy(), main(), make_bsh_operator(), test_modified(), and test_periodic_bsh().

BSHOperatorPtr()

template<std::size_t NDIM>

static SeparatedConvolution<double,NDIM>* madness::BSHOperatorPtr ( World &  world, double  mu, double  lo, double  eps, const BoundaryConditions< NDIM > &  bc = FunctionDefaults<NDIM>::get_bc(), int  k = FunctionDefaults<NDIM>::get_k()  )

inlinestatic

Factory function generating separated kernel for convolution with BSH kernel in general NDIM.

References k, lo, MADNESS_EXCEPTION, mu, OT_BSH, print(), and madness::World::rank().

BSHOperatorPtr3D()

static SeparatedConvolution<double,3>* madness::BSHOperatorPtr3D ( World &  world, double  mu, double  lo, double  eps, const BoundaryConditions< 3 > &  bc = FunctionDefaults<3>::get_bc(), int  k = FunctionDefaults<3>::get_k()  )

inlinestatic

Factory function generating separated kernel for convolution with exp(-mu*r)/(4*pi*r) in 3D.

References BC_PERIODIC, madness::GFit< T, NDIM >::BSHFit(), fit(), madness::FunctionDefaults< NDIM >::get_cell_width(), k, lo, madness::Tensor< T >::max(), mu, and madness::Tensor< T >::normf().

Referenced by madness::F12Potentials::F12Potentials(), apply_BSH(), madness::TDHF::apply_G(), madness::Znemo::compute_residuals(), madness::Zcis::compute_residuals(), madness::CC2::iterate_singles(), madness::Solver< T, NDIM >::make_bsh_operators(), MiniDFT::make_bsh_operators(), make_bsh_operators(), madness::PNO::make_bsh_operators(), and madness::SCF::make_bsh_operators().

c_rks_vwn5__()

int madness::c_rks_vwn5__	(	const double *	r__,
		double *	f,
		double *	dfdra
	)

References a2, c_b7, f, and pow().

Referenced by da_ldaop(), madness::XCfunctional::exc(), madness::xc_lda_potential::operator()(), test_xc1(), and madness::XCfunctional::vxc().

c_uks_vwn5__()

int madness::c_uks_vwn5__	(	double *	ra,
		double *	rb,
		double *	f,
		double *	dfdra,
		double *	dfdrb
	)

References a1, a2, c_b14, c_b7, f, f1, f2, f3, pow(), ss1, v, and zeta.

Referenced by madness::XCfunctional::exc(), and madness::XCfunctional::vxc().

CCConvolutionOperatorPtr()

template<typename T , std::size_t NDIM>

std::shared_ptr<CCConvolutionOperator<T,NDIM> > madness::CCConvolutionOperatorPtr	(	World &	world,
		const OpType	type,
		typename CCConvolutionOperator< T, NDIM >::Parameters	param
	)

References param, and type().

change_tensor_type()

template<typename T >

void madness::change_tensor_type	(	GenTensor< T > &	t,
		const TensorArgs &	targs
	)

change representation to targ.tt

References MADNESS_ASSERT, madness::TensorArgs::tt, and TT_FULL.

Referenced by madness::FunctionImpl< T, NDIM >::add_scalar_inplace(), madness::FunctionImpl< T, NDIM >::do_change_tensor_type::operator()(), madness::FunctionImpl< T, NDIM >::do_unary_op_value_inplace< opT >::operator()(), and madness::FunctionImpl< T, NDIM >::unary_op_coeff_inplace().

change_tree_state()

template<typename T , std::size_t NDIM>

const std::vector<Function<T,NDIM> >& madness::change_tree_state	(	const std::vector< Function< T, NDIM >> &	v,
		const TreeState	finalstate,
		const bool	fence = true
	)

change tree state of the functions

will respect fence

Returns

v for chaining

References compressed, f, madness::WorldGopInterface::fence(), madness::World::gop, madness::Function< T, NDIM >::is_initialized(), nonstandard, nonstandard_with_leaves, reconstructed, redundant, v, and madness::Function< T, NDIM >::world().

Referenced by madness::projector_irrep::apply_symmetry_operators(), compress(), madness::StrongOrthogonalityProjector< T, NDIM >::get_vectors_for_outer_product(), hartree_product(), inner(), innerXX(), make_nonstandard(), madness::CompositeFunctorInterface< T, NDIM, MDIM >::make_redundant(), make_redundant(), reconstruct(), standard(), test_conversion(), test_transform(), and transform_reconstructed().

check_for_inf() [1/2]

template<typename T >

static std::enable_if<std::is_floating_point<T>::value, void>::type madness::check_for_inf ( const std::string &  str, T &  arg  )

static

References arg().

Referenced by operator>>().

check_for_inf() [2/2]

template<typename T >

static std::enable_if<!std::is_floating_point<T>::value, void>::type madness::check_for_inf ( const std::string &  str, T &  arg  )

static

check_if_pseudo_atom()

bool madness::check_if_pseudo_atom

(

const std::string &

symbol

)

Referenced by madness::Molecule::read(), and madness::Molecule::read_xyz().

check_linear_dependence()

template<typename C >

void madness::check_linear_dependence	(	const Tensor< C > &	Q,
		Tensor< C > &	c,
		const double	rcondtol,
		const double	cabsmax,
		bool	do_print = true
	)

check for subspace linear dependency

Parameters

[in]	Q	the input matrix for KAIN
[in,out]	c	the coefficients for constructing the new solution
[in]	rcondtol	rcond less than this will cause the subspace to be shrunk due to linear dependence
[in]	cabsmax	maximum element of c greater than this will cause the subspace to be shrunk due to linear dependence

References c, e(), KAIN(), m, print(), and Q().

Referenced by madness::NonlinearSolverND< NDIM >::update(), and madness::XNonlinearSolver< T, C, Alloc >::update().

checksum_file()

unsigned long madness::checksum_file

(

const char *

filename

)

Simple checksum for ASCII characters in file.

References c, filename, and sum().

Referenced by read_twoscale(), and test_autoc().

cholesky() [1/8]

template<>

void madness::cholesky	(	char	uplo,
		integer	n,
		complex_real4 *	A,
		integer	lda
	)

References cpotrf_(), LINALG_ASSERT, and madness::cblas::to_cptr().

cholesky() [2/8]

template<>

void madness::cholesky	(	char	uplo,
		integer	n,
		complex_real8 *	A,
		integer	lda
	)

References LINALG_ASSERT, madness::cblas::to_zptr(), and zpotrf_().

cholesky() [3/8]

template<>

void madness::cholesky	(	char	uplo,
		integer	n,
		real4 *	A,
		integer	lda
	)

References LINALG_ASSERT, and spotrf_().

cholesky() [4/8]

template<>

void madness::cholesky	(	char	uplo,
		integer	n,
		real8 *	A,
		integer	lda
	)

References dpotrf_(), and LINALG_ASSERT.

cholesky() [5/8]

template<typename T >

void madness::cholesky	(	char	uplo,
		integer	n,
		T *	A,
		integer	lda
	)

Compute the Cholesky Factorization via LAPACK.

cholesky() [6/8]

template void madness::cholesky

(

Tensor< double > &

A

)

cholesky() [7/8]

template void madness::cholesky

(

Tensor< double_complex > &

A

)

cholesky() [8/8]

template<typename T >

void madness::cholesky

(

Tensor< T > &

A

)

Compute the Cholesky factorization.

Solves symmetric or Hermitian generalized eigenvalue problem.

Compute the Cholesky factorization of the symmetric positive definite matrix A

For memory efficiency A is modified inplace. Its upper triangle will hold the result and the lower trianlge will be zeroed such that input = inner(transpose(output),output).

Cholesky factorization

References A(), mask_info(), potrf_(), and TENSOR_ASSERT.

Referenced by orthonormalize_cd(), and test_cholesky().

column_distributed_matrix()

template<typename T >

DistributedMatrix<T> madness::column_distributed_matrix	(	World &	world,
		int64_t	n,
		int64_t	m,
		int64_t	coltile = 0
	)

Generates an (n,m) matrix distributed by columns (row dimension is not distributed)

Quietly forces an even column tile size for ease of use in the systolic matrix algorithms

Parameters

[in]	world	The world
[in]	n	The column (first) dimension
[in]	m	The row (second) dimension
[in]	coltile	Tile size for columns forced to be even (default is to use all processes)

Returns

A new zero matrix with the requested dimensions and distribution

References column_distributed_matrix_distribution(), and m.

column_distributed_matrix_distribution()

static DistributedMatrixDistribution madness::column_distributed_matrix_distribution ( World &  world, int64_t  n, int64_t  m, int64_t  coltile  )

inlinestatic

Generates distribution for an (n,m) matrix distributed by columns (row dimension is not distributed)

Quietly forces an even column tile size for ease of use in the systolic matrix algorithms

Parameters

[in]	world	The world
[in]	n	The column (first) dimension
[in]	m	The row (second) dimension
[in]	coltile	Tile size for columns forced to be even (default is to use all processes)

Returns

An object encoding the dimension and distribution information

Referenced by column_distributed_matrix().

compress() [1/3]

template<typename T , std::size_t NDIM>

const std::vector< Function<T,NDIM> >& madness::compress

(

const std::vector< Function< T, NDIM > > &

v

)

compress a vector of functions

implies fence return v for chaining

References change_tree_state(), compressed, and v.

compress() [2/3]

template<typename T , std::size_t NDIM>

void madness::compress	(	World &	world,
		const std::vector< Function< T, NDIM > > &	v,
		bool	fence = true
	)

Compress a vector of functions.

References change_tree_state(), compressed, PROFILE_BLOCK, and v.

Referenced by add(), madness::GTHPseudopotential< Q >::apply_potential(), madness::FunctionImpl< T, NDIM >::change_tree_state(), madness::NemoBase::compute_gradient(), madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::compute_K_tile(), madness::Solver< T, NDIM >::compute_rho(), cross(), madness::FunctionImpl< R, NDIM >::do_print_grid(), DF::exchange(), gaxpy(), gaxpy_oop(), madness::Solver< T, NDIM >::initial_guess(), madness::SCF::initial_guess(), inner(), kinetic_energy_matrix(), madness::SCF::kinetic_energy_matrix(), madness::Kinetic< T, NDIM >::kinetic_energy_matrix(), madness::Nemo::make_density(), madness::SCF::make_density(), MiniDFT::make_density(), madness::FunctionImpl< T, NDIM >::make_redundant(), Calculation::make_reference(), matrix_inner(), matrix_inner_old(), molresponseExchange(), MiniDFT::orthogonalize(), orthogonalize(), madness::projector_irrep::project_on_irreps(), q_c(), madness::MacroTask< taskT >::MacroTaskInternal::run(), sub(), sum(), test2(), test_cross(), test_inner(), test_math(), test_rot(), madness::TDHF::transform(), transform(), madness::Zcis::transform(), madness::PNO::transform_pairs(), truncate(), madness::PNO::truncate_pairs(), madness::SubspaceK< T, NDIM >::update_subspace(), madness::Subspace< T, NDIM >::update_subspace(), madness::SCF::update_subspace(), and Subspace::update_subspace().

compress() [3/3]

template<typename T , std::size_t NDIM>

void madness::compress	(	World &	world,
		const std::vector< Function< T, NDIM > > &	v,
		unsigned int	blk = 1,
		bool	fence = true
	)

Compress a vector of functions.

References madness::WorldGopInterface::fence(), madness::World::gop, PROFILE_BLOCK, and v.

concatenate_columns()

template<typename T >

DistributedMatrix<T> madness::concatenate_columns	(	const DistributedMatrix< T > &	a,
		const DistributedMatrix< T > &	b
	)

Generates a row-distributed matrix with rows of a and b contatenated.

I.e., c[i,j] = a[i,j] if i<ma or b[i-ma,j] if i>=ma

The matrices a and b must have the same row size (i.e., the same number of columns) and be row distributed with the same row tilesze. The result is also row distributed with the same row tilesize as the input matrices.

Parameters

[in]	a	The first matrix
[in]	b	The second matrix

Returns

The result matrix

References _(), ___, a, b, c, and MADNESS_CHECK.

concatenate_rows() [1/2]

template<typename T >

DistributedMatrix<T> madness::concatenate_rows	(	const DistributedMatrix< T > &	a,
		const DistributedMatrix< T > &	b
	)

Generates a column-distributed matrix with rows of a and b contatenated.

I.e., c[i,j] = a[i,j] if j<na or b[i,j-na] if j>=na

The matrices a and b must have the same column size (i.e., the same number of rows) and be column distributed with the same column tilesze. The result is also column distributed with the same column tilesize as the input matrices.

Parameters

[in]	a	The first matrix
[in]	b	The second matrix

Returns

The result matrix

Referenced by distributed_localize_PM().

concatenate_rows() [2/2]

template<typename T >

DistributedMatrix<T> madness::concatenate_rows	(	const DistributedMatrix< T > &	a,
		const DistributedMatrix< T > &	b,
		const DistributedMatrix< T > &	c,
		const DistributedMatrix< T > &	d
	)

Generates a column-distributed matrix with rows of a, b, c, and d contatenated in order.

I.e., c[i,j] = a[i,j] if j in [0,na), b[i,j-na] if j in [na,na+nb), c[i,j-na-nb] if j in [na+nb,na+nb+nc), etc. The matrices must have the same column size (i.e., the same number of rows) and be column distributed with the same column tilesze. The result is also column distributed with the same column tilesize as the input matrices.

Parameters

[in]	a	The first matrix
[in]	b	The second matrix
[in]	c	The third matrix
[in]	d	The fourth matrix

Returns

The result matrix

References _(), ___, a, b, c, d(), madness::DistributedMatrix< T >::data(), and MADNESS_CHECK.

conditional_conj()

template<typename Q >

Q madness::conditional_conj

(

const Q &

coeff

)

For real types return value, for complex return conjugate.

References op().

Referenced by madness::Tensor< T >::conj(), conj(), madness::Tensor< T >::TENSOR_RESULT_TYPE(), and madness::Localizer::undo_reordering().

conj() [1/4]

template<typename T , std::size_t NDIM>

Function<T,NDIM> madness::conj	(	const Function< T, NDIM > &	f,
		bool	fence = true
	)

Return the complex conjugate of the input function with the same distribution and optional fence.

!!! The fence is actually not optional in the current implementation !!!

References madness::Function< T, NDIM >::conj(), copy(), f, and PROFILE_FUNC.

Referenced by madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::ExchangeImpl(), madness::Solver< T, NDIM >::apply_hf_exchange(), madness::Solver< T, NDIM >::apply_hf_exchange4(), madness::RandomizedMatrixDecomposition< T >::check_range(), madness::Znemo::compute_current_density(), madness::Znemo::compute_potentials(), madness::Zcis::compute_potentials(), madness::SVDTensor< T >::compute_svd_from_range(), madness::FunctionImpl< T, NDIM >::conj(), conj_transpose(), DF::diagonalize(), madness::RandomizedMatrixDecomposition< T >::do_compute_range(), DF::exchange(), madness::Znemo::hcore_guess(), inner(), madness::VectorSpace< T, NDIM >::inner(), inner_func(), madness::Zcis::iterate(), kinetic_energy_matrix_slow(), Fcwf::KramersPair(), madness::Zcis::make_guess(), matrix_inner_old(), moments(), madness::conditional_conj_struct< Q, true >::op(), madness::conj_op< Q, NDIM >::operator()(), orthonormalize_fock(), madness::SVDTensor< T >::recompute_from_range(), madness::SRConf< T >::reconstruct(), su_complex(), test_exchange(), test_exchange(), and madness::Localizer::undo_reordering().

conj() [2/4]

double madness::conj ( double  x )

inline

conj() [3/4]

double madness::conj ( float  x )

inline

conj() [4/4]

template<typename T , std::size_t NDIM>

std::vector< Function<T,NDIM> > madness::conj	(	World &	world,
		const std::vector< Function< T, NDIM > > &	v,
		bool	fence = true
	)

Returns the complex conjugate of the vector of functions.

References copy(), madness::WorldGopInterface::fence(), madness::World::gop, PROFILE_BLOCK, and v.

convert() [1/3]

template<typename T , typename Q , std::size_t NDIM>

Function<Q,NDIM> madness::convert	(	const Function< T, NDIM > &	f,
		bool	fence = true
	)

Type conversion implies a deep copy. No communication except for optional fence.

Works in either basis but any loss of precision may result in different errors in applied in a different basis.

The new function is formed with the options from the default constructor.

There is no automatic type conversion since this is generally a rather dangerous thing and because there would be no way to make the fence optional.

References f, madness::Function< T, NDIM >::get_impl(), PROFILE_FUNC, and madness::Function< T, NDIM >::set_impl().

convert() [2/3]

template<class Q , class T >

GenTensor<Q> madness::convert

(

const GenTensor< T > &

other

)

type conversion implies a deep copy

Returns

Returns a new tensor that is a deep copy of the input

References copy(), madness::GenTensor< T >::get_tensor(), madness::GenTensor< T >::is_full_tensor(), madness::GenTensor< T >::is_svd_tensor(), madness::GenTensor< T >::is_tensortrain(), and MADNESS_EXCEPTION.

convert() [3/3]

template<typename T , typename R , std::size_t NDIM>

std::vector< Function<R,NDIM> > madness::convert	(	World &	world,
		const std::vector< Function< T, NDIM > > &	v,
		bool	fence = true
	)

Returns a deep copy of a vector of functions.

References madness::WorldGopInterface::fence(), madness::World::gop, PROFILE_BLOCK, and v.

copy() [1/7]

template<typename T >

DistributedMatrix<T> madness::copy

(

const DistributedMatrix< T > &

A

)

Deep copy of content.

Parameters

[in]

A

The matrix to be copied

Returns

A new matrix with identical dimensions, distribution and content (deep copy)

copy() [2/7]

template<typename T , std::size_t NDIM>

Function<T,NDIM> madness::copy	(	const Function< T, NDIM > &	f,
		bool	fence = true
	)

Create a new copy of the function with the same distribution and optional fence.

References copy(), f, and PROFILE_FUNC.

copy() [3/7]

template<typename T , std::size_t NDIM>

Function<T,NDIM> madness::copy	(	const Function< T, NDIM > &	f,
		const std::shared_ptr< WorldDCPmapInterface< Key< NDIM > > > &	pmap,
		bool	fence = true
	)

Create a new copy of the function with different distribution and optional fence.

Works in either basis. Different distributions imply asynchronous communication and the optional fence is collective.

References f, madness::Function< T, NDIM >::get_impl(), PROFILE_FUNC, madness::Function< T, NDIM >::set_impl(), VERIFY_TREE, and madness::Function< T, NDIM >::verify_tree().

Referenced by madness::ConvolutionData1D< Q >::ConvolutionData1D(), madness::DFTNuclearPotentialOp< T, NDIM >::DFTNuclearPotentialOp(), Fcwf::Fcwf(), madness::Solver< T, NDIM >::Solver(), madness::FunctionCommonData< T, NDIM >::_init_twoscale(), abs(), abs_square(), madness::FunctionNode< T, NDIM >::accumulate(), RealFuncIdentOp::action(), ComplexFuncIdentOp::action(), madness::BSHApply< T, NDIM >::add_coupling_and_levelshift(), madness::SeparatedConvolution< Q, NDIM >::apply(), apply(), apply(), madness::SeparatedConvolution< Q, NDIM >::apply2(), madness::SeparatedConvolution< Q, NDIM >::apply2_lowdim(), madness::TDHF::apply_excitation_operators(), madness::Solver< T, NDIM >::apply_potential(), madness::SCF::apply_potential(), madness::projector_irrep::apply_symmetry_operators(), apply_U_mix(), apply_U_ncf(), apply_V(), applyexpLt(), madness::FunctionImpl< T, NDIM >::binaryXXa(), madness::DFT< T, NDIM >::calculate_tot_pe_sp(), madness::DFT< T, NDIM >::calculate_tot_xc_energy(), madness::Localizer::check_core_valence_separation(), madness::TwoBodyFunctionPureComponent< T, NDIM >::clone(), madness::TwoBodyFunctionSeparatedComponent< T, NDIM >::clone(), madness::CCPairFunction< T, NDIM >::collect_same_types(), madness::Localizer::compute_core_valence_separation_transformation_matrix(), compute_energy(), madness::FunctionImpl< T, NDIM >::Vphi_op_NS< opT, LDIM >::compute_error_from_inaccurate_refinement(), madness::MP2::compute_gQf_cc2interface(), madness::CC2::compute_local_coupling(), madness::OEP::compute_ocep_correction(), madness::OEP::compute_Pauli_kinetic_density(), madness::Zcis::compute_potentials(), compute_R2f2_psi(), madness::MolecularOptimizer::compute_reduced_mass(), compute_reduced_mass(), madness::Zcis::compute_residuals(), madness::SVDTensor< T >::compute_svd(), madness::SVDTensor< T >::compute_svd_from_range(), madness::OEP::compute_total_kinetic_density(), conj(), madness::FunctionImpl< T, NDIM >::Vphi_op_NS< opT, LDIM >::continue_recursion(), convert(), madness::X_space::copy(), copy(), copy(), madness::SCF::copy_data(), cplxfunc0(), cplxfunc2(), madness::CCPairFunction< T, NDIM >::dec_to_pure(), madness::TensorTrain< T >::decompose(), diag_and_transform(), madness::FunctionImpl< T, NDIM >::dirac_convolution_op(), distributed_localize_PM(), dnuclear_anchor_test(), madness::Derivative< T, NDIM >::do_diff2b(), madness::SCF::do_plots(), madness::Solver< T, NDIM >::do_rhs(), madness::Solver< T, NDIM >::do_rhs_simple(), MiniDFT::doit(), doit(), eigenvector_test(), madness::CC2::enforce_core_valence_separation(), fixphases(), madness::FunctionImpl< T, NDIM >::gaxpy_ext_node(), madness::FunctionImpl< T, NDIM >::gaxpy_ext_recursive(), geev(), gelss(), general_transform(), gesv(), data< T, NDIM >::get_ccpairfunctions(), madness::HartreeFock< T, NDIM >::get_coulomb_potential(), madness::MP2::get_fock_matrix(), madness::Convolution1D< Q >::get_rnlp(), madness::MolecularOrbitals< T, NDIM >::get_subset(), ggev(), GMRES(), ground_exchange(), madness::BasisFunctions::guess_with_exop(), madness::SCF::initial_guess(), inner(), madness::LRFunctorF12< T, NDIM, LDIM >::inner(), madness::FunctionImpl< T, NDIM >::inner_adaptive_recursive(), madness::FunctionImpl< T, NDIM >::inner_ext_recursive(), inner_func(), madness::CCPairFunction< T, NDIM >::inner_internal(), inverse(), madness::MP2::iterate(), madness::OEP::iterate(), iterate(), madness::CC2::iterate_pair(), madness::CC2::iterate_singles(), madness::MolecularOrbitals< T, NDIM >::load_mos(), madness::SCF::load_mos(), loadbal(), madness::Localizer::localize_boys(), madness::Localizer::localize_new(), main(), Ansatz0::make_bra(), madness::Nemo::make_ddensity(), madness::smooth< T, NDIM >::make_explog(), madness::SCF::make_fock_matrix(), madness::Zcis::make_guess(), madness::Nemo::make_laplacian_density(), madness::SCF::make_lda_potential(), MiniDFT::make_lda_potential(), make_lda_potential(), madness::Solver< T, NDIM >::make_lda_potential(), madness::TDHF::make_mo_ket(), madness::Solver< T, NDIM >::make_nuclear_potential_impl(), make_potential(), madness::FunctionImpl< T, NDIM >::make_redundant_op(), madness::FunctionImpl< T, NDIM >::Vphi_op_NS< opT, LDIM >::make_sum_coeffs(), SurfaceMoleculeInteraction::make_surfcharge(), madness::MP2::make_Uphi0(), madness::CCPairFunction< T, NDIM >::make_xy_u(), madness::TwoElectronInterface< T, NDIM >::map_coeff(), map_tensor(), madness::Convolution1D< Q >::mod_nonstandard(), madness::FunctionImpl< T, NDIM >::mul(), madness::FunctionImpl< T, NDIM >::multiply(), multiply_by_V(), madness::FunctionImpl< T, NDIM >::mulXXa(), madness::FunctionImpl< T, NDIM >::mulXXveca(), madness::smooth< T, NDIM >::munge_density(), madness::Znemo::normalize(), nuclear_anchor_test(), madness::CCPairFunction< T, NDIM >::op_dec_to_pure(), madness::XCFunctionalLDA< T, NDIM >::op_r(), madness::CCConvolutionOperator< T, NDIM >::operator()(), madness::StrongOrthogonalityProjector< T, NDIM >::operator()(), madness::pg_operator::operator()(), madness::divide_add_interpolate::operator()(), madness::XCOperator< T, NDIM >::logme::operator()(), madness::XCOperator< T, NDIM >::expme::operator()(), madness::FunctionImpl< T, NDIM >::recursive_apply_op< opT, LDIM >::operator()(), madness::FunctionImpl< T, NDIM >::project_out_op< LDIM >::operator()(), test_multiop< T, NDIM >::operator()(), myunaryop_square< T, NDIM >::operator()(), madness::BinaryOpStructure< NDIM >::operator()(), madness::FunctionImpl< T, NDIM >::pointwise_multiplier< LDIM >::operator()(), madness::FunctionImpl< T, NDIM >::add_op::operator()(), Metric::operator()(), madness::BSHApply< T, NDIM >::operator()(), madness::FunctionImpl< T, NDIM >::do_truncate_NS_leafs::operator()(), madness::FunctionImpl< T, NDIM >::do_keep_sum_coeffs::operator()(), madness::FunctionImpl< T, NDIM >::do_check_symmetry_local::operator()(), madness::FunctionImpl< T, NDIM >::do_mapdim::operator()(), madness::FunctionImpl< T, NDIM >::do_map_and_mirror::operator()(), BoysLocalization::operator()(), operator*(), operator*(), madness::DistributedMatrix< T >::operator+(), Fcwf::operator+(), Spinor::operator+(), Fcwf::operator+=(), Fcwf::operator-(), Spinor::operator-(), operator-(), Fcwf::operator-=(), F::operator=(), madness::FunctionNode< T, NDIM >::operator=(), orth(), ortho5(), madness::Znemo::orthonormalize(), orthonormalize(), outer(), madness::FunctionImpl< T, NDIM >::partial_inner_contract(), plot_cubefile(), print_tree_jsonfile(), madness::projector_irrep::project_on_irreps(), madness::FunctionImpl< T, NDIM >::project_refine_op(), propagate(), madness::Nemo::purify_hessian(), rank_revealing_decompose(), Plotter::read(), madness::InitParameters::read(), real(), realfunc0(), realfunc2(), madness::FunctionDefaults< NDIM >::recompute_cell_info(), madness::SVDTensor< T >::recompute_from_range(), madness::FunctionNode< T, NDIM >::recompute_snorm_and_dnorm(), madness::FunctionImpl< T, NDIM >::reconstruct_op(), reconstruct_psi(), madness::FunctionImpl< T, NDIM >::recur_down_for_contraction_map(), reduce(), madness::FunctionImpl< T, NDIM >::refine_op(), madness::FunctionImpl< T, NDIM >::refine_to_common_level(), residual(), madness::OEP::selftest(), madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::set_bra_and_ket(), madness::FunctionDefaults< NDIM >::set_cell(), madness::AtomicBasis::set_guess_info(), madness::MolecularOptimizer::set_hessian(), madness::QuasiNewton::set_hessian(), madness::Localizer::set_metric(), madness::LocalPotentialOperator< T, NDIM >::set_potential(), madness::apply_kernel_helper::slater_apply(), madness::smooth< T, NDIM >::smooth_density(), madness::CC2::solve(), madness::Nemo::solve(), madness::OEP::solve(), solve(), madness::Nemo::solve_cphf(), madness::CC2::solve_lrcc2(), madness::CC2::solve_mp2_coupled(), madness::Zcis::split(), square(), madness::archive::ArchiveStoreImpl< Archive, GenTensor< T > >::store(), madness::archive::ArchiveStoreImpl< Archive, Tensor< T > >::store(), madness::FunctionImpl< T, NDIM >::sum_down_spawn(), svd(), test2(), Test5(), Test7(), test_adaptive_tree(), test_add(), test_addition(), test_asymmetric(), test_bsh(), test_chin_chen(), test_cholesky(), test_compress(), test_constructor(), test_conversion(), test_convolution(), test_coulomb(), test_hermiticity(), test_Kcommutator(), test_multiply(), test_partial_inner_3d(), test_projector(), test_qr(), test_recursive_application(), test_rr_cholesky(), test_scalar_multiplication(), test_slater_exchange(), test_sliced_addition(), test_swap_particles(), test_tight_diffuse(), test_transformations(), test_trotter(), test_truncation(), test_U_el(), test_unaryop(), test_vector_composite(), test_xc2(), madness::FunctionImpl< T, NDIM >::tnorm(), to_response_vector(), transform(), transform_dir(), transpose(), trotter(), madness::TensorTrain< T >::truncate(), two_scale_coefficients(), madness::Localizer::undo_reordering(), madness::Localizer::undo_rotation(), madness::NonlinearSolverND< NDIM >::update(), madness::XNonlinearSolver< T, C, Alloc >::update(), madness::MolecularOrbitals< T, NDIM >::update_mos_and_eps(), CoreFittingTarget::value(), madness::FunctionImpl< T, NDIM >::vtransform(), and madness::MolecularOrbitals< T, NDIM >::write_to().

copy() [4/7]

template<typename T , std::size_t NDIM>

std::vector< Function<T,NDIM> > madness::copy	(	const std::vector< Function< T, NDIM > > &	v,
		bool	fence = true
	)

Returns a deep copy of a vector of functions.

References copy(), PROFILE_BLOCK, and v.

copy() [5/7]

template<typename T , std::size_t NDIM>

std::vector< Function<T,NDIM> > madness::copy	(	World &	world,
		const Function< T, NDIM > &	v,
		const unsigned int	n,
		bool	fence = true
	)

Returns a vector of n deep copies of a function.

Returns a vector of deep copies of of a function.

References copy(), madness::WorldGopInterface::fence(), madness::World::gop, PROFILE_BLOCK, and v.

copy() [6/7]

template<typename T , std::size_t NDIM>

std::vector< Function<T,NDIM> > madness::copy	(	World &	world,
		const std::vector< Function< T, NDIM > > &	v,
		bool	fence = true
	)

Returns a deep copy of a vector of functions.

References copy(), madness::WorldGopInterface::fence(), madness::World::gop, PROFILE_BLOCK, and v.

copy() [7/7]

template<typename T , std::size_t NDIM>

std::vector<Function<T, NDIM> > madness::copy	(	World &	world,
		const std::vector< Function< T, NDIM >> &	v,
		const std::shared_ptr< WorldDCPmapInterface< Key< NDIM >>> &	pmap,
		bool	fence = true
	)

Returns a deep copy of a vector of functions.

Create a new copy of the function with different distribution and optional fence Works in either basis. Different distributions imply asynchronous communication and the optional fence is collective.

References copy(), madness::WorldGopInterface::fence(), madness::World::gop, PROFILE_BLOCK, and v.

copy_2d_patch()

template<typename T >

static void madness::copy_2d_patch ( T *MADNESS_RESTRICT  out, long  ldout, const T *MADNESS_RESTRICT  in, long  ldin, long  n, long  m  )

static

References m.

Referenced by madness::Convolution1D< Q >::nonstandard().

copy_am_arg()

AmArg* madness::copy_am_arg ( const AmArg &  arg )

inline

References alloc_am_arg(), and arg().

Referenced by madness::WorldGopInterface::bcast_task(), and madness::WorldGopInterface::group_bcast_task().

CoulombOperator()

static SeparatedConvolution<double,3> madness::CoulombOperator ( World &  world, double  lo, double  eps, const BoundaryConditions< 3 > &  bc = FunctionDefaults<3>::get_bc(), int  k = FunctionDefaults<3>::get_k()  )

inlinestatic

Factory function generating separated kernel for convolution with 1/r in 3D.

References k, lo, and OT_G12.

Referenced by madness::MP2::compute_gQf(), GygiPot::ESP(), GygiPot::GuessPotential(), iterate(), iterate_excite(), iterate_xy(), main(), MiniDFT::make_coulomb_potential(), make_coulomb_potential(), MicroTask::operator()(), SurfaceMoleculeInteraction::perturbed_molecular_pot(), DF::solve_occupied(), test(), test_coulomb(), test_exchange(), test_Kcommutator(), test_nuclear_potential(), test_nuclear_potential3(), test_nuclear_potential_big_unit_cell(), test_periodic2(), and testNavierStokes().

CoulombOperatorPtr()

static SeparatedConvolution<double,3>* madness::CoulombOperatorPtr ( World &  world, double  lo, double  eps, const BoundaryConditions< 3 > &  bc = FunctionDefaults<3>::get_bc(), int  k = FunctionDefaults<3>::get_k()  )

inlinestatic

Factory function generating separated kernel for convolution with 1/r in 3D.

References k, lo, and OT_G12.

Referenced by madness::F12Potentials::F12Potentials(), madness::MP2::MP2(), madness::PNO::PNO(), madness::Solver< T, NDIM >::Solver(), madness::Znemo::Znemo(), madness::Solver< T, NDIM >::initial_guess(), main(), madness::Solver< T, NDIM >::make_nuclear_potential(), madness::Znemo::recompute_factors_and_potentials(), madness::Coulomb< T, NDIM >::reset_poisson_operator_ptr(), set_poisson(), madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::set_poisson(), madness::Nemo::set_protocol(), Calculation::set_protocol(), and madness::SCF::set_protocol().

cpu_frequency()

double madness::cpu_frequency

(

)

Estimate the processor frequency, in Hz.

First call may take about 0.1s to execute. Subsequent calls return the value, cached from the first call, so it does not respond to changing processor frequency.

If cycle_count() returns wall_time() in nanoseconds, this will return 1GHz.

If not available returns 0.

Returns

CPU frequency, in Hz.

References cycle_count(), and wall_time().

Referenced by cpu_time(), main(), and startup().

cpu_relax()

void madness::cpu_relax ( )

inline

Do nothing and especially do not touch memory.

Todo:

Can we provide some context for this function?

Referenced by madness::MutexReaderWriter::convert_read_lock_to_write_lock(), madness::Barrier::enter(), madness::MutexFair::lock(), madness::MutexReaderWriter::lock(), myusleep(), madness::MutexReaderWriter::read_lock(), madness::MutexWaiter::wait(), madness::ConditionVariable::wait(), and madness::MutexReaderWriter::write_lock().

cpu_time()

static double madness::cpu_time ( )

inlinestatic

Returns the cpu time in seconds relative to an arbitrary origin.

As accurate and lightweight as we can get it, but may not be any better than the clock system call.

Returns

The cpu time, in second.

References cpu_frequency(), and cycle_count().

Referenced by madness::test_output::test_output(), madness::Znemo::timer::timer(), madness::WorldProfileObj::~WorldProfileObj(), madness::SeparatedConvolution< Q, NDIM >::apply(), madness::SeparatedConvolution< Q, NDIM >::apply2(), madness::SeparatedConvolution< Q, NDIM >::apply2_lowdim(), madness::ThreadPool::await(), madness::test_output::checkpoint(), madness::WorldProfile::clear(), madness::FunctionImpl< T, NDIM >::compress_op(), madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::compute_K_tile(), madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::MacroTaskExchangeSimple::compute_offdiagonal_batch_in_symmetric_matrix(), madness::FunctionImpl< T, NDIM >::do_apply_kernel3(), madness::test_output::end(), madness::Znemo::timer::end(), molresponse::end_timer(), DF::end_timer(), END_TIMER(), madness::Solver< T, NDIM >::END_TIMER(), madness::MP2::END_TIMER(), DF::get_times(), madness::timer::interrupt(), main(), myusleep(), madness::BSHApply< T, NDIM >::operator()(), madness::FunctionImpl< T, NDIM >::do_change_tensor_type::operator()(), madness::WorldProfile::print(), print_stats(), madness::timer::resume(), madness::MacroTask< taskT >::MacroTaskInternal::run(), madness::MacroTaskQ::run_all(), madness::CCTimer::start(), madness::MyTimer::start(), molresponse::start_timer(), DF::start_timer(), START_TIMER(), madness::Solver< T, NDIM >::START_TIMER(), madness::MP2::START_TIMER(), madness::CCTimer::stop(), madness::MyTimer::stop(), madness::Znemo::timer::tag(), test9(), test_bsh(), test_Kcommutator(), test_lowrank_function(), test_multi(), test_partial_inner(), test_time(), time_transform(), and madness::CCTimer::update_time().

create_nuclear_correlation_factor() [1/2]

std::shared_ptr< NuclearCorrelationFactor > madness::create_nuclear_correlation_factor	(	World &	world,
		const Molecule &	molecule,
		const std::shared_ptr< PotentialManager >	pm,
		const std::pair< std::string, double > &	ncf
	)

References create_nuclear_correlation_factor(), and molecule.

create_nuclear_correlation_factor() [2/2]

std::shared_ptr< NuclearCorrelationFactor > madness::create_nuclear_correlation_factor	(	World &	world,
		const Molecule &	molecule,
		const std::shared_ptr< PotentialManager >	potentialmanager,
		const std::string	inputline
	)

create and return a new nuclear correlation factor

note there is also an Ad-hoc nuclear correlation factor, which can only be created directly

Parameters

[in]	world	the world
[in]	calc	the calculation as read from the input file

Returns

a nuclear correlation factor

References a, lowercase(), MADNESS_EXCEPTION, molecule, print(), and madness::World::rank().

Referenced by madness::NemoBase::construct_nuclear_correlation_factor(), create_nuclear_correlation_factor(), dnuclear_anchor_test(), main(), and nuclear_anchor_test().

create_response_matrix()

auto madness::create_response_matrix	(	const size_t &	num_states,
		const size_t &	num_orbitals
	)		-> response_matrix

Create a response matrix object.

Parameters

num_states
num_orbitals

Returns

response_matrix

References xi.

Referenced by molresponseExchange().

cross() [1/2]

template<typename T , typename R , std::size_t NDIM>

std::vector<Function<TENSOR_RESULT_TYPE(T,R),NDIM> > madness::cross	(	const std::vector< Function< T, NDIM > > &	f,
		const std::vector< Function< R, NDIM > > &	g,
		bool	do_refine = false,
		bool	fence = true
	)

shorthand cross operator

returns the cross product of vectors f and g

Parameters

[in]	f	the vector of functions on which the rot operator works on
[in]	g	the vector of functions on which the rot operator works on
[in]	fence	fence after completion; currently always fences

Returns

the vector \frac{\partial}{\partial x_i} f TODO: add this to operator fusion

References compress(), d(), f, madness::WorldGopInterface::fence(), g, madness::World::gop, MADNESS_ASSERT, mul(), NDIM, R, reconstruct(), T(), and TENSOR_RESULT_TYPE().

Referenced by madness::Diamagnetic_potential_factor::compute_nabla_R_div_R(), madness::Diamagnetic_potential_factor::compute_U2(), madness::Diamagnetic_potential_factor::compute_v_vector(), madness::Diamagnetic_potential_factor::custom_factor(), madness::Diamagnetic_potential_factor::factor_with_phase(), madness::R_times_arg_div_R::operator()(), and test_cross().

cross() [2/2]

template<typename T , std::size_t N>

std::enable_if<N==3, Vector<T,N> >::type madness::cross	(	const Vector< T, N > &	l,
		const Vector< T, N > &	r
	)

compute the cross product two Vectors of dimension 3

Do a cross product of l and r and return the result in a new Vector.

Template Parameters

T	The Vector element type.
N	The Vector size.

Parameters

[in]	l	The left-hand Vector.
[in]	r	The right-hand Vector.

Returns

the cross product

cstr_to_memory_size()

std::uint64_t madness::cstr_to_memory_size

(

const char *

str

)

Unit-aware conversion of a C string to a size_t.

See https://en.wikipedia.org/wiki/Kilobyte for units. This assumes memory units throughout, i.e. MiB and MB both mean 1024*1024 bytes, etc. To reduce confusion, KiB, kB, and KB all mean 1024 bytes.

Parameters

str	The C string to convert.

Returns

The memory size, in bytes

References MADNESS_ASSERT.

Referenced by madness::RMI::RmiTask::RmiTask(), and madness::WorldGopInterface::initial_max_reducebcast_msg_size().

cubefile_header()

std::vector< std::string > madness::cubefile_header	(	std::string	filename = "input",
		const bool &	no_orient = false
	)

read molecule from the input file and return part of the header for a Gaussian cube file.

Parameters

[in]

filename

input file name (usually "input")

References madness::Molecule::cubefile_header(), filename, molecule, madness::Molecule::orient(), and madness::Molecule::read_file().

Referenced by main(), and madness::MolecularOrbitals< T, NDIM >::print_cubefiles().

cycle_count()

static uint64_t madness::cycle_count ( )

inlinestatic

On some machines we have access to a cycle count.

For small intervals this is probably the most lightweight and accurate timer but may not be meaningful over long intervals due to O/S scheduling, migration to different cores, frequency shifts, etc. On x86 uses rtdsc. Otherwise uses wall_time() in nanoseconds.

Returns

Timing, in cycle count.

References a, d(), and wall_time().

Referenced by cpu_frequency(), and cpu_time().

d2smoothed_potential()

double madness::d2smoothed_potential

(

double

r

)

second radial derivative of the regularized 1/r potential

invoke as d2smoothed_potential(r*rc) * rc*rc*rc with rc the reciprocal smoothing radius d2u[r*rc]*rc*rc*rc \approx 2/r^3

References e(), and madness::constants::pi.

Referenced by madness::Molecule::nuclear_attraction_potential_second_derivative().

decay_types()

template<typename ... Ts>

constexpr auto madness::decay_types ( std::tuple< Ts... > const &  ) -> std::tuple< std::remove_cv_t< std::remove_reference_t< Ts >>... >

constexpr

displacement()

template<size_t NDIM>

Key<NDIM> madness::displacement	(	const Key< NDIM > &	source,
		const Key< NDIM > &	target
	)

given a source and a target, return the displacement in translation

Parameters

[in]	source	the source key
[in]	target	the target key

Returns

disp such that target = source + disp

References MADNESS_ASSERT, source(), and target().

Referenced by madness::MolecularOptimizer::converged(), and madness::MolecularOptimizer::optimize_conjugate_gradients().

distance() [1/5]

double madness::distance	(	const Fred &	a,
		const Fred &	b
	)

References a, and b.

distance() [2/5]

double madness::distance ( double  a, double  b  )

inline

Default function for computing the distance between two doubles.

References a, and b.

Referenced by madness::Molecule::atomic_attraction_potential(), madness::Molecule::core_potential_derivative(), madness::Molecule::find_symmetry_equivalent_atom(), xc_functor< NDIM >::get_distance(), madness::atom_information< NDIM >::get_distance(), madness::int_factor_functor< NDIM >::get_distance(), madness::lr_pot_functor< NDIM >::get_distance(), MolecularEntity::inter_atomic_distance(), madness::Molecule::inter_atomic_distance(), main(), madness::Molecule::mol_nuclear_charge_density(), madness::Molecule::molecular_core_potential(), MolecularEntity::nuclear_attraction_potential(), madness::Molecule::nuclear_attraction_potential(), madness::Molecule::nuclear_attraction_potential_derivative(), and madness::Molecule::symmetrize_for_op().

distance() [3/5]

static double madness::distance ( double  x1, double  y1, double  z1, double  x2, double  y2, double  z2  )

inlinestatic

distance() [4/5]

double madness::distance	(	madness::Function< std::complex< double >, 1ul > &	a,
		madness::Function< std::complex< double >, 1ul > &	b
	)

References a, and b.

distance() [5/5]

template<typename T >

double madness::distance ( std::complex< T > &  a, std::complex< T > &  b  )

inline

Default function for computing the distance between two complex numbers.

References a, std::abs(), and b.

distance_sq()

static double madness::distance_sq ( double  x1, double  y1, double  z1, double  x2, double  y2, double  z2  )

inlinestatic

Referenced by madness::Molecule::nuclear_charge_density().

distributed_localize_PM() [1/2]

DistributedMatrix<double> madness::distributed_localize_PM	(	World &	world,
		const std::vector< Function< double, 3 >> &	mo,
		const std::vector< Function< double, 3 >> &	ao,
		const std::vector< int > &	set,
		const std::vector< int > &	at_to_bf,
		const std::vector< int > &	at_nbf,
		const double	thresh = 1e-9,
		const double	thetamax = 0.5,
		const bool	randomize = true,
		const bool	doprint = false
	)

distributed_localize_PM() [2/2]

DistributedMatrix<double> madness::distributed_localize_PM	(	World &	world,
		const vecfuncT &	mo,
		const vecfuncT &	ao,
		const std::vector< int > &	set,
		const std::vector< int > &	at_to_bf,
		const std::vector< int > &	at_nbf,
		const double	thresh,
		const double	thetamax,
		const bool	randomize,
		const bool	doprint
	)

References A(), a, madness::WorldTaskQueue::add(), at_nbf, at_to_bf, concatenate_rows(), copy(), madness::BaseTensor::dim(), madness::DistributedMatrix< T >::extract_columns(), madness::WorldTaskQueue::fence(), madness::DistributedMatrix< T >::fill_identity(), matrix_inner(), madness::World::taskq, and thresh.

Referenced by madness::Localizer::localize_PM().

div()

template<typename T , std::size_t NDIM>

Function<T,NDIM> madness::div	(	const std::vector< Function< T, NDIM > > &	v,
		bool	do_refine = false,
		bool	fence = true
	)

shorthand div operator

returns the dot product of nabla with a vector f

Parameters

[in]	f	the vector of functions on which the div operator works on
[in]	refine	refinement before diff'ing makes the result more accurate
[in]	fence	fence after completion; currently always fences

Returns

the vector \frac{\partial}{\partial x_i} f TODO: add this to operator fusion

References apply(), madness::WorldGopInterface::fence(), madness::World::gop, grad(), MADNESS_ASSERT, NDIM, reconstruct(), refine(), sum(), and v.

Referenced by madness::Znemo::compute_current_density(), madness::Diamagnetic_potential_factor::compute_R_times_T_commutator_scalar_term_numerically(), test_rot(), and testNavierStokes().

do_adq()

template<typename funcT >

funcT::returnT madness::do_adq	(	double	lo,
		double	hi,
		const funcT &	func,
		int	n,
		const double *	x,
		const double *	w
	)

References func(), lo, sum(), and w().

Referenced by adq1().

do_response_density_vtk_plots()

void madness::do_response_density_vtk_plots	(	World &	world,
		int	npt_plot,
		double	L,
		const Molecule &	molecule,
		const real_function_3d &	ground_density,
		const vector_real_function_3d &	response_density
	)

References filename, L, and points.

do_response_orbital_vtk_plots()

void madness::do_response_orbital_vtk_plots	(	World &	world,
		int	npt_plot,
		double	L,
		const Molecule &	molecule,
		const vector_real_function_3d &	ground_orbs,
		const response_matrix &	responseMatrix
	)

References f, filename, L, molecule, points, and write_molecules_to_file().

do_vtk_plots() [1/2]

void madness::do_vtk_plots	(	World &	world,
		int	npt_plot,
		double	L,
		int	lowest_orbital,
		int	highest_orbital,
		const Molecule &	molecule,
		std::vector< real_function_3d >	densities,
		const std::string &	name
	)

References b, f, filename, L, name(), and points.

do_vtk_plots() [2/2]

void madness::do_vtk_plots	(	World &	world,
		int	npt_plot,
		double	L,
		Molecule	molecule,
		real_function_3d &	rho_0,
		std::vector< real_function_3d > &	rho_omega,
		std::vector< real_function_3d > &	ground_orbitals,
		X_space &	Chi
	)

References atomic_number_to_symbol(), f, filename, L, molecule, madness::X_space::num_orbitals(), madness::X_space::num_states(), points, rho_0, madness::X_space::x, and madness::X_space::y.

dot()

template<typename T , typename R , std::size_t NDIM>

Function<TENSOR_RESULT_TYPE(T,R), NDIM> madness::dot	(	World &	world,
		const std::vector< Function< T, NDIM > > &	a,
		const std::vector< Function< R, NDIM > > &	b,
		bool	fence = true
	)

Multiplies and sums two vectors of functions r = \sum_i a[i] * b[i].

References a, b, MADNESS_CHECK, mul(), and sum().

Referenced by madness::TDHF::analyze(), madness::Nemo::compute_all_cphf(), madness::Znemo::compute_current_density(), madness::OEP::compute_dcep_correction(), madness::OEP::compute_density(), madness::OEP::compute_energy_weighted_density_local(), madness::OEP::compute_exchange_energy_vir(), madness::NemoBase::compute_kinetic_energy(), madness::Diamagnetic_potential_factor::compute_lz_commutator(), madness::OEP::compute_mrks_correction(), madness::OEP::compute_ocep_correction(), madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::MacroTaskExchangeSimple::compute_offdiagonal_batch_in_symmetric_matrix(), madness::OEP::compute_Pauli_kinetic_density(), madness::Zcis::compute_potentials(), madness::OEP::compute_slater_potential(), madness::OEP::compute_total_kinetic_density(), madness::Zcis::iterate(), madness::Nemo::kinetic_energy_potential(), main(), madness::Zcis::make_guess(), madness::Nemo::make_incomplete_hessian_response_part(), madness::Nemo::make_sigma(), madness::NuclearCorrelationFactor::U3_atomic_functor::operator()(), madness::NuclearCorrelationFactor::U3X_functor::operator()(), madness::XCOperator< T, NDIM >::prep_xc_args(), madness::XCOperator< T, NDIM >::prep_xc_args_response(), madness::Nemo::solve_cphf(), and test_inner().

DPEC() [1/6]

madness::DPEC	(	double	,
		double	,
		double
	)

DPEC() [2/6]

madness::DPEC	(	double_complex	,
		double_complex	,
		double_complex
	)

DPEC() [3/6]

madness::DPEC	(	float	,
		float	,
		float
	)

DPEC() [4/6]

madness::DPEC	(	float_complex	,
		float_complex	,
		float_complex
	)

DPEC() [5/6]

madness::DPEC	(	int	,
		int	,
		int
	)

DPEC() [6/6]

madness::DPEC	(	long	,
		long	,
		long
	)

drot()

void madness::drot	(	long	n,
		double *MADNESS_RESTRICT	a,
		double *MADNESS_RESTRICT	b,
		double	s,
		double	c,
		long	inc
	)

Simple (?) version of BLAS-1 DROT(N, DX, INCX, DY, INCY, DC, DS)

References a, aa, b, and c.

Referenced by madness::SystolicPMOrbitalLocalize::localize_PM_ij(), main(), and BoysLocalization::operator()().

dsmoothed_potential()

double madness::dsmoothed_potential

(

double

r

)

Derivative of the regularized 1/r potential.

dV/dx = (x/r) * du(r/c)/(c*c)

References a, and r2().

Referenced by madness::CorePotential::eval_derivative(), madness::Molecule::nuclear_attraction_potential_derivative(), Vderiv::operator()(), and madness::PseudoNuclearCorrelationFactor::U2X_spherical().

dxprintvalue() [1/2]

static void madness::dxprintvalue ( FILE *  f, const double  t  )

inlinestatic

References f.

Referenced by plotdx().

dxprintvalue() [2/2]

static void madness::dxprintvalue ( FILE *  f, const double_complex &  t  )

inlinestatic

References f.

end_papi_measurement()

void madness::end_papi_measurement ( )

inline

Referenced by madness::ThreadBase::main(), and print_stats().

END_TIMER()

static void madness::END_TIMER ( World &  world, const char *  msg  )

static

References cpu_time(), pop(), print_timings, madness::World::rank(), sss, ttt, and wall_time().

Referenced by madness::SCF::analyze_vectors(), KPeriodicBSHOperator::apply(), apply_potential(), madness::SCF::apply_potential(), madness::SCF::compute_residual(), madness::SCF::derivatives(), madness::SCF::diag_fock_matrix(), madness::SCF::dipole(), madness::SCF::do_plots(), madness::SCF::initial_guess(), madness::SCF::kinetic_energy_matrix(), main(), make_coulomb_potential(), make_density(), madness::SCF::make_fock_matrix(), make_kinetic_matrix(), make_lda_potential(), madness::SCF::make_nuclear_potential(), Calculation::make_reference(), Calculation::make_Upsi(), makeao(), orthogonalize(), madness::SCF::orthonormalize(), madness::SCF::solve(), test_coulomb(), test_cross(), test_diff(), test_inner(), test_matrix_mul_sparse(), test_op(), test_rot(), test_transform(), and madness::SCF::update_subspace().

enforce_bc()

static bool madness::enforce_bc ( bool  is_periodic, Level  n, Translation &  l  )

inlinestatic

error() [1/2]

void madness::error

(

const char *

msg

)

Todo:

Brief description needed.

Todo:

Detailed description needed. I imagine this prints/logs the supplied error message and subsequently aborts the program.

Parameters

[in]

msg

Message associated with the error.

References SafeMPI::Intracomm::Abort(), and SafeMPI::COMM_WORLD.

Referenced by madness::DomainMaskSDFFunctor< NDIM >::DomainMaskSDFFunctor(), EmbeddedDirichlet::EmbeddedDirichlet(), madness::DependencyInterface::~DependencyInterface(), madness::WorldGopInterface::barrier(), check(), madness::Localizer::check_core_valence_separation(), madness::PNO::check_orthonormality(), check_vector(), madness::test_output::checkpoint(), madness::CCConvolutionOperator< T, NDIM >::clear_intermediates(), compare(), madness::FunctionImpl< T, NDIM >::Vphi_op_NS< opT, LDIM >::compute_error_from_inaccurate_refinement(), madness::DependencyInterface::dec(), madness::DependencyInterface::dec_debug(), doit(), madness::DependencyInterface::inc(), madness::DependencyInterface::inc_debug(), madness::CC2::initialize_pairs(), madness::CC2::iterate_pair(), madness::LowRankFunction< T, NDIM, LDIM >::l2error(), Calculation::load_mos(), main(), madness::ThreadBase::main(), madness::FunctionImpl< T, NDIM >::Vphi_op_NS< opT, LDIM >::make_sum_coeffs(), madness::MP2::make_Uphi0(), madness::FunctionImpl< T, NDIM >::Vphi_op_NS< opT, LDIM >::operator()(), madness::hartree_leaf_op< T, NDIM >::operator()(), madness::hartree_convolute_leaf_op< T, NDIM, LDIM, opT >::operator()(), EmbeddedDirichlet::operator()(), madness::DomainMaskSDFFunctor< NDIM >::operator()(), madness::FunctionImpl< T, NDIM >::do_inner_local_on_demand< R >::operator()(), madness::FunctionImpl< T, NDIM >::do_truncate_NS_leafs::operator()(), madness::FunctionImpl< T, NDIM >::print_plane_local(), madness::test_output::print_success_fail(), madness::CalculationParameters::set_derived_values(), madness::DomainMaskSDFFunctor< NDIM >::setMaskFunction(), madness::TDHF::test(), test(), Test1(), Test5(), Test6(), Test6a(), Test7(), test_add(), test_addition(), test_combined_operators(), test_construction_optimization(), test_custom_worldobject(), test_emul(), test_G_R_vectors(), test_gaussian_num_coeffs(), test_gconv(), test_hf_be(), test_hf_he(), test_integration(), test_lowrank_function(), madness::Diamagnetic_potential_factor::test_lz_commutator(), test_molecular_grid(), test_multi_to_multi_op(), test_nuclear_energy(), test_nuclear_potential(), test_nuclear_potential2(), test_nuclear_potential3(), test_nuclear_potential_big_unit_cell(), test_orthogonalization(), test_per(), test_projector(), test_qr(), test_reconstruct(), test_reduce_rank(), test_sliced_addition(), test_sliced_assignment(), test_spherical_box(), test_stuff(), madness::Znemo::test_U_potentials(), madness::Diamagnetic_potential_factor::test_vector_potentials(), testNavierStokes(), testPeriodicCoulomb3d(), and madness::CCConvolutionOperator< T, NDIM >::update_elements().

error() [2/2]

template<typename T >

static void madness::error ( const char *  msg, const T &  data  )

static

Prints an error message, along with some data, and aborts the program.

Todo:

Does this function need to be static? (Esp. since it's in a header file...)

Template Parameters

T	The type of data.

Parameters

[in]	msg	The error message.
[in]	data	The data to be printed.

References SafeMPI::Intracomm::Abort(), and SafeMPI::COMM_WORLD.

estimate_area()

double madness::estimate_area

(

double

x

)

References madness::FunctionDefaults< NDIM >::get_thresh(), and thresh.

exception_break()

void madness::exception_break

(

bool

message

)

This function is executed just before a MadnessException is thrown.

Parameters

[in]

message

True to print an error message to cerr; false otherwise.

exchange_anchor_test()

template<typename T >

int madness::exchange_anchor_test	(	World &	world,
		Exchange< T, 3 > &	K,
		const double	thresh
	)

anchor test for the exchange operator – partially hardwired

References alpha, check_err(), diff(), madness::Tensor< T >::fill(), madness::FunctionFactory< T, NDIM >::functor(), k, K(), matrix_inner(), norm2s(), print(), madness::BaseTensor::size(), sub(), thresh, madness::FunctionFactory< T, NDIM >::thresh(), and madness::FunctionFactory< T, NDIM >::truncate_on_project().

Referenced by test_exchange(), and test_exchange().

F2GOperator()

static SeparatedConvolution<double,3> madness::F2GOperator ( World &  world, double  mu, double  lo, double  eps, const BoundaryConditions< 3 > &  bc = FunctionDefaults<3>::get_bc(), int  k = FunctionDefaults<3>::get_k()  )

inlinestatic

Factory function generating separated kernel for convolution with (1/(2 mu)*(1 - exp(-mu*r)))^2/r in 3D.

f2g = (1/(2 gamma) (1 - exp(-gamma r12)))^2 / r12 = 1/(4 gamma) * [ 1/r12 - 2 exp(-gamma r12)/r12 + exp(-2 gamma r12)/r12 ] includes the factor 1/(2 mu)^2

References k, lo, mu, and OT_F2G12.

F2GOperatorPtr()

static SeparatedConvolution<double,3>* madness::F2GOperatorPtr ( World &  world, double  mu, double  lo, double  eps, const BoundaryConditions< 3 > &  bc = FunctionDefaults<3>::get_bc(), int  k = FunctionDefaults<3>::get_k()  )

inlinestatic

Factory function generating separated kernel for convolution with (1/(2 mu)*(1 - exp(-mu*r)))^2/r in 3D.

f2g = (1/(2 gamma) (1 - exp(-gamma r12)))^2 / r12 = 1/(4 gamma) * [ 1/r12 - 2 exp(-gamma r12)/r12 + exp(-2 gamma r12)/r12 ] includes the factor 1/(2 mu)^2

References k, lo, mu, and OT_F2G12.

fast_transpose()

template<typename T >

void madness::fast_transpose ( long  n, long  m, const T *  a, T *MADNESS_RESTRICT  b  )

inline

a(n,m) --> b(m,n) ... optimized for smallish matrices

References a, a1, a2, b, m, and T().

Referenced by madness::SeparatedConvolution< Q, NDIM >::apply_transformation(), madness::SeparatedConvolution< Q, NDIM >::apply_transformation2(), madness::Convolution1D< Q >::mod_nonstandard(), and madness::Convolution1D< Q >::nonstandard().

fcube() [1/3]

template<typename T , std::size_t NDIM>

Tensor< T > madness::fcube	(	const Key< NDIM > &	key,
		T(*)(const Vector< double, NDIM > &)	f,
		const Tensor< double > &	qx
	)

References madness::BaseTensor::dim(), f, and NDIM.

Referenced by fcube(), madness::FunctionImpl< T, NDIM >::fcube(), madness::FunctionImpl< T, NDIM >::gaxpy_ext_node(), madness::guessfactory::ExopUnaryOpStructure::operator()(), madness::BinaryOpStructure< NDIM >::operator()(), madness::UnaryOpStructure< NDIM >::operator()(), madness::FunctionImpl< T, NDIM >::project(), and madness::ElementaryInterface< T, NDIM >::values().

fcube() [2/3]

template<typename T , std::size_t NDIM>

Tensor< T > madness::fcube	(	const Key< NDIM > &	key,
		const FunctionFunctorInterface< T, NDIM > &	f,
		const Tensor< double > &	qx
	)

References madness::BaseTensor::dim(), f, fcube(), and NDIM.

fcube() [3/3]

template<typename T , std::size_t NDIM>

void madness::fcube	(	const Key< NDIM > &	key,
		const FunctionFunctorInterface< T, NDIM > &	f,
		const Tensor< double > &	qx,
		Tensor< T > &	fval
	)

forward declaration

References ___, c, madness::BaseTensor::dim(), f, madness::FunctionDefaults< NDIM >::get_cell(), madness::FunctionDefaults< NDIM >::get_cell_width(), h(), std::isnan(), k, madness::Key< NDIM >::level(), m, MADNESS_ASSERT, MADNESS_EXCEPTION, NDIM, p(), pow(), madness::Tensor< T >::ptr(), T(), and madness::Key< NDIM >::translation().

FGOperator()

static SeparatedConvolution<double,3> madness::FGOperator ( World &  world, double  mu, double  lo, double  eps, const BoundaryConditions< 3 > &  bc = FunctionDefaults<3>::get_bc(), int  k = FunctionDefaults<3>::get_k()  )

inlinestatic

Factory function generating separated kernel for convolution with 1/(2 mu)*(1 - exp(-mu*r))/r in 3D.

fg = (1 - exp(-gamma r12)) / r12 = 1/r12 - exp(-gamma r12)/r12 = coulomb - bsh includes the factor 1/(2 mu)

References k, lo, mu, and OT_FG12.

FGOperatorPtr()

static SeparatedConvolution<double,3>* madness::FGOperatorPtr ( World &  world, double  mu, double  lo, double  eps, const BoundaryConditions< 3 > &  bc = FunctionDefaults<3>::get_bc(), int  k = FunctionDefaults<3>::get_k()  )

inlinestatic

Factory function generating separated kernel for convolution with 1/(2 mu)*(1 - exp(-mu*r))/r in 3D.

fg = (1 - exp(-gamma r12)) / r12 = 1/r12 - exp(-gamma r12)/r12 = coulomb - bsh includes the factor 1/(2 mu)

References k, lo, mu, and OT_FG12.

finalize()

void madness::finalize

(

)

Call this once at the very end of your main program instead of MPI_Finalize().

Referenced by main(), main(), TEST_CASE(), test_G_R_vectors(), test_gaussian_num_coeffs(), test_nuclear_energy(), test_nuclear_potential(), test_nuclear_potential2(), test_nuclear_potential3(), test_nuclear_potential_big_unit_cell(), and testNavierStokes().

flatten()

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::flatten

(

const std::vector< std::vector< Function< T, NDIM > > > &

vv

)

References append().

Referenced by madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::MacroTaskExchangeSimple::compute_offdiagonal_batch_in_symmetric_matrix(), and madness::PNO::t_solve().

foreach_child() [1/2]

template<std::size_t NDIM, typename objT >

void madness::foreach_child ( const Key< NDIM > &  parent, objT *  obj, void(objT::*)(const Key< NDIM > &)  memfun  )

inline

Applies member function of obj to each child key of parent.

foreach_child() [2/2]

template<std::size_t NDIM, typename opT >

void madness::foreach_child ( const Key< NDIM > &  parent, opT &  op  )

inline

Applies op(key) to each child key of parent.

References op().

free_am_arg()

void madness::free_am_arg ( AmArg *  arg )

inline

Frees an AmArg allocated with alloc_am_arg.

References arg().

Referenced by madness::WorldAmInterface::SendReq::free(), and madness::detail::PendingMsg::invokehandler().

free_space_derivative()

template<typename T , std::size_t NDIM>

Derivative<T,NDIM> madness::free_space_derivative	(	World &	world,
		int	axis,
		int	k = FunctionDefaults<NDIM>::get_k()
	)

Convenience function returning derivative operator with free-space boundary conditions.

References axis, BC_FREE, and k.

from_json()

void madness::madness::from_json	(	const nlohmann::json &	j,
		ResponseParameters &	p
	)

References p(), and print().

func()

std::shared_ptr< FunctionFunctorInterface<double,3> > madness::func

(

new

opTg

)

Referenced by spherical_harmonic::spherical_harmonic(), abs(), abs_square(), adq(), adq1(), madness::PotentialManager::core_projector_derivative(), madness::SCF::derivatives(), do_adq(), madness::FunctionImpl< T, NDIM >::err_box(), madness::FunctionImpl< T, NDIM >::errsq_local(), madness::WorldAmInterface::handler(), imag(), madness::RMI::isend(), make_func(), madness::FunctionImpl< T, NDIM >::make_Vphi(), madness::EigSolverOp< T, NDIM >::op_o(), madness::EigSolverOp< T, NDIM >::op_r(), spherical_harmonic::operator()(), madness::FunctionImpl< T, NDIM >::do_inner_local_on_demand< R >::operator()(), madness::RMI::RmiTask::process_some(), real(), madness::CCPair::serialize(), madness::NuclearCorrelationFactor::square_times_V_derivative(), test2(), test_hydro(), unary_op(), unary_op_coeffs(), madness::FunctionImpl< T, NDIM >::unaryXX(), madness::FunctionImpl< T, NDIM >::unaryXXa(), and madness::FunctionImpl< T, NDIM >::unaryXXvalues().

function_real2complex()

template<typename Q , int NDIM>

Function<std::complex<Q>,NDIM> madness::function_real2complex

(

const Function< Q, NDIM > &

r

)

References unary_op_coeffs().

Referenced by madness::InitParameters::read(), and madness::InitParameters::readnw().

functor_r2()

static double madness::functor_r2 ( const coord_3d &  r )

static

functor_x()

static double madness::functor_x ( const coord_3d &  r )

static

functor_y()

static double madness::functor_y ( const coord_3d &  r )

static

future_vector_factory()

template<typename T >

std::vector< Future<T> > madness::future_vector_factory

(

std::size_t

n

)

Factory for a vectors of futures.

Rationale for this function can be found in Futures.

Template Parameters

T	The type of future in the vector.

Parameters

[in]

n

The size of the vector to create.

Returns

A vector of futures, as described in Futures.

References madness::Future< T >::default_initializer().

gauss_legendre()

bool madness::gauss_legendre	(	int	n,
		double	xlo,
		double	xhi,
		double *	x,
		double *	w
	)

Return precomputed (most accurate) or if not available computed (not quite as accurate) points and weights for Gauss Legendre quadrature rule on the specified interval.

References gauss_legendre_numeric(), max_npt, points, read_data(), w(), and weights.

Referenced by madness::Convolution1D< Q >::Convolution1D(), madness::SpectralPropagator::SpectralPropagator(), madness::FunctionCommonData< T, NDIM >::_init_quadrature(), adq(), gauss_legendre_test(), and readin().

gauss_legendre_numeric()

bool madness::gauss_legendre_numeric	(	int	n,
		double	xlo,
		double	xhi,
		double *	x,
		double *	w
	)

Compute the Gauss-Legendre quadrature points and weights.

Return in x and w, which should be arrays of n elements, the points and weights for the n-point Gauss Legendre quadrature rule in [xlo,xhi].

!!!! This routine delivers accurate points, but some weights are accurate only to about 1e-13 for higher order rules. Need a more intelligent way to compute them. See internal comments for more info.

References std::abs(), delta, e(), k, legendre_polynomials(), p(), pi, scale(), and w().

Referenced by gauss_legendre().

gauss_legendre_test()

bool madness::gauss_legendre_test

(

bool

print

)

Check error in numerical integ(x+x^2+...+x^(2n-1),x=0..1) using n-pt rule.

References std::abs(), gauss_legendre(), print(), sum(), testf(), and w().

Referenced by startup().

GaussOperator()

template<std::size_t NDIM>

static SeparatedConvolution<double,NDIM> madness::GaussOperator ( World &  world, double  mu, double  lo = 0.0, double  eps = 0.0, const BoundaryConditions< NDIM > &  bc = FunctionDefaults<NDIM>::get_bc(), int  k = FunctionDefaults<NDIM>::get_k()  )

inlinestatic

Factory function generating separated kernel for convolution with exp(-mu*r*r)

lo and eps are not used here

References k, lo, mu, and OT_GAUSS.

GaussOperatorPtr()

template<std::size_t NDIM>

static SeparatedConvolution<double, NDIM>* madness::GaussOperatorPtr ( World &  world, double  mu, double  lo = 0.0, double  eps = 0.0, const BoundaryConditions< NDIM > &  bc = FunctionDefaults<NDIM>::get_bc(), int  k = FunctionDefaults<NDIM>::get_k()  )

inlinestatic

Factory function generating separated kernel for convolution with exp(-mu*r*r) in 3D.

lo and eps are not used here

References k, lo, mu, and OT_GAUSS.

gaxpy() [1/5]

template<typename T >

void madness::gaxpy	(	const double	a,
		ScalarResult< T > &	left,
		const double	b,
		const T &	right,
		const bool	fence = true
	)

the result type of a macrotask must implement gaxpy

References a, b, and madness::ScalarResult< T >::gaxpy().

Referenced by madness::PotentialManager::apply_nonlocal_potential(), madness::GTHPseudopotential< Q >::apply_potential(), apply_potential(), madness::SCF::apply_potential(), madness::projector_irrep::apply_symmetry_operators(), madness::SCF::compute_residual(), madness::Solver< T, NDIM >::do_rhs(), DF::exchange(), gaxpy(), madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::K_small_memory(), kinetic_energy_matrix(), madness::Nemo::kinetic_energy_potential(), main(), Calculation::make_reference(), madness::EigSolver< T, NDIM >::multi_solve(), madness::response_space::operator+=(), madness::X_space::operator+=(), operator+=(), operator-=(), q_c(), madness::MacroTask< taskT >::MacroTaskInternal::run(), madness::Nemo::solve_cphf(), madness::Solver< T, NDIM >::step_restriction(), test_custom_worldobject(), testNavierStokes(), madness::TDHF::transform(), transform(), madness::Zcis::transform(), transform(), update(), MiniDFT::update(), madness::SubspaceK< T, NDIM >::update_subspace(), madness::Subspace< T, NDIM >::update_subspace(), madness::SCF::update_subspace(), and Subspace::update_subspace().

gaxpy() [2/5]

template<typename T , typename Q , typename R , std::size_t NDIM>

void madness::gaxpy	(	Q	alpha,
		std::vector< Function< T, NDIM >> &	a,
		Q	beta,
		const std::vector< Function< R, NDIM >> &	b,
		const bool	fence
	)

Generalized A*X+Y for vectors of functions -— a[i] = alpha*a[i] + beta*b[i].

References a, alpha, b, beta, and gaxpy().

gaxpy() [3/5]

template<typename L , typename R , std::size_t NDIM>

void madness::gaxpy	(	TENSOR_RESULT_TYPE(L, R)	alpha,
		Function< L, NDIM > &	left,
		TENSOR_RESULT_TYPE(L, R)	beta,
		const Function< R, NDIM > &	right,
		bool	fence = true
	)

adds beta*right only left: alpha*left + beta*right optional fence and no automatic compression

left and right might live in different worlds, the accumulation is non-blocking

References alpha, beta, madness::Function< T, NDIM >::gaxpy(), L, NDIM, PROFILE_FUNC, R, and TENSOR_RESULT_TYPE().

gaxpy() [4/5]

template<typename T , typename Q , typename R , std::size_t NDIM>

void madness::gaxpy	(	World &	world,
		Q	alpha,
		std::vector< Function< T, NDIM > > &	a,
		Q	beta,
		const std::vector< Function< R, NDIM > > &	b,
		bool	fence = true
	)

Generalized A*X+Y for vectors of functions -— a[i] = alpha*a[i] + beta*b[i].

References a, aa, alpha, b, beta, compress(), madness::WorldGopInterface::fence(), madness::World::gop, MADNESS_ASSERT, MADNESS_CHECK_THROW, and PROFILE_BLOCK.

gaxpy() [5/5]

template<typename T , typename Q , typename R , std::size_t NDIM>

void madness::gaxpy	(	World &	world,
		Q	alpha,
		std::vector< Function< T, NDIM > > &	a,
		Q	beta,
		const std::vector< Function< R, NDIM > > &	b,
		unsigned int	blk = 1,
		bool	fence = true
	)

Generalized A*X+Y for vectors of functions -— a[i] = alpha*a[i] + beta*b[i].

References a, alpha, b, beta, compress(), madness::WorldGopInterface::fence(), gaxpy(), madness::World::gop, MADNESS_ASSERT, and PROFILE_BLOCK.

gaxpy_oop() [1/3]

template<typename T , typename Q , typename R , std::size_t NDIM>

std::vector<Function<TENSOR_RESULT_TYPE(Q,TENSOR_RESULT_TYPE(T,R)),NDIM> > madness::gaxpy_oop	(	Q	alpha,
		const std::vector< Function< T, NDIM > > &	a,
		Q	beta,
		const Function< R, NDIM > &	b,
		bool	fence = true
	)

out-of-place gaxpy for a vectors and a function: result[i] = alpha * a[i] + beta * b

References a, alpha, b, beta, compress(), gaxpy_oop(), Q(), R, T(), and TENSOR_RESULT_TYPE().

gaxpy_oop() [2/3]

template<typename T , typename Q , typename R , std::size_t NDIM>

std::vector<Function<TENSOR_RESULT_TYPE(Q,TENSOR_RESULT_TYPE(T,R)),NDIM> > madness::gaxpy_oop	(	Q	alpha,
		const std::vector< Function< T, NDIM > > &	a,
		Q	beta,
		const std::vector< Function< R, NDIM > > &	b,
		bool	fence = true
	)

out-of-place gaxpy for two vectors: result[i] = alpha * a[i] + beta * b[i]

References a, alpha, b, beta, compress(), gaxpy_oop(), MADNESS_ASSERT, Q(), R, T(), and TENSOR_RESULT_TYPE().

gaxpy_oop() [3/3]

template<typename L , typename R , std::size_t NDIM>

Function<TENSOR_RESULT_TYPE(L,R),NDIM> madness::gaxpy_oop	(	TENSOR_RESULT_TYPE(L, R)	alpha,
		const Function< L, NDIM > &	left,
		TENSOR_RESULT_TYPE(L, R)	beta,
		const Function< R, NDIM > &	right,
		bool	fence = true
	)

Returns new function alpha*left + beta*right optional fence and no automatic compression.

References alpha, beta, L, NDIM, PROFILE_FUNC, R, and TENSOR_RESULT_TYPE().

Referenced by add(), gaxpy_oop(), madness::response_space::operator+(), operator+(), madness::response_space::operator-(), operator-(), response_exchange_multiworld(), sub(), and test_add().

gaxpy_oop_reconstructed()

template<typename T , std::size_t NDIM>

Function<T,NDIM> madness::gaxpy_oop_reconstructed	(	const double	alpha,
		const Function< T, NDIM > &	left,
		const double	beta,
		const Function< T, NDIM > &	right,
		const bool	fence = true
	)

Returns new function alpha*left + beta*right optional fence, having both addends reconstructed.

References alpha, beta, madness::Function< T, NDIM >::get_impl(), madness::Function< T, NDIM >::is_reconstructed(), MADNESS_ASSERT, and madness::Function< T, NDIM >::set_impl().

Referenced by operator+(), operator-(), and test_add().

geev() [1/2]

template void madness::geev	(	const Tensor< double > &	A,
		Tensor< double > &	V,
		Tensor< double_complex > &	e
	)

geev() [2/2]

template<typename T >

void madness::geev	(	const Tensor< T > &	A,
		Tensor< T > &	VR,
		Tensor< std::complex< T >> &	e
	)

Real non-symmetric or complex non-Hermitian eigenproblem.

Solves non-symmetric or non-Hermitian eigenvalue problem.

A is a real non-symmetric or complex non-Hermitian matrix. Return V and e where V is a matrix whose columns are the right eigenvectors and e is a vector containing the corresponding eigenvalues. If the LAPACK routine fails, it raises a TensorException with value=infor. The input matrix is unchanged. The eigenvalues are sorted into ascending order. s/dgeev are used for real non-symmetric matrices; c/zgeev are used for complex non-Hermitian.

Note on the eigenvectors: If the j-th eigenvalue is real, then j-th eigenvector is VR(:,j), the j-th column of VR. If the j-th and (j+1)-st eigenvalues form a complex conjugate pair, then j-th eigenvector is VR(:,j) + i*VR(:,j+1) and j+1-th eigenvector is VR(:,j) - i*VR(:,j+1).

The results will satisfy A*V(_,i) = V(_,i)*e(i).

References copy(), e(), geev_(), mask_info(), max, madness::Tensor< T >::ptr(), and TENSOR_ASSERT.

Referenced by geevp().

geevp()

template<typename T >

void madness::geevp	(	World &	world,
		const Tensor< T > &	A,
		Tensor< T > &	VR,
		Tensor< std::complex< T >> &	e
	)

References e(), and geev().

gelss() [1/3]

template void madness::gelss	(	const Tensor< double > &	a,
		const Tensor< double > &	b,
		double	rcond,
		Tensor< double > &	x,
		Tensor< Tensor< double >::scalar_type > &	s,
		long &	rank,
		Tensor< Tensor< double >::scalar_type > &	sumsq
	)

gelss() [2/3]

template void madness::gelss	(	const Tensor< double_complex > &	a,
		const Tensor< double_complex > &	b,
		double	rcond,
		Tensor< double_complex > &	x,
		Tensor< Tensor< double_complex >::scalar_type > &	s,
		long &	rank,
		Tensor< Tensor< double_complex >::scalar_type > &	sumsq
	)

gelss() [3/3]

template<typename T >

void madness::gelss	(	const Tensor< T > &	a,
		const Tensor< T > &	b,
		double	rcond,
		Tensor< T > &	x,
		Tensor< typename Tensor< T >::scalar_type > &	s,
		long &	rank,
		Tensor< typename Tensor< T >::scalar_type > &	sumsq
	)

Solve Ax = b for general A using the LAPACK *gelss routines.

Solves linear equations using least squares.

A should be a matrix (float, double, float_complex, double_complex) and b should be either a vector, or a matrix with each vector stored in a column (i.e., b[n,nrhs]).

If the LAPACK routine fails, it throws a TensorException with the LAPACK info as the value. Otherwise, it returns the solution(s). The input A and b are unchanged. There is no need to worry about Python/C/Fortran ordering issues. It will solve Ax=b as written.

This from the LAPACK documentation

RCOND   (input) REAL
RCOND is used to determine the effective  rank  of A.
Singular values S(i) <= RCOND*S(1) are treated
as zero.  If RCOND < 0, machine precision is  used
instead.

RANK    (output) INTEGER
The  effective rank of A, i.e., the number of singular
values which are greater than RCOND*S(1).

Finally, the optional vector sumsq will store the sum-of-squares residual in the case of a rectangular matrix (least squares regression).

References a, b, copy(), gelss_(), m, mask_info(), max, madness::Tensor< T >::normf(), madness::Tensor< T >::ptr(), TENSOR_ASSERT, and transpose().

Referenced by Calculation::calc_optimal_coeffs(), GMRES(), KAIN(), KAIN(), optimize_coeffs(), and test_gelss().

general_transform() [1/2]

template<typename R , typename Q >

GenTensor< TENSOR_RESULT_TYPE(R, Q)> madness::general_transform	(	const GenTensor< R > &	t,
		const Tensor< Q >	c[]
	)

Similar to transform but each dimension is transformed with a distinct matrix.

result(i,j,k...) <-- sum(i',j', k',...) t(i',j',k',...) c[0](i',i) c[1](j',j) c[2](k',k) ...

The first dimension of the matrices c must match the corresponding dimension of t. template <typename R, typename Q>

Referenced by madness::SeparatedConvolution< Q, NDIM >::apply_transformation2(), madness::SeparatedConvolution< Q, NDIM >::apply_transformation3(), madness::FunctionImpl< T, NDIM >::downsample(), madness::FunctionImpl< T, NDIM >::fcube_for_mul(), madness::FunctionImpl< T, NDIM >::NS_fcube_for_mul(), madness::SeparatedConvolution< Q, NDIM >::partial_upsample(), test_general_transform(), madness::SeparatedConvolution< Q, NDIM >::upsample(), and madness::FunctionImpl< T, NDIM >::upsample().

general_transform() [2/2]

template<typename R , typename Q >

SVDTensor<TENSOR_RESULT_TYPE(R,Q)> madness::general_transform	(	const SVDTensor< R > &	t,
		const Tensor< Q >	c[]
	)

geqp3() [1/3]

template void madness::geqp3	(	Tensor< double > &	A,
		Tensor< double > &	tau,
		Tensor< integer > &	jpvt
	)

geqp3() [2/3]

template void madness::geqp3	(	Tensor< double_complex > &	A,
		Tensor< double_complex > &	tau,
		Tensor< integer > &	jpvt
	)

geqp3() [3/3]

template<typename T >

void madness::geqp3	(	Tensor< T > &	A,
		Tensor< T > &	tau,
		Tensor< integer > &	jpvt
	)

Compute the QR factorization.

Q is returned in the lapack-specific format

References geqp3_result(), m, TENSOR_ASSERT, and transpose().

geqp3_result()

template<typename T >

void madness::geqp3_result	(	Tensor< T > &	A,
		Tensor< T > &	tau,
		Tensor< integer > &	jpvt,
		Tensor< T > &	work
	)

References geqp3_(), m, mask_info(), madness::Tensor< T >::ptr(), madness::BaseTensor::size(), and TENSOR_ASSERT.

Referenced by geqp3().

gesv() [1/3]

template void madness::gesv	(	const Tensor< double > &	a,
		const Tensor< double > &	b,
		Tensor< double > &	x
	)

gesv() [2/3]

template void madness::gesv	(	const Tensor< double_complex > &	a,
		const Tensor< double_complex > &	b,
		Tensor< double_complex > &	x
	)

gesv() [3/3]

template<typename T >

void madness::gesv	(	const Tensor< T > &	a,
		const Tensor< T > &	b,
		Tensor< T > &	x
	)

Solve Ax = b for general A using the LAPACK *gesv routines.

Solves symmetric or Hermitian eigenvalue problem - MATLAB syntax.

Solves linear equations.

A should be a square matrix (float, double, float_complex, double_complex) and b should be either a vector, or a matrix with each vector stored in a column (i.e., b[n,nrhs]).

If the LAPACK routine fails, it throws a TensorException with the LAPACK info as the value. Otherwise, it returns the solution(s). The input A and b are unchanged. There is no need to worry about Python/C/Fortran ordering issues. It will solve Ax=b as written.

Solves linear equations

References a, b, copy(), gesv_(), m, mask_info(), madness::Tensor< T >::ptr(), TENSOR_ASSERT, and transpose().

Referenced by madness::GFit< T, NDIM >::bsh_fit(), gesvp(), and test_gesv().

gesvp()

template<typename T >

void madness::gesvp	(	World &	world,
		const Tensor< T > &	a,
		const Tensor< T > &	b,
		Tensor< T > &	x
	)

References a, b, and gesv().

Referenced by madness::SCF::analyze_vectors(), madness::MolecularOrbitals< T, NDIM >::project_ao(), and madness::SCF::restart_aos().

get_atomic_data()

const AtomicData & madness::get_atomic_data

(

unsigned int

atomic_number

)

References atomic_data, and NUMBER_OF_ATOMS_IN_TABLE.

Referenced by madness::Atom::Atom(), madness::Molecule::Molecule(), madness::Molecule::add_atom(), madness::Molecule::print(), madness::AtomicBasisSet::print(), madness::AtomicBasisSet::print_all(), madness::AtomicBasisSet::print_anal(), and madness::Molecule::to_json().

get_charge_from_file()

double madness::get_charge_from_file	(	const std::string	filename,
		unsigned int	atype
	)

References debug, filename, MADNESS_EXCEPTION, name(), and symbol_to_atomic_number().

Referenced by madness::Molecule::get_structure().

get_impl()

template<typename T , std::size_t NDIM>

std::vector<std::shared_ptr<FunctionImpl<T,NDIM> > > madness::get_impl

(

const std::vector< Function< T, NDIM >> &

v

)

References f, and v.

Referenced by apply(), hartree_product(), matrix_inner(), madness::MacroTask< taskT >::prepare_output_records(), refine_to_common_level(), test_batch(), test_batch_1D(), and transform_reconstructed().

get_index_of_first_vector_argument()

template<typename tupleT , std::size_t I>

constexpr std::size_t madness::get_index_of_first_vector_argument ( )

constexpr

given a tuple return the index of the first argument that is a vector of Function<T,NDIM>

References I, and type().

get_index_of_second_vector_argument()

template<typename tupleT , std::size_t I>

constexpr std::size_t madness::get_index_of_second_vector_argument ( )

constexpr

given a tuple return the index of the second argument that is a vector of Function<T,NDIM>

get_mra_data_dir()

std::string madness::get_mra_data_dir

(

)

Referenced by madness::Derivative< T, NDIM >::set_ble1(), madness::Derivative< T, NDIM >::set_ble2(), madness::Derivative< T, NDIM >::set_bspline1(), madness::Derivative< T, NDIM >::set_bspline2(), and madness::Derivative< T, NDIM >::set_bspline3().

get_papi_measurement()

const long long* madness::get_papi_measurement ( )

inline

Referenced by print_stats().

get_size() [1/2]

template<typename T , std::size_t NDIM>

double madness::get_size

(

const Function< T, NDIM > &

f

)

References d(), f, and T().

get_size() [2/2]

template<typename T , std::size_t NDIM>

double madness::get_size	(	World &	world,
		const std::vector< Function< T, NDIM > > &	v
	)

References d(), T(), and v.

Referenced by madness::F12Potentials::F12Potentials(), madness::PNO::compute_fluctuation_matrix(), madness::F12Potentials::compute_fQc_integrals_ij(), madness::Nemo::compute_nemo_potentials(), madness::PNO::initialize_pairs(), madness::PNO::iterate_pairs_internal(), madness::TDHF::print_xfunctions(), madness::LowRankFunctionFactory< T, NDIM, LDIM >::project(), madness::LowRankFunction< T, NDIM, LDIM >::size(), madness::PNOPairs::update_meminfo(), and madness::PNO::update_pno().

ggev() [1/2]

template void madness::ggev	(	const Tensor< double > &	A,
		Tensor< double > &	B,
		Tensor< double > &	V,
		Tensor< double_complex > &	e
	)

ggev() [2/2]

template<typename T >

void madness::ggev	(	const Tensor< T > &	A,
		Tensor< T > &	B,
		Tensor< T > &	VR,
		Tensor< std::complex< T >> &	e
	)

Generalized real-non-symmetric or complex-non-Hermitian eigenproblem.

Solves non-symmetric or non-Hermitian generalized eigenvalue problem.

This from the LAPACK documentation

S/DGGEV computes all the eigenvalues, and optionally, the eigenvectors
of a real generalized non-symmetric-definite eigenproblem, of the form
A*x=(lambda)*B*x.

C/ZGGEV computes all the eigenvalues, and optionally, the eigenvectors
of a complex generalized non-Hermitian-definite eigenproblem, of the form
A*x=(lambda)*B*x.

Note on the eigenvalues: On exit, (ALPHAR(j) + ALPHAI(j)*i)/BETA(j), j=1,...,N, will be the generalized eigenvalues. If ALPHAI(j) is zero, then the j-th eigenvalue is real; if positive, then the j-th and (j+1)-st eigenvalues are a complex conjugate pair, with ALPHAI(j+1) negative.

Note: the quotients ALPHAR(j)/BETA(j) and ALPHAI(j)/BETA(j) may easily over- or underflow, and BETA(j) may even be zero. Thus, the user should avoid naively computing the ratio alpha/beta. However, ALPHAR and ALPHAI will be always less than and usually comparable with norm(A) in magnitude, and BETA always less than and usually comparable with norm(B).

Note on the eigenvectors: The right eigenvectors v(j) are stored one after another in the columns of VR, in the same order as their eigenvalues. If the j-th eigenvalue is real, then v(j) = VR(:,j), the j-th column of VR. If the j-th and (j+1)-th eigenvalues form a complex conjugate pair, then v(j) = VR(:,j)+i*VR(:,j+1) and v(j+1) = VR(:,j)-i*VR(:,j+1). Each eigenvector is scaled so the largest component has abs(real part)+abs(imag. part)=1.

References beta, copy(), e(), ggev_(), MADNESS_ASSERT, mask_info(), max, madness::Tensor< T >::ptr(), TENSOR_ASSERT, and transpose().

Referenced by ggevp().

ggevp()

template<typename T >

void madness::ggevp	(	World &	world,
		const Tensor< T > &	A,
		Tensor< T > &	B,
		Tensor< T > &	VR,
		Tensor< std::complex< T >> &	e
	)

References e(), and ggev().

GMRES()

template<typename T , typename real_type , typename scalar_type >

void madness::GMRES	(	const AbstractVectorSpace< T, real_type, scalar_type > &	space,
		const Operator< T > &	op,
		const T &	b,
		T &	x,
		int &	maxiters,
		real_type &	resid_thresh,
		real_type &	update_thresh,
		const bool	outp = false
	)

A GMRES solver routine for linear systems, .

Requires the vector space, the operator, A, the inhomogeneity b, an initial guess x, the maximum number of iterations, the convergence threshold for the solution residual, the convergence threshold for the norm of the update vector, and a flag for producing output.

The vector space object provides a standard way to compute the needed linear algebra operations (norm, inner product, etc.).

The printed output, if desired, shows iteration number, the residual, the norm of the change in solution vectors from one iteration to the next, and the effective rank of the GMRES matrix at that iteration.

On output, x has the computed solution, resid_thresh has its residual, update_thresh has the latest updatenorm, and maxiters has the number of iterations needed.

Parameters

[in]	space	The AbstractVectorSpace interface for the type
[in]	op	The Operator
[in]	b	The right-hand-side vector
[in,out]	x	Input: The initial guess for . Output: The computed solution for .
[in,out]	maxiters	Input: Maximum number of iterations to perform. Output: Actual iterations performed.
[in,out]	resid_thresh	Input: Convergence threshold for the residual . Output: The residual after the final iteration.
[in,out]	update_thresh	Input: Convergence threshold for the update vector . Output: The value after the final iteration.
[in]	outp	True if output to stdout is desired, false otherwise, defaults to false if unspecified.

References b, copy(), madness::AbstractVectorSpace< T, real_type, scalar_type >::destroy(), madness::AbstractVectorSpace< T, real_type, scalar_type >::gaxpy(), gelss(), imag(), madness::AbstractVectorSpace< T, real_type, scalar_type >::inner(), madness::AbstractVectorSpace< T, real_type, scalar_type >::norm(), madness::detail::norm(), madness::Tensor< T >::normf(), op(), madness::World::rank(), real(), madness::AbstractVectorSpace< T, real_type, scalar_type >::scale(), T(), V(), and madness::AbstractVectorSpace< T, real_type, scalar_type >::world.

Referenced by cplxfunc0(), cplxfunc1(), cplxfunc2(), cplxvec0(), cplxvec1(), cplxvec2(), main(), realfunc0(), realfunc1(), realfunc2(), realvec0(), realvec1(), and realvec2().

gprofexit()

void madness::gprofexit	(	int	id,
		int	nproc
	)

Rename gmon.out for each process by ordering process termination.

Invoke with id and nproc as rank and size in MPI::COMM_WORLD

References bufsize, and p().

grad()

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::grad	(	const Function< T, NDIM > &	f,
		bool	refine = false,
		bool	fence = true
	)

shorthand gradient operator

returns the differentiated function f in all NDIM directions

Parameters

[in]	f	the function on which the grad operator works on
[in]	refine	refinement before diff'ing makes the result more accurate
[in]	fence	fence after completion; if reconstruction is needed always fence

Returns

the vector \frac{\partial}{\partial x_i} f

References apply(), f, madness::WorldGopInterface::fence(), madness::World::gop, NDIM, and refine().

Referenced by madness::Znemo::compute_current_density(), compute_energy(), madness::OEP::compute_exchange_energy_vir(), compute_fock_matrix(), madness::NemoBase::compute_gradient(), madness::NemoBase::compute_kinetic_energy1(), madness::NemoBase::compute_kinetic_energy1a(), madness::Znemo::compute_kinetic_momentum(), madness::OEP::compute_Pauli_kinetic_density(), madness::F12Potentials::compute_regularized_fluctuation_matrix(), div(), grad_ble_one(), grad_ble_two(), grad_bpsline_two(), grad_bspline_one(), grad_bspline_three(), MolecularMaskBase::gradient(), madness::Nemo::gradient(), madness::Znemo::gradient(), madness::Nemo::make_sigma(), MolecularSurface::operator()(), MolecularVolumeMaskGrad::operator()(), madness::XCOperator< T, NDIM >::prep_xc_args(), madness::XCOperator< T, NDIM >::prep_xc_args_response(), rot(), test_rot(), and madness::Diamagnetic_potential_factor::test_vector_potentials().

grad_ble_one()

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::grad_ble_one	(	const Function< T, NDIM > &	f,
		bool	refine = false,
		bool	fence = true
	)

References apply(), f, madness::WorldGopInterface::fence(), madness::World::gop, grad(), NDIM, and refine().

Referenced by madness::XCOperator< T, NDIM >::prep_xc_args().

grad_ble_two()

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::grad_ble_two	(	const Function< T, NDIM > &	f,
		bool	refine = false,
		bool	fence = true
	)

References apply(), f, madness::WorldGopInterface::fence(), madness::World::gop, grad(), NDIM, and refine().

grad_bpsline_two()

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::grad_bpsline_two	(	const Function< T, NDIM > &	f,
		bool	refine = false,
		bool	fence = true
	)

References apply(), f, madness::WorldGopInterface::fence(), madness::World::gop, grad(), NDIM, and refine().

grad_bspline_one()

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::grad_bspline_one	(	const Function< T, NDIM > &	f,
		bool	refine = false,
		bool	fence = true
	)

References apply(), f, madness::WorldGopInterface::fence(), madness::World::gop, grad(), NDIM, and refine().

Referenced by madness::OEP::compute_Pauli_kinetic_density(), madness::Diamagnetic_potential_factor::compute_R_times_T_commutator_scalar_term_numerically(), and madness::XCOperator< T, NDIM >::prep_xc_args().

grad_bspline_three()

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::grad_bspline_three	(	const Function< T, NDIM > &	f,
		bool	refine = false,
		bool	fence = true
	)

References apply(), f, madness::WorldGopInterface::fence(), madness::World::gop, grad(), NDIM, and refine().

GradBSHOperator()

static std::vector< std::shared_ptr< SeparatedConvolution<double,3> > > madness::GradBSHOperator ( World &  world, double  mu, double  lo, double  eps, const BoundaryConditions< 3 > &  bc = FunctionDefaults<3>::get_bc(), int  k = FunctionDefaults<3>::get_k()  )

inlinestatic

Factory function generating operator for convolution with grad(bsh) in 3D.

Returns a 3-vector containing the convolution operator for the x, y, and z components of grad(bsh)

References BC_PERIODIC, madness::GFit< T, NDIM >::BSHFit(), c, d(), madness::BaseTensor::dim(), dir, fit(), madness::FunctionDefaults< NDIM >::get_cell_width(), k, lo, madness::Tensor< T >::max(), mu, madness::Tensor< T >::normf(), pi, madness::constants::pi, and pow().

Referenced by apply_BSH().

GradCoulombOperator()

static std::vector< std::shared_ptr< SeparatedConvolution<double,3> > > madness::GradCoulombOperator ( World &  world, double  lo, double  eps, const BoundaryConditions< 3 > &  bc = FunctionDefaults<3>::get_bc(), int  k = FunctionDefaults<3>::get_k()  )

inlinestatic

Factory function generating operator for convolution with grad(1/r) in 3D.

Returns a 3-vector containing the convolution operator for the x, y, and z components of grad(1/r)

References BC_PERIODIC, c, madness::GFit< T, NDIM >::CoulombFit(), d(), madness::BaseTensor::dim(), dir, fit(), madness::FunctionDefaults< NDIM >::get_cell_width(), k, lo, madness::Tensor< T >::max(), mu, madness::Tensor< T >::normf(), pi, madness::constants::pi, and pow().

Referenced by testgradG().

gradient_operator()

template<typename T , std::size_t NDIM>

std::vector< std::shared_ptr< Derivative<T,NDIM> > > madness::gradient_operator	(	World &	world,
		const BoundaryConditions< NDIM > &	bc = FunctionDefaults<NDIM>::get_bc(),
		int	k = FunctionDefaults<NDIM>::get_k()
	)

Convenience function returning vector of derivative operators implementing grad ( )

This will only work for BC_ZERO, BC_PERIODIC, BC_FREE and BC_ZERONEUMANN since we are not passing in any boundary functions.

References BC_DIRICHLET, BC_NEUMANN, d(), k, MADNESS_CHECK, and NDIM.

GradSlaterOperator()

static std::vector< std::shared_ptr< SeparatedConvolution<double,3> > > madness::GradSlaterOperator ( World &  world, double  gamma, double  lo, double  eps, const BoundaryConditions< 3 > &  bc = FunctionDefaults<3>::get_bc(), int  k = FunctionDefaults<3>::get_k()  )

inlinestatic

Factory function generating operator for convolution with grad(e^{-\gamma*r}) in 3D.

Returns a 3-vector containing the convolution operator for the x, y, and z components of grad(e^{-\gamma*r}) maybe move to madness library (operator.h) at some point

References BC_PERIODIC, c, d(), madness::BaseTensor::dim(), dir, fit(), madness::FunctionDefaults< NDIM >::get_cell_width(), k, lo, madness::Tensor< T >::max(), mu, madness::Tensor< T >::normf(), pi, madness::constants::pi, pow(), and madness::GFit< T, NDIM >::SlaterFit().

Referenced by madness::F12Potentials::F12Potentials().

hartree_product() [1/3]

template<typename T , std::size_t KDIM, std::size_t LDIM>

Function<T,KDIM+LDIM> madness::hartree_product	(	const Function< T, KDIM > &	left2,
		const Function< T, LDIM > &	right2
	)

Performs a Hartree product on the two given low-dimensional functions.

References hartree_product().

hartree_product() [2/3]

template<typename T , std::size_t KDIM, std::size_t LDIM, typename opT >

Function<T,KDIM+LDIM> madness::hartree_product	(	const Function< T, KDIM > &	left2,
		const Function< T, LDIM > &	right2,
		const opT &	op
	)

Performs a Hartree product on the two given low-dimensional functions.

References madness::Function< T, NDIM >::do_hartree_product(), madness::FunctionFactory< T, NDIM >::empty(), madness::WorldGopInterface::fence(), madness::Function< T, NDIM >::get_impl(), madness::FunctionDefaults< NDIM >::get_thresh(), madness::World::gop, madness::Function< T, NDIM >::k(), madness::FunctionFactory< T, NDIM >::k(), madness::Function< T, NDIM >::make_nonstandard(), op(), print(), madness::World::rank(), madness::Function< T, NDIM >::standard(), thresh, madness::FunctionFactory< T, NDIM >::thresh(), and madness::Function< T, NDIM >::world().

hartree_product() [3/3]

template<typename T , std::size_t KDIM, std::size_t LDIM>

Function<T,KDIM+LDIM> madness::hartree_product	(	const std::vector< Function< T, KDIM >> &	left,
		const std::vector< Function< T, LDIM >> &	right
	)

Performs a Hartree/outer product on the two given low-dimensional function vectors.

Returns

result(x,y) = \sum_i f_i(x) g_i(y)

References change_tree_state(), madness::Function< T, NDIM >::do_hartree_product(), madness::FunctionFactory< T, NDIM >::empty(), get_impl(), madness::FunctionDefaults< NDIM >::get_thresh(), madness::Function< T, NDIM >::k(), madness::FunctionFactory< T, NDIM >::k(), MADNESS_CHECK_THROW, nonstandard_with_leaves, madness::Function< T, NDIM >::size(), thresh, madness::FunctionFactory< T, NDIM >::thresh(), and madness::Function< T, NDIM >::world().

Referenced by hartree_product(), main(), madness::StrongOrthogonalityProjector< T, NDIM >::operator()(), madness::Projector< T, NDIM >::operator()(), madness::LowRankFunction< T, NDIM, LDIM >::reconstruct(), test(), test_adaptive_tree(), test_add(), test_compress(), test_convolution(), test_exchange(), test_hartree_product(), test_inner(), test_partial_inner(), and test_recursive_application().

hash_combine()

template<class T >

void madness::hash_combine ( hashT &  seed, const T &  v  )

inline

Combine hash values.

This function uses the standard hash function.

Template Parameters

T	The type to hash

Parameters

[in,out]	seed	The initial hash seed value
[in]	v	The value to be hashed

References madness::detail::combine_hash(), and v.

Referenced by Key::Key(), madness::Recordlist< keyT >::compute_record(), madness::GaussianConvolution1DCache< Q >::get(), madness::CC_vecfunction::hash(), madness::CCPair::hash(), madness::Atom::hash(), madness::Molecule::hash(), madness::TwoBodyFunctionPureComponent< T, NDIM >::hash(), madness::TwoBodyFunctionSeparatedComponent< T, NDIM >::hash(), hash_value(), and madness::Key< NDIM >::rehash().

hash_range() [1/7]

template<class T >

hashT madness::hash_range ( const T *  t, std::size_t  n  )

inline

Combine the hash values of a pointer range.

Template Parameters

T	The type to be hashed

Parameters

t	A pointer to the beginning of the range to be hashed
n	The number of elements to hashed

Returns

The hashed pointer range value

References hash_range().

hash_range() [2/7]

template<class T , std::size_t n>

hashT madness::hash_range ( const T(&)  t[n] )

inline

Combine the hash values of a C-style array.

Template Parameters

T	The type to be hashed
n	The size of the C-style array

Parameters

[in]

t

The array to be hashed

Returns

The hashed array value

References hash_range().

hash_range() [3/7]

template<class T >

std::enable_if<std::is_fundamental<T>::value >::type madness::hash_range ( hashT &  seed, const T *  t, std::size_t  n  )

inline

Combine the hash values of a pointer range.

Template Parameters

T	The type to be hashed

Parameters

[in,out]	seed	The initial hash seed value
[in]	t	A pointer to the beginning of the range to be hashed
[in]	n	The number of elements to hashed

Note

May use heavily optimized hashword when n * sizeof(T) is multiple of sizeof(uint32_t) and presumably correctly aligned.

References hashlittle(), hashword(), and T().

hash_range() [4/7]

template<class T >

std::enable_if<!std::is_fundamental<T>::value >::type madness::hash_range ( hashT &  seed, const T *  t, std::size_t  n  )

inline

Combine the hash values of a pointer range.

Template Parameters

T	The type to be hashed

Parameters

[in,out]	seed	The initial hash seed value
[in]	t	A pointer to the beginning of the range to be hashed
[in]	n	The number of elements to hashed

References hash_range().

hash_range() [5/7]

template<class T , std::size_t n>

void madness::hash_range ( hashT &  seed, const T(&)  t[n]  )

inline

Combine the hash values of a C-style array.

Template Parameters

T	The type to be hashed
n	The size of the C-style array

Parameters

[in,out]	seed	The initial hash seed value
[in]	t	The array to be hashed

Note

This function uses std::hash

References hash_range().

hash_range() [6/7]

template<class It >

void madness::hash_range ( hashT &  seed, It  first, It  last  )

inline

Template Parameters

It	the iterator type

Parameters

[in,out]	seed	The initial hash seed value
[in]	first	The first element of the iterator range to be hashed
[in]	last	The end of the iterator range to be hashed

References madness::detail::combine_hash().

Referenced by madness::Recordlist< keyT >::compute_record(), madness::Molecule::hash(), madness::QCCalculationParametersBase::hash(), hash_range(), and hash_value().

hash_range() [7/7]

template<class It >

hashT madness::hash_range ( It  first, It  last  )

inline

Combine the hash values of an iterator range.

Template Parameters

It	the iterator type

Parameters

[in]	first	The first element of the iterator range to be hashed
[in]	last	The end of the iterator range to be hashed

Returns

The hashed iterator range

References hash_range().

hash_value() [1/7]

template<typename T , std::size_t N>

madness::hashT madness::hash_value

(

const std::array< T, N > &

a

)

Hash std::array with madness hash.

Template Parameters

T	The type of data stored in the array.
N	The size of the array.

Parameters

[in]

a

The array.

Returns

The hash.

References a, hash_range(), and N.

Referenced by Key::Key(), madness::Recordlist< keyT >::compute_record(), madness::GaussianConvolution1DCache< Q >::get(), madness::CC_vecfunction::hash(), madness::CCPair::hash(), madness::Atom::hash(), madness::QCParameter::hash(), madness::Vector< T, N >::hash(), madness::TwoBodyFunctionPureComponent< T, NDIM >::hash(), madness::TwoBodyFunctionSeparatedComponent< T, NDIM >::hash(), std::hash_value(), hash_value(), madness::Hash< T >::operator()(), and madness::Key< NDIM >::rehash().

hash_value() [2/7]

template<typename T >

hashT madness::hash_value ( const std::basic_string< T > &  t )

inline

Hash a std::basic_string.

Template Parameters

T	The character type

Parameters

t	The string to hash

Returns

The hashed value of the string

References hash_range().

hash_value() [3/7]

template<typename T , typename R >

hashT madness::hash_value ( const std::pair< T, R > &  t )

inline

Hash a std::pair.

Parameters

t	a pair to hash

Returns

The hashed value of t

References hash_combine(), and hash_value().

hash_value() [4/7]

template<typename T >

auto madness::hash_value ( const T &  t )

inline

Hash a class object.

Template Parameters

T	The class type

Parameters

t	The object to hash

Returns

t.hash()

hash_value() [5/7]

template<typename T >

hashT madness::hash_value ( const T *  t )

inline

Hash a pointer address.

Template Parameters

T	The pointer type

Parameters

t	The pointer to be hashed

Returns

The hashed value

References hash_value().

hash_value() [6/7]

template<class T >

std::enable_if<std::is_fundamental<T>::value && ((sizeof(T)%sizeof(uint32_t)) == 0), hashT>::type madness::hash_value ( const T  t )

inline

Hash a single fundamental object.

Template Parameters

T	The fundamental type

Parameters

t	The object to hash

Returns

The hashed value

Note

Use heavily optimized hashword when sizeof(T) is multiple of sizeof(uint32_t) and presumably correctly aligned.

References hashword(), T(), and u().

hash_value() [7/7]

template<class T >

std::enable_if<std::is_fundamental<T>::value && ((sizeof(T)%sizeof(uint32_t)) != 0), hashT>::type madness::hash_value ( const T  t )

inline

Hash a single fundamental object.

Template Parameters

T	The fundamental type

Parameters

t	The object to hash

Returns

The hashed value

References hashlittle(), T(), and u().

hereig() [1/5]

template<>

void madness::hereig	(	char	jobz,
		char	uplo,
		integer	n,
		complex_real4 *	A,
		integer	lda,
		real4 *	W
	)

References cheev_(), LINALG_ASSERT, max, and madness::cblas::to_cptr().

hereig() [2/5]

template<>

void madness::hereig	(	char	jobz,
		char	uplo,
		integer	n,
		complex_real8 *	A,
		integer	lda,
		real8 *	W
	)

References LINALG_ASSERT, max, madness::cblas::to_zptr(), and zheev_().

hereig() [3/5]

template<>

void madness::hereig	(	char	jobz,
		char	uplo,
		integer	n,
		real4 *	A,
		integer	lda,
		real4 *	W
	)

References LINALG_ASSERT, and ssyev_().

hereig() [4/5]

template<>

void madness::hereig	(	char	jobz,
		char	uplo,
		integer	n,
		real8 *	A,
		integer	lda,
		real8 *	W
	)

References dsyev_(), and LINALG_ASSERT.

hereig() [5/5]

template<typename T >

void madness::hereig	(	char	jobz,
		char	uplo,
		integer	n,
		T *	A,
		integer	lda,
		typename detail::real_type< T >::type *	W
	)

Solve the EVP via LAPACK.

hereig_gen() [1/5]

template<>

void madness::hereig_gen	(	integer	itype,
		char	jobz,
		char	uplo,
		integer	n,
		complex_real4 *	A,
		integer	lda,
		complex_real4 *	B,
		integer	ldb,
		real4 *	W
	)

References chegv_(), LINALG_ASSERT, max, and madness::cblas::to_cptr().

hereig_gen() [2/5]

template<>

void madness::hereig_gen	(	integer	itype,
		char	jobz,
		char	uplo,
		integer	n,
		complex_real8 *	A,
		integer	lda,
		complex_real8 *	B,
		integer	ldb,
		real8 *	W
	)

References LINALG_ASSERT, max, madness::cblas::to_zptr(), and zhegv_().

hereig_gen() [3/5]

template<>

void madness::hereig_gen	(	integer	itype,
		char	jobz,
		char	uplo,
		integer	n,
		real4 *	A,
		integer	lda,
		real4 *	B,
		integer	ldb,
		real4 *	W
	)

References LINALG_ASSERT, and ssygv_().

hereig_gen() [4/5]

template<>

void madness::hereig_gen	(	integer	itype,
		char	jobz,
		char	uplo,
		integer	n,
		real8 *	A,
		integer	lda,
		real8 *	B,
		integer	ldb,
		real8 *	W
	)

References dsygv_(), and LINALG_ASSERT.

hereig_gen() [5/5]

template<typename T >

void madness::hereig_gen	(	integer	itype,
		char	jobz,
		char	uplo,
		integer	n,
		T *	A,
		integer	lda,
		T *	B,
		integer	ldb,
		typename detail::real_type< T >::type *	W
	)

Solve the Generalized EVP via LAPACK.

imag() [1/4]

template<std::size_t NDIM>

Function<double,NDIM> madness::imag	(	const Function< double_complex, NDIM > &	z,
		bool	fence = true
	)

Returns a new function that is the imaginary part of the input.

References unary_op_coeffs().

imag() [2/4]

template<typename Q , int NDIM>

Function<typename TensorTypeData<Q>::scalar_type,NDIM> madness::imag

(

const Function< Q, NDIM > &

func

)

References func(), and unary_op_coeffs().

imag() [3/4]

template<typename T , std::size_t NDIM>

std::vector<Function<typename Tensor<T>::scalar_type,NDIM> > madness::imag	(	const std::vector< Function< T, NDIM > > &	v,
		bool	fence = true
	)

return the imaginary parts of the vector's function (if complex)

References imag(), NDIM, and v.

imag() [4/4]

static double madness::imag ( double  x )

inline

Referenced by madness::Znemo::analyze(), madness::projector_irrep::apply_symmetry_operators(), madness::Znemo::compute_current_density(), madness::Znemo::compute_energy(), madness::Znemo::compute_kinetic_momentum(), compute_madelung_energy(), EwaldNuclearPotentialFunctor::do_G_sum_v2(), madness::BSHApply< T, NDIM >::eps_in_green(), GMRES(), imag(), madness::VectorSpace< T, NDIM >::norm(), madness::CCPairFunction< T, NDIM >::norm2(), madness::detail::imagop< NDIM >::operator()(), madness::imag_op< Q, NDIM >::operator()(), Spinor::plot(), plot_line_print_value(), plotvtk_data(), Spinor::print_norms(), madness::Znemo::save_orbitals(), tensor_ximag(), and test_G_R_vectors().

impl2function()

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::impl2function

(

const std::vector< std::shared_ptr< FunctionImpl< T, NDIM >>>

vimpl

)

References set_impl(), and v.

Referenced by madness::CompositeFunctorInterface< T, NDIM, MDIM >::make_redundant().

init_tensor_lapack()

void madness::init_tensor_lapack

(

)

World/MRA initialization calls this before going multithreaded due to static data in dlamch.

References dlamch_(), e(), and slamch_().

Referenced by startup().

initialize() [1/5]

World& madness::initialize	(	int &	argc,
		char **&	argv,
		bool	quiet = false
	)

Initializes the MADNESS runtime with default MPI communicator and default number of compute threads Call this once at the very top of your main program to initialize the MADNESS runtime. This function should be called instead of MPI_Init() or MPI_Init_thread().

Parameters

[in,out]	argc	Application argument count.
[in,out]	argv	Application argument values.
[in]	quiet	If false, will announce to std::cout on rank 0 when the runtime has been initialized.

Returns

A reference to the default World, which is constructed with MPI_COMM_WORLD.

Note

The default number of compute threads is read from the environment variable MAD_NUM_THREADS; if the environment variable is not given the number of compute thread is set to the system-defined number of hardware threads.

References SafeMPI::COMM_WORLD, and quiet().

Referenced by data< T, NDIM >::get_ccpairfunctions(), data< T, NDIM >::get_functions(), initialize(), main(), main(), TEST_CASE(), test_G_R_vectors(), test_gaussian_num_coeffs(), test_nuclear_energy(), test_nuclear_potential(), test_nuclear_potential2(), test_nuclear_potential3(), test_nuclear_potential_big_unit_cell(), and testNavierStokes().

initialize() [2/5]

World& madness::initialize	(	int &	argc,
		char **&	argv,
		const MPI_Comm &	comm,
		int	nthread,
		bool	quiet = false
	)

Initializes the MADNESS runtime with the given MPI communicator and the given number of compute threads Call this once at the very top of your main program to initialize the MADNESS runtime. This function should be called instead of MPI_Init() or MPI_Init_thread().

Parameters

[in,out]	argc	Application argument count.
[in,out]	argv	Application argument values.
	comm	The MPI communicator that should be used to construct the World object.
[in]	nthread	The total number of compute threads to create (the main thread is counted among the compute threads) if a negative value is given then the default number of compute threads will be used.
[in]	quiet	If false, will announce to std::cout on rank 0 when the runtime has been initialized.

Returns

A reference to the World constructed with comm.

Note

The default number of compute threads is read from the environment variable MAD_NUM_THREADS; if the environment variable is not given the number of compute thread is set to the system-defined number of hardware threads.

References initialize(), and quiet().

initialize() [3/5]

World & madness::initialize	(	int &	argc,
		char **&	argv,
		const SafeMPI::Intracomm &	comm,
		bool	quiet = false
	)

Initializes the MADNESS runtime with the given MPI communicator and the default number of compute threads Call this once at the very top of your main program to initialize the MADNESS runtime. This function should be called instead of MPI_Init() or MPI_Init_thread().

Parameters

[in,out]	argc	Application argument count.
[in,out]	argv	Application argument values.
	comm	The communicator that should be used to construct the World object.
[in]	quiet	If false, will announce to std::cout on rank 0 when the runtime has been initialized.

Returns

A reference to the World constructed with comm.

Note

The default number of compute threads is read from the environment variable MAD_NUM_THREADS; if the environment variable is not given the number of compute thread is set to the system-defined number of hardware threads.

References initialize(), and quiet().

initialize() [4/5]

World& madness::initialize	(	int &	argc,
		char **&	argv,
		const SafeMPI::Intracomm &	comm,
		int	nthread,
		bool	quiet = false
	)

Initializes the MADNESS runtime with the given MPI communicator and the given number of compute threads Call this once at the very top of your main program to initialize the MADNESS runtime. This function should be called instead of MPI_Init() or MPI_Init_thread().

Parameters

[in,out]	argc	Application argument count.
[in,out]	argv	Application argument values.
	comm	The communicator that should be used to construct the World object.
[in]	nthread	The total number of compute threads to create (the main thread is counted among the compute threads); if a negative value is given then the default number of compute threads will be used.
[in]	quiet	If false, will announce to std::cout on rank 0 when the runtime has been initialized.

Returns

A reference to the World constructed with comm.

Note

The default number of compute threads is read from the environment variable MAD_NUM_THREADS; if the environment variable is not given the number of compute thread is set to the system-defined number of hardware threads.

initialize() [5/5]

World& madness::initialize	(	int &	argc,
		char **&	argv,
		int	nthread,
		bool	quiet = false
	)

Initializes the MADNESS runtime with default MPI communicator and the given number of compute threads Call this once at the very top of your main program to initialize the MADNESS runtime. This function should be called instead of MPI_Init() or MPI_Init_thread().

Parameters

[in,out]	argc	Application argument count.
[in,out]	argv	Application argument values.
[in]	nthread	The total number of compute threads to create (the main thread is counted among the compute threads) if a negative value is given then the default number of compute threads will be used.
[in]	quiet	If false, will announce to std::cout on rank 0 when the runtime has been initialized.

Returns

A reference to the default World, which is constructed with MPI_COMM_WORLD.

Note

The default number of compute threads is read from the environment variable MAD_NUM_THREADS; if the environment variable is not given the number of compute thread is set to the system-defined number of hardware threads.

References SafeMPI::COMM_WORLD, initialize(), and quiet().

initialize_legendre_stuff()

void madness::initialize_legendre_stuff

(

)

Call this single threaded to initialize static data (used read only by multiple threads)

References nn1, and phi_norms.

Referenced by startup().

initialize_papi()

void madness::initialize_papi ( )

inline

initialized()

bool madness::initialized

(

)

Check if the MADNESS runtime has been initialized (and not subsequently finalized).

Returns

true if madness::initialize had been called more recently than madness::finalize, false otherwise.

Referenced by madness::WorldObject< Derived >::~WorldObject(), madness::archive::archive_initialize_type_names(), madness::FunctionDefaults< NDIM >::get_pmap(), SafeMPI::Is_initialized(), and wall_time().

inner() [1/22]

template<typename T , std::size_t NDIM>

Function<T,CCPairFunction<T,NDIM>::LDIM> madness::inner	(	const CCPairFunction< T, NDIM > &	c,
		const Function< T, CCPairFunction< T, NDIM >::LDIM > &	f,
		const std::array< int, CCPairFunction< T, NDIM >::LDIM > &	v1,
		const std::array< int, CCPairFunction< T, NDIM >::LDIM > &	v2
	)

References c, and f.

inner() [2/22]

template<typename T , std::size_t NDIM>

Function<T,CCPairFunction<T,NDIM>::LDIM> madness::inner	(	const CCPairFunction< T, NDIM > &	c,
		const Function< T, CCPairFunction< T, NDIM >::LDIM > &	f,
		const std::tuple< int, int, int >	v1,
		const std::tuple< int, int, int >	v2
	)

References c, and f.

inner() [3/22]

template<typename T , std::size_t NDIM>

CCPairFunction<T,NDIM> madness::inner	(	const CCPairFunction< T, NDIM > &	c1,
		const CCPairFunction< T, NDIM > &	c2,
		const std::array< int, CCPairFunction< T, NDIM >::LDIM > &	v1,
		const std::array< int, CCPairFunction< T, NDIM >::LDIM > &	v2
	)

References madness::CCPairFunction< T, NDIM >::partial_inner().

inner() [4/22]

template<typename T , std::size_t NDIM>

CCPairFunction<T,NDIM> madness::inner	(	const CCPairFunction< T, NDIM > &	c1,
		const CCPairFunction< T, NDIM > &	c2,
		const std::tuple< int, int, int >	v1,
		const std::tuple< int, int, int >	v2
	)

References madness::CCPairFunction< T, NDIM >::partial_inner().

inner() [5/22]

template<typename T , std::size_t LDIM, typename R , std::size_t KDIM>

Function<TENSOR_RESULT_TYPE(T,R),KDIM+LDIM-2> madness::inner	(	const Function< T, LDIM > &	f,
		const Function< R, KDIM > &	g,
		const std::tuple< int >	v1,
		const std::tuple< int >	v2
	)

Computes the partial scalar/inner product between two functions, returns a low-dim function.

syntax similar to the inner product in tensor.h e.g result=inner<3>(f,g),{0},{1}) : r(x,y) = int f(x1,x) g(y,x1) dx1

References f, g, and innerXX().

inner() [6/22]

template<typename T , std::size_t LDIM, typename R , std::size_t KDIM>

Function<TENSOR_RESULT_TYPE(T,R),KDIM+LDIM-4> madness::inner	(	const Function< T, LDIM > &	f,
		const Function< R, KDIM > &	g,
		const std::tuple< int, int >	v1,
		const std::tuple< int, int >	v2
	)

Computes the partial scalar/inner product between two functions, returns a low-dim function.

syntax similar to the inner product in tensor.h e.g result=inner<3>(f,g),{0,1},{1,2}) : r(y) = int f(x1,x2) g(y,x1,x2) dx1 dx2

References f, g, and innerXX().

inner() [7/22]

template<typename T , std::size_t LDIM, typename R , std::size_t KDIM>

Function<TENSOR_RESULT_TYPE(T,R),KDIM+LDIM-6> madness::inner	(	const Function< T, LDIM > &	f,
		const Function< R, KDIM > &	g,
		const std::tuple< int, int, int >	v1,
		const std::tuple< int, int, int >	v2
	)

Computes the partial scalar/inner product between two functions, returns a low-dim function.

syntax similar to the inner product in tensor.h e.g result=inner<3>(f,g),{1},{2}) : r(x,y,z) = int f(x,x1) g(y,z,x1) dx1

References f, g, and innerXX().

inner() [8/22]

template<typename T , std::size_t NDIM, std::size_t PDIM>

LowRankFunction<T,NDIM> madness::inner	(	const Function< T, NDIM > &	f1,
		const LowRankFunction< T, NDIM > &	f2,
		const particle< PDIM >	p1,
		const particle< PDIM >	p2
	)

lrf(1,3) = inner(full(1,2), lrf(2,3))

inner product: LowRankFunction lrf; Function f, g; double d lrf(1,3) = inner(lrf(1,2), lrf(2,3)) lrf(1,3) = inner(lrf(1,2), f(2,3)) g(1) = inner(lrf(1,2), f(2)) d = inner(lrf(1,2), f(1,2)) d = inner(lrf(1,2), lrf(1,2))

Parameters

[in]	f1	the first function
[in]	f2	the second function
[in]	p1	the integration variable of the first function
[in]	p2	the integration variable of the second function

References f1, f2, inner(), and swap().

inner() [9/22]

template<typename T , std::size_t NDIM>

double madness::inner	(	const LowRankFunction< T, NDIM > &	a,
		const LowRankFunction< T, NDIM > &	b
	)

References a, b, and matrix_inner().

inner() [10/22]

template<typename T , std::size_t NDIM, std::size_t PDIM>

LowRankFunction<T,NDIM> madness::inner	(	const LowRankFunction< T, NDIM > &	f1,
		const Function< T, NDIM > &	f2,
		const particle< PDIM >	p1,
		const particle< PDIM >	p2
	)

lrf(1,3) = inner(lrf(1,2), full(2,3))

Parameters

[in]	f1	the first function
[in]	f2	the second function
[in]	p1	the integration variable of the first function
[in]	p2	the integration variable of the second function

References change_tree_state(), f1, f2, madness::LowRankFunction< T, NDIM, LDIM >::g, madness::particle< PDIM >::get_array(), madness::LowRankFunction< T, NDIM, LDIM >::h, madness::particle< PDIM >::is_first(), madness::particle< PDIM >::is_last(), NDIM, and reconstructed.

inner() [11/22]

template<typename T , std::size_t NDIM, std::size_t PDIM>

Function<T,NDIM> madness::inner	(	const LowRankFunction< T, NDIM > &	f1,
		const Function< T, PDIM > &	f2,
		const particle< PDIM >	p1,
		const particle< PDIM >	p2 = particle<PDIM>::particle1()
	)

f(1) = inner(lrf(1,2), f(2))

Parameters

[in]	f1	the first function
[in]	vf	the second function
[in]	p1	the integration variable of the first function
[in]	p2	the integration variable of the second function, dummy variable for consistent notation

References f1, f2, and inner().

inner() [12/22]

template<typename T , std::size_t NDIM, std::size_t PDIM>

LowRankFunction<T,NDIM> madness::inner	(	const LowRankFunction< T, NDIM > &	f1,
		const LowRankFunction< T, NDIM > &	f2,
		const particle< PDIM >	p1,
		const particle< PDIM >	p2
	)

lrf(1,3) = inner(lrf(1,2), lrf(2,3))

Parameters

[in]	f1	the first function
[in]	f2	the second function
[in]	p1	the integration variable of the first function
[in]	p2	the integration variable of the second function

References madness::particle< PDIM >::complement(), copy(), f1, f2, matrix_inner(), NDIM, and transform().

inner() [13/22]

template<typename T , std::size_t NDIM, std::size_t PDIM>

std::vector<Function<T,NDIM-PDIM> > madness::inner	(	const LowRankFunction< T, NDIM > &	f1,
		const std::vector< Function< T, PDIM >> &	vf,
		const particle< PDIM >	p1,
		const particle< PDIM >	p2 = particle<PDIM>::particle1()
	)

f(1) = inner(lrf(1,2), f(2))

Parameters

[in]	f1	the first function
[in]	vf	vector of the second functions
[in]	p1	the integration variable of the first function
[in]	p2	the integration variable of the second function, dummy variable for consistent notation

References madness::particle< PDIM >::complement(), f1, MADNESS_CHECK, matrix_inner(), NDIM, and transform().

inner() [14/22]

double madness::inner	(	const std::valarray< double > &	bra,
		const std::valarray< double > &	ket
	)

inner product for std::valarray

inner() [15/22]

template<typename T , std::size_t NDIM>

std::vector<CCPairFunction<T,NDIM> > madness::inner	(	const std::vector< CCPairFunction< T, NDIM >> &	c1,
		const std::vector< CCPairFunction< T, NDIM >> &	c2,
		const std::array< int, CCPairFunction< T, NDIM >::LDIM > &	v1,
		const std::array< int, CCPairFunction< T, NDIM >::LDIM > &	v2
	)

References inner(), and print().

inner() [16/22]

template<typename T , std::size_t NDIM>

std::vector<CCPairFunction<T,NDIM> > madness::inner	(	const std::vector< CCPairFunction< T, NDIM >> &	c1,
		const std::vector< CCPairFunction< T, NDIM >> &	c2,
		const std::tuple< int, int, int >	v1,
		const std::tuple< int, int, int >	v2
	)

References inner().

inner() [17/22]

template<typename T , std::size_t N>

T madness::inner	(	const Vector< T, N > &	l,
		const Vector< T, N > &	r
	)

compute the inner product two Vectors.

Do an inner product of l and r and return the result in a new Vector.

Template Parameters

T	The Vector element type.
N	The Vector size.

Parameters

[in]	l	The left-hand Vector.
[in]	r	The right-hand Vector.

Returns

the inner product, where result==\sum_i(l[i]*r[i]).

References N, and T().

inner() [18/22]

auto madness::inner	(	const X_space &	A,
		const X_space &	B
	)		-> Tensor<double>

Computes the matrix elements between two response spaces.

cij=inner(ai,bj)

Parameters

A
B

Returns

Tensor<double>

inner() [19/22]

return f madness::inner

(

g

)

inner() [20/22]

double madness::inner ( response_space &  a, response_space &  b  )

inline

References a, b, and MADNESS_ASSERT.

Referenced by madness::Znemo::analyze(), madness::SCF::analyze_vectors(), madness::Solver< T, NDIM >::apply_hf_exchange3(), madness::Solver< T, NDIM >::apply_hf_exchange4(), madness::Solver< T, NDIM >::apply_potential(), madness::SCF::apply_potential(), madness::projector_irrep::apply_symmetry_operators(), madness::Diamagnetic_potential_factor::bare_diamagnetic_potential(), bend(), Calculation::calc_optimal_coeffs(), madness::HartreeFock< T, NDIM >::calculate_coulomb_energy(), madness::HartreeFock< T, NDIM >::calculate_exchange_energy(), madness::HartreeFock< T, NDIM >::calculate_ke_sp(), madness::DFT< T, NDIM >::calculate_ke_sp(), madness::Solver< T, NDIM >::calculate_kinetic_energy(), madness::DFT< T, NDIM >::calculate_tot_pe_sp(), madness::RandomizedMatrixDecomposition< T >::check_range(), madness::SRConf< T >::check_right_orthonormality(), madness::OEP::compute_and_print_final_energies(), madness::MolecularOrbitals< T, NDIM >::compute_center(), madness::guessfactory::compute_centroids(), madness::PNO::compute_cispd_correction_gs(), madness::PNO::compute_cispd_f12_correction_es(), madness::PNO::compute_cispd_f12_correction_gs(), madness::F12Potentials::compute_cispd_f12_energies(), madness::Localizer::compute_core_valence_separation_transformation_matrix(), madness::OEP::compute_E_first(), madness::Znemo::compute_energy(), madness::OEP::compute_energy(), compute_energy(), madness::Nemo::compute_energy_regularized(), compute_energy_simple(), compute_energy_with_U(), madness::OEP::compute_exchange_energy_conv(), madness::OEP::compute_exchange_energy_vir(), madness::OEP::compute_fock_diagonal_elements(), compute_fock_matrix(), madness::Zcis::compute_fock_pt(), madness::F12Potentials::compute_fQc_integrals_ij(), madness::F12Potentials::compute_fQg_integral(), madness::F12Potentials::compute_fQg_integrals(), madness::F12Potentials::compute_fQU_integrals(), compute_frequencies(), madness::MP2::compute_gQf(), madness::Nemo::compute_IR_intensities(), madness::NemoBase::compute_kinetic_energy(), madness::NemoBase::compute_kinetic_energy2(), madness::Znemo::compute_kinetic_momentum(), madness::Znemo::compute_linear_moment(), madness::Znemo::compute_magnetic_potential_expectation(), madness::MP3::compute_mp3_cd(), madness::MP3::compute_mp3_ef(), madness::MP3::compute_mp3_ef_low_scaling(), madness::MP3::compute_mp3_ef_with_permutational_symmetry(), madness::MP3::compute_mp3_ghij(), madness::MP3::compute_mp3_ghij_fast(), madness::MP3::compute_mp3_klmn(), madness::MP3::compute_mp3_klmn_fast(), madness::Diamagnetic_potential_factor::compute_nabla_R_div_R(), compute_R2f2_psi(), madness::MolecularOptimizer::compute_reduced_mass(), compute_reduced_mass(), madness::Znemo::compute_residuals(), madness::Zcis::compute_residuals(), madness::SVDTensor< T >::compute_svd_from_range(), madness::Diamagnetic_potential_factor::compute_U2(), converge(), converge2s(), madness::PotentialManager::core_projection(), madness::PotentialManager::core_projector_derivative(), madness::Diamagnetic_potential_factor::custom_factor(), madness::Znemo::custom_guess(), madness::SCF::derivatives(), dnuclear_anchor_test(), madness::RandomizedMatrixDecomposition< T >::do_compute_range(), madness::Derivative< T, NDIM >::do_diff2b(), madness::Solver< T, NDIM >::do_rhs(), madness::Solver< T, NDIM >::do_rhs_simple(), doit(), dx2y2_func(), dxy_func(), dxz_func(), dyz_func(), dz2_func(), eigenvector_test(), energy(), madness::Diamagnetic_potential_factor::factor_with_phase(), fixphases(), madness::TensorTrain< T >::fusedim(), madness::SRConf< T >::general_transform(), general_transform(), madness::StrongOrthogonalityProjector< T, NDIM >::get_vectors_for_outer_product(), madness::Solver< T, NDIM >::gram_schmidt(), madness::Nemo::hessian(), QuasiNewton::hessian_update_bfgs(), madness::QuasiNewton::hessian_update_bfgs(), QuasiNewton::hessian_update_sr1(), madness::QuasiNewton::hessian_update_sr1(), madness::SCF::initial_guess(), data< T, NDIM >::initialize(), inner(), inner(), Fcwf::inner(), madness::CCPairFunction< T, NDIM >::inner_internal(), is_aligned(), is_centered_normal(), madness::Znemo::iterate(), iterate(), madness::Zcis::iterate(), iterate_excite(), iterate_ground(), madness::CC2::iterate_singles(), madness::TDHF::iterate_vectors(), iterate_xy(), madness::LowRankFunction< T, NDIM, LDIM >::l2error(), madness::Localizer::localize(), madness::Localizer::localize_boys(), madness::Localizer::localize_new(), main(), madness::TDHF::make_cis_matrix(), madness::TwoElectronInterface< T, NDIM >::make_coeff(), madness::Nemo::make_incomplete_hessian(), madness::Nemo::make_incomplete_hessian_response_part(), madness::TDHF::make_overlap_matrix(), madness::TDHF::make_perturbed_fock_matrix(), Calculation::make_reference(), madness::RandomizedMatrixDecomposition< T >::make_SVD_decaying_matrix(), madness::MP2::make_Uphi0(), madness::TDHF::make_virtuals(), madness::CCPairFunction< T, NDIM >::make_xy_u(), madness::EigSolver< T, NDIM >::matrix_element(), madness::Solver< T, NDIM >::matrix_exponential(), madness::Localizer::matrix_exponential(), matrix_exponential(), matrix_inner(), madness::AtomicBasisSet::modify_dmat_psp(), moments(), madness::MP3::mp3_test(), madness::EigSolver< T, NDIM >::multi_solve(), QuasiNewton::new_search_direction(), madness::QuasiNewton::new_search_direction(), madness::MolecularOptimizer::new_search_direction2(), Fcwf::norm2(), madness::LRFunctorF12< T, NDIM, LDIM >::norm2(), AnsatzBase::normalize(), madness::FunctionImpl< T, NDIM >::NScoeffs2values(), nuclear_anchor_test(), LProjector::operator()(), madness::R_times_arg_div_R::operator()(), madness::NuclearCorrelationFactor::U1_dot_U1_functor::operator()(), madness::harmonic_potential_boxed::operator()(), madness::spherical_box< NDIM >::operator()(), madness::Exchange< T, NDIM >::operator()(), madness::Coulomb< T, NDIM >::operator()(), madness::Nuclear< T, NDIM >::operator()(), madness::Lz< T, NDIM >::operator()(), madness::DNuclear< T, NDIM >::operator()(), madness::LocalPotentialOperator< T, NDIM >::operator()(), madness::FunctionImpl< T, NDIM >::project_out_op< LDIM >::operator()(), MicroTask1::operator()(), MatrixOperator::operator()(), madness::BSHApply< T, NDIM >::operator()(), MicroTask2::operator()(), madness::RandomizedMatrixDecomposition< T >::Y_former::operator()(), madness::LRFunctorF12< T, NDIM, LDIM >::operator()(), HO_function< NDIM >::operator()(), slater::operator()(), gaussian::operator()(), madness::LowRankFunction< T, NDIM, LDIM >::optimize(), madness::MolecularOptimizer::optimize_conjugate_gradients(), madness::MolecularOptimizer::optimize_quasi_newton(), ortho3(), ortho5(), MiniDFT::orthogonalize(), orthogonalize(), madness::Zcis::orthonormalize(), orthonormalize_fock(), orthonormalize_symmetric(), madness::TDHF::oscillator_strength_length(), madness::TDHF::oscillator_strength_velocity(), madness::FunctionImpl< T, NDIM >::partial_inner_contract(), madness::PNO::pno_compress(), print_info(), madness::EigSolver< T, NDIM >::print_matrix_elements(), print_stats(), madness::LowRankFunctionFactory< T, NDIM, LDIM >::project(), madness::CCPairFunction< T, NDIM >::project_out_decomposed(), projector_external_dof(), madness::MolecularOptimizer::projector_external_dof(), propagate(), px_func(), py_func(), pz_func(), Q3(), madness::Solver< T, NDIM >::Q3(), madness::SVDTensor< T >::recompute_from_range(), madness::SRConf< T >::reconstruct(), madness::TensorTrain< T >::reconstruct(), reconstruct_psi(), remove_external_dof(), madness::MolecularOptimizer::remove_external_dof(), madness::LowRankFunction< T, NDIM, LDIM >::reorthonormalize(), madness::Convolution1D< Q >::rnlij(), madness::Molecule::rotate(), s_func(), madness::OEP::selftest(), madness::Localizer::separate_core_valence(), show_norms(), madness::EigSolver< T, NDIM >::solve(), madness::SCF::solve(), madness::Nemo::solve_cphf(), su_complex(), madness::PNO::t_solve(), TENSOR_RESULT_TYPE(), test2(), Test7(), test_adaptive_tree(), test_apply(), test_arithmetic(), test_cholesky(), test_combined_operators(), madness::Znemo::test_compute_current_density(), test_consolidate(), test_construction_optimization(), test_converged_function(), test_convergence(), test_conversion(), test_convolution(), test_coulomb(), madness::Diamagnetic_potential_factor::test_factor(), test_full_rank_functor(), test_gelss(), test_gesv(), test_hartree_product(), test_he_potential(), test_inner(), test_integration(), test_inverse(), test_Kcommutator(), test_kinetic(), madness::Znemo::test_landau_wave_function(), test_load_store(), test_lowrank_function(), test_modified(), test_molecular_grid(), test_multiply(), test_multiply_with_f12(), test_norm(), test_operator_apply(), test_partial_inner(), test_partial_inner_3d(), test_partial_inner_6d(), test_projector(), test_projector_outer(), test_Q12_projector(), test_qr(), test_recursive_application(), test_rr_cholesky(), test_scalar_multiplication(), madness::Diamagnetic_potential_factor::test_scalar_potentials(), test_slater_exchange(), test_swap_particles(), test_syev(), test_sygv(), test_tight_diffuse(), test_transformations(), test_two_scale_coefficients(), test_U_el(), madness::Znemo::test_U_potentials(), test_vector_composite(), test_XCOperator(), madness::SRConf< T >::transform(), transform(), transform_dir(), madness::PNO::transform_pairs(), madness::TensorTrain< T >::truncate(), madness::TensorTrain< T >::two_mode_representation(), madness::Localizer::undo_rotation(), madness::NonlinearSolverND< NDIM >::update(), madness::XNonlinearSolver< T, C, Alloc >::update(), madness::PNO::update_pno(), madness::FunctionImpl< T, NDIM >::values2NScoeffs(), and madness::LowRankFunctionFactory< T, NDIM, LDIM >::Yformer().

inner() [21/22]

template<typename T , typename R , std::size_t NDIM>

Tensor< TENSOR_RESULT_TYPE(T,R) > madness::inner	(	World &	world,
		const Function< T, NDIM > &	f,
		const std::vector< Function< R, NDIM > > &	g
	)

Computes the inner product of a function with a function vector - q(i) = inner(f,g[i])

References compress(), f, madness::WorldTaskQueue::fence(), madness::WorldGopInterface::fence(), g, madness::World::gop, PROFILE_BLOCK, madness::Tensor< T >::ptr(), R, madness::WorldGopInterface::sum(), T(), madness::World::taskq, and TENSOR_RESULT_TYPE().

inner() [22/22]

template<typename T , typename R , std::size_t NDIM>

Tensor< TENSOR_RESULT_TYPE(T,R) > madness::inner	(	World &	world,
		const std::vector< Function< T, NDIM > > &	f,
		const std::vector< Function< R, NDIM > > &	g
	)

Computes the element-wise inner product of two function vectors - q(i) = inner(f[i],g[i])

References compress(), f, madness::WorldTaskQueue::fence(), madness::WorldGopInterface::fence(), g, madness::World::gop, m, MADNESS_CHECK, PROFILE_BLOCK, madness::Tensor< T >::ptr(), R, madness::WorldGopInterface::sum(), T(), madness::World::taskq, and TENSOR_RESULT_TYPE().

inner_adaptive()

return f madness::inner_adaptive

(

func

)

innerXX() [1/2]

template<std::size_t NDIM, typename T , std::size_t LDIM, typename R , std::size_t KDIM, std::size_t CDIM = (KDIM + LDIM - NDIM) / 2>

Function<TENSOR_RESULT_TYPE(T, R), NDIM> madness::innerXX	(	const Function< T, LDIM > &	f,
		const Function< R, KDIM > &	g,
		const std::array< int, CDIM >	v1,
		const std::array< int, CDIM >	v2,
		int	task = 0
	)

Computes the partial scalar/inner product between two functions, returns a low-dim function.

syntax similar to the inner product in tensor.h e.g result=inner<3>(f,g),{0},{1}) : r(x,y) = int f(x1,x) g(y,x1) dx1

Parameters

[in]

task

0: everything, 1; prepare only (fence), 2: work only (no fence), 3: finalize only (fence)

References f, g, and task().

innerXX() [2/2]

template<std::size_t NDIM, typename T , std::size_t LDIM, typename R , std::size_t KDIM, std::size_t CDIM = (KDIM + LDIM - NDIM) / 2>

std::vector<Function<TENSOR_RESULT_TYPE(T, R), NDIM> > madness::innerXX	(	const Function< T, LDIM > &	f,
		const std::vector< Function< R, KDIM >> &	vg,
		const std::array< int, CDIM >	v1,
		const std::array< int, CDIM >	v2,
		int	task = 0
	)

Computes the partial scalar/inner product between two functions, returns a low-dim function.

syntax similar to the inner product in tensor.h e.g result=inner<3>(f,g),{0},{1}) : r(x,y) = int f(x1,x) g(y,x1) dx1

Parameters

[in]

task

0: everything, 1; prepare only (fence), 2: work only (no fence), 3: finalize only (fence)

References change_tree_state(), madness::FunctionFactory< T, NDIM >::empty(), madness::WorldContainer< keyT, valueT, hashfunT >::erase(), f, madness::WorldGopInterface::fence(), g, madness::FunctionImpl< T, NDIM >::get_coeffs(), madness::World::gop, madness::FunctionFactory< T, NDIM >::k(), MADNESS_CHECK, NDIM, madness::FunctionFactory< T, NDIM >::nofence(), nonstandard, nonstandard_after_apply, R, madness::FunctionImpl< T, NDIM >::reconstruct(), reconstructed, madness::WorldGopInterface::set_forbid_fence(), madness::World::size(), T(), task(), TENSOR_RESULT_TYPE(), and madness::FunctionFactory< T, NDIM >::thresh().

Referenced by inner().

interleave_rows()

template<typename T >

DistributedMatrix<T> madness::interleave_rows	(	const DistributedMatrix< T > &	a,
		const DistributedMatrix< T > &	b
	)

Generates a distributed matrix with rows of a and b interleaved.

I.e., the even rows of the result will be rows of a , and the odd rows those of b .

The matrices a and b must have the same dimensions and be identically distributed. The result will have a doubled column dimension and column tile size. The row dimension is unchanged.

Parameters

[in]	a	The matrix providing even rows of the result
[in]	b	The matrix providing odd rows of the result

Returns

The result matrix

inverse() [1/3]

template Tensor<double> madness::inverse

(

const Tensor< double > &

A

)

inverse() [2/3]

template Tensor<double_complex> madness::inverse

(

const Tensor< double_complex > &

A

)

inverse() [3/3]

template<typename T >

Tensor<T> madness::inverse

(

const Tensor< T > &

a_in

)

invert general square matrix A

References a, copy(), getrf_(), getri_(), mask_info(), madness::Tensor< T >::ptr(), and TENSOR_ASSERT.

Referenced by madness::projector_irrep::apply_symmetry_operators(), orthonormalize_cd(), madness::PNO::orthonormalize_cholesky(), orthonormalize_rrcd(), madness::Molecule::symmetrize_and_identify_point_group(), and test_inverse().

is_collected()

template<typename T , std::size_t NDIM>

bool madness::is_collected

(

const std::vector< CCPairFunction< T, NDIM >> &

other

)

References madness::CCPairFunction< T, NDIM >::is_collected().

Referenced by madness::CCPairFunction< T, NDIM >::collect_same_types(), and test_consolidate().

is_madness_thread()

bool madness::is_madness_thread ( )

inline

Returns

true if this thread is managed by MADNESS

References madness::detail::thread_tag_accessor(), and ThreadTag_MADNESS.

Referenced by madness::DQueue< T >::push_back(), and madness::DQueue< T >::push_front().

is_same_tensor_type()

template<typename Q , typename R >

bool madness::is_same_tensor_type	(	const GenTensor< R > &	rhs,
		const GenTensor< Q > &	lhs
	)

Referenced by outer().

jacobi()

void madness::jacobi	(	Tensor< double > &	A,
		Tensor< double > &	V,
		const std::vector< int > &	set
	)

References A(), c, e(), k, MADNESS_CHECK, max, ROT, u(), and V().

Referenced by madness::Localizer::compute_core_valence_separation_transformation_matrix(), and main().

junkjunkjunk()

Exchange<double,3>::ExchangeImpl madness::junkjunkjunk	(	World &	world,
		const SCF *	calc,
		const int	ispin
	)

KAIN()

template<typename T >

Tensor<T> madness::KAIN	(	const Tensor< T > &	Q,
		double	rcond = 1e-12
	)

Solves non-linear equation using KAIN (returns coefficients to compute next vector)

The Krylov-accelerated inexact-Newton method employs directional derivatives to estimate the Jacobian in the subspace and separately computes updates in the subspace and its complement.

We wish to solve the non-linear equations where and are vectors of the same dimension (e.g., consider both being MADNESS functions).

Define the following matrices and vector (with and denoting previous iterations in the Krylov subspace and the current iteration):

The subspace equation is of dimension (assuming iterations are indexed from zero) and is given by

The interior and exterior updates may be combined into one simple expression as follows. First, define an additional element of the solution vector

and then the new vector (guess for next iteration) is given by

To employ the solver, each iteration

1. Compute the additional row and column of the matrix that is the inner product between solution vectors ( ) and residuals ( ).
2. Call this routine to compute the coefficients and from these compute the next solution vector
3. Employ step restriction or line search as necessary to ensure stable/robust solution.

Parameters

[in]	Q	The matrix of inner products between subspace vectors and residuals.
[in]	rcond	Threshold for discarding small singular values in the subspace equations.

Returns

Vector for computing next solution vector

References A(), b, c, gelss(), L, m, Q(), and T().

Referenced by check_linear_dependence(), main(), madness::NonlinearSolverND< NDIM >::update(), madness::XNonlinearSolver< T, C, Alloc >::update(), madness::SubspaceK< T, NDIM >::update_subspace(), madness::Subspace< T, NDIM >::update_subspace(), and madness::SCF::update_subspace().

legendre_polynomials()

void madness::legendre_polynomials	(	double	x,
		long	order,
		double *	p
	)

Evaluate the Legendre polynomials up to the given order at x in [-1,1].

p should be an array of order+1 elements.

References nn1, and p().

Referenced by gauss_legendre_numeric(), and legendre_scaling_functions().

legendre_scaling_functions()

void madness::legendre_scaling_functions	(	double	x,
		long	k,
		double *	p
	)

Evaluate the first k Legendre scaling functions.

p should be an array of k elements.

References k, legendre_polynomials(), p(), and phi_norms.

Referenced by madness::FunctionCommonData< T, NDIM >::_init_quadrature(), madness::FunctionImpl< T, NDIM >::eval_cube(), madness::GenericConvolution1D< Q, opT >::Shmoo::operator()(), madness::FunctionImpl< T, NDIM >::phi_for_mul(), and madness::GaussianConvolution1D< Q >::rnlp().

load()

template<class T , std::size_t NDIM>

void madness::load	(	Function< T, NDIM > &	f,
		const std::string	name
	)

References f, and name().

Referenced by dostuff(), main(), madness::Znemo::read_explicit_guess_functions(), madness::OEP::selftest(), madness::PNO::solve_cispd(), and madness::archive::ArchiveImpl< ParallelInputArchive< localarchiveT >, T >::wrap_load().

load_balance()

void madness::load_balance	(	const real_function_6d &	f,
		const bool	leaf
	)

do some load-balancing

Parameters

[in]	f	the function we want to distribute evenly
[in]	leaf	if true: weigh leaf nodes only; if false: weigh internal nodes only

References madness::LoadBalanceDeux< NDIM >::add_tree(), f, madness::LoadBalanceDeux< NDIM >::load_balance(), and madness::FunctionDefaults< NDIM >::redistribute().

Referenced by converge(), madness::MP2::increment(), propagate(), and madness::MP2::solve_residual_equations().

load_coeffs()

void madness::load_coeffs	(	World &	world,
		const char *	dir
	)

Collective routine to load and cache twoscale & autorrelation coefficients.

Only process rank 0 will access the files.

References _cread, autocorr_filename, madness::WorldGopInterface::broadcast(), cache, dir, madness::twoscale_cache_class::g0, madness::twoscale_cache_class::g1, madness::World::gop, madness::twoscale_cache_class::h0, madness::twoscale_cache_class::h1, k, kmax, kmax_autoc, kread, loaded, madness::Tensor< T >::ptr(), madness::World::rank(), read_data(), read_twoscale(), and twoscale_filename.

Referenced by startup().

load_function()

template<typename T , size_t NDIM>

void madness::load_function	(	World &	world,
		std::vector< Function< T, NDIM > > &	f,
		const std::string	name
	)

load a vector of functions

References f, name(), print(), and madness::World::rank().

Referenced by madness::Zcis::compare_to_file(), madness::PNO::load_pnos(), main(), madness::TDHF::make_virtuals(), test_adaptive_tree(), and test_multiply().

load_quadrature()

void madness::load_quadrature	(	World &	world,
		const char *	dir
	)

Collective routine to pre-load and cache the quadrature points and weights.

Only process rank 0 will access the file.

References madness::WorldGopInterface::broadcast(), data_is_read, dir, madness::WorldGopInterface::fence(), filename, madness::World::gop, max_npt, points, madness::World::rank(), read_data(), and weights.

Referenced by startup().

lookup_func()

static xc_func_type* madness::lookup_func ( const std::string &  name, bool  polarized  )

static

References lookup_name(), make_func(), and name().

lookup_id()

static std::string madness::lookup_id ( const int  id )

static

lookup_name()

static int madness::lookup_name ( const std::string &  name )

static

References name().

Referenced by lookup_func().

lowercase()

std::string madness::lowercase

(

const std::string &

s

)

Referenced by create_nuclear_correlation_factor(), symbol_to_atomic_number(), and symbol_to_atomic_number().

lq() [1/3]

template void madness::lq	(	Tensor< double > &	A,
		Tensor< double > &	L
	)

lq() [2/3]

template void madness::lq	(	Tensor< double_complex > &	A,
		Tensor< double_complex > &	L
	)

lq() [3/3]

template<typename T >

void madness::lq	(	Tensor< T > &	A,
		Tensor< T > &	R
	)

compute the LQ decomposition of the matrix A = L Q

LQ decomposition.

Parameters

[in,out]	A	on entry the (n,m) matrix to be decomposed on exit the Q matrix
[out]	R	the (n,n) matrix L (square form)

Todo:

MGR: Check this.

References lq_result(), m, R, and TENSOR_ASSERT.

Referenced by test_qr().

lq_result() [1/3]

template void madness::lq_result	(	Tensor< double > &	A,
		Tensor< double > &	R,
		Tensor< double > &	tau,
		Tensor< double > &	work,
		bool	do_qr
	)

lq_result() [2/3]

template void madness::lq_result	(	Tensor< double_complex > &	A,
		Tensor< double_complex > &	R,
		Tensor< double_complex > &	tau,
		Tensor< double_complex > &	work,
		bool	do_qr
	)

lq_result() [3/3]

template<typename T >

void madness::lq_result	(	Tensor< T > &	A,
		Tensor< T > &	R,
		Tensor< T > &	tau,
		Tensor< T > &	work,
		bool	do_qr
	)

compute the LQ decomposition of the matrix A = L Q

LQ decomposition.

Parameters

[in,out]	A	on entry the (n,m) matrix to be decomposed on exit the Q matrix
[in,out]	R	the (n,n) matrix L (square form)

Todo:

MGR: Check this.

Parameters

[in]

do_qr

do QR instead of LQ

References A(), geqrf_(), k, m, mask_info(), orgqr_(), madness::Tensor< T >::ptr(), R, madness::BaseTensor::size(), T(), and TENSOR_ASSERT.

Referenced by lq(), qr(), and madness::TensorTrain< T >::truncate().

main()

int madness::main	(	int	argc,
		char **	argv
	)

References SafeMPI::COMM_WORLD, madness::WorldGopInterface::fence(), finalize(), madness::World::gop, initialize(), print(), madness::World::rank(), madness::FunctionDefaults< NDIM >::set_k(), smalltest, and startup().

Referenced by main().

make_atom_vec()

std::vector<atom_information<3> > madness::make_atom_vec	(	const Molecule &	molecule,
		double	R1_,
		double	R2_
	)

Creates vector of atom_information for the given molecule

Parameters

[in]	molecule	the molecule
[out]		the vector containing the atom_information for each atom in the molecule

References madness::atom_information< NDIM >::charge, madness::atom_information< NDIM >::coord, madness::Molecule::get_atoms(), molecule, madness::atom_information< NDIM >::R1, madness::atom_information< NDIM >::R2, and slater_radius().

Referenced by madness::ACParameters< NDIM >::initialize().

make_exp()

double madness::make_exp

(

double

x

)

Referenced by madness::smooth< T, NDIM >::make_explog(), propagate(), madness::smooth< T, NDIM >::smooth_density(), test_chin_chen(), and test_trotter().

make_func()

static xc_func_type* madness::make_func ( int  id, bool  polarized  )

static

References func().

Referenced by lookup_func().

make_log()

double madness::make_log

(

double

x

)

References RHOMIN.

Referenced by madness::smooth< T, NDIM >::make_explog(), and madness::smooth< T, NDIM >::smooth_density().

make_nonstandard()

template<typename T , std::size_t NDIM>

void madness::make_nonstandard	(	World &	world,
		std::vector< Function< T, NDIM > > &	v,
		bool	fence = true
	)

Generates non-standard form of a vector of functions.

References change_tree_state(), nonstandard, PROFILE_BLOCK, and v.

Referenced by apply().

make_radius()

template<std::size_t NDIM>

static double madness::make_radius ( const Vector< double, NDIM > &  x )

static

References r2(), and xi.

make_redundant()

template<typename T , std::size_t NDIM>

void madness::make_redundant	(	World &	world,
		const std::vector< Function< T, NDIM > > &	v,
		bool	fence = true
	)

change tree_state of a vector of functions to redundant

References change_tree_state(), PROFILE_BLOCK, redundant, and v.

Referenced by madness::FunctionImpl< T, NDIM >::erase(), and partial_mul().

map_and_mirror()

template<typename T , std::size_t NDIM>

Function<T,NDIM> madness::map_and_mirror	(	const Function< T, NDIM > &	f,
		const std::vector< long > &	map,
		const std::vector< long > &	mirror,
		bool	fence = true
	)

This is replaced with mirror(map(f)), optional fence.

first map then mirror! mirror is similar to mapdim, but maps from x to -x, y to -y, and so on Example: mirror a 3d function on the xy plane: mirror={1,1,-1} Example: c4 rotation of a 3d function around the z axis: x->y, y->-x, z->z: map(1,0,2); mirror(-1,1,1)

Parameters

[in]	map	array holding dimensions
[in]	mirror	array of -1 and 1, corresponding to mirror or not

References f, madness::Function< T, NDIM >::map_and_mirror(), mirror(), and PROFILE_FUNC.

Referenced by madness::pg_operator::operator()().

mapdim()

template<typename T , std::size_t NDIM>

Function<T,NDIM> madness::mapdim	(	const Function< T, NDIM > &	f,
		const std::vector< long > &	map,
		bool	fence = true
	)

Generate a new function by reordering dimensions ... optional fence.

You provide an array of dimension NDIM that maps old to new dimensions according to

newdim = mapdim[olddim]

Works in either scaling function or wavelet basis.

Would be easy to modify this to also change the procmap here if desired but presently it uses the same procmap as f.

References f, madness::Function< T, NDIM >::mapdim(), and PROFILE_FUNC.

Referenced by swap_particles().

mask1()

double madness::mask1 ( double  x )

inline

Referenced by mask3(), and mask3().

mask3()

static double madness::mask3 ( const coordT &  ruser )

static

References lo, mask1(), and user_to_sim().

Referenced by run(), Calculation::set_protocol(), and madness::SCF::set_protocol().

mask_functor_box()

static double madness::mask_functor_box ( const coord_3d &  x )

static

References r2().

mask_info()

static void madness::mask_info ( integer &  info )

static

Referenced by cholesky(), geev(), gelss(), geqp3_result(), gesv(), ggev(), inverse(), lq_result(), orgqr(), rr_cholesky(), svd(), svd_result(), syev(), and sygv().

mask_munging()

template<std::size_t NDIM>

static double madness::mask_munging ( const double  x )

static

matrix_inner() [1/3]

template<typename T , std::size_t NDIM>

DistributedMatrix<T> madness::matrix_inner	(	const DistributedMatrixDistribution &	d,
		const std::vector< Function< T, NDIM > > &	f,
		const std::vector< Function< T, NDIM > > &	g,
		bool	sym = false
	)

References A(), d(), f, g, m, MADNESS_ASSERT, matrix_inner(), P, and PROFILE_FUNC.

matrix_inner() [2/3]

template<typename T , std::size_t NDIM>

void madness::matrix_inner	(	DistributedMatrix< T > &	A,
		const std::vector< Function< T, NDIM > > &	f,
		const std::vector< Function< T, NDIM > > &	g,
		bool	sym = false
	)

References f, g, m, MADNESS_ASSERT, and P.

Referenced by madness::SCF::analyze_vectors(), madness::GTHPseudopotential< Q >::apply_potential(), madness::projector_irrep::apply_symmetry_operators(), madness::Solver< T, NDIM >::build_fock_matrix(), Calculation::calc_optimal_coeffs(), madness::Zcis::canonicalize(), madness::TDHF::canonicalize(), madness::LowRankFunction< T, NDIM, LDIM >::check_orthonormality(), madness::PNO::check_orthonormality(), madness::PNO::compute_cispd_correction_es(), madness::PNO::compute_cispd_correction_gs(), madness::PNO::compute_cispd_fluctuation_matrix(), madness::Nemo::compute_cphf_parallel_term(), madness::PNO::compute_fluctuation_matrix(), madness::Nemo::compute_fock_matrix(), compute_fock_matrix(), madness::F12Potentials::compute_fQg_integrals(), madness::F12Potentials::compute_fQU_integrals(), madness::MP2::compute_gQf(), madness::PNO::compute_projected_mp2_energies(), madness::F12Potentials::compute_regularized_fluctuation_matrix(), madness::F12Potentials::compute_uijab_integrals(), madness::Znemo::compute_vmat(), madness::F12Potentials::compute_xyab_integrals(), diag_and_transform(), madness::SCF::diag_fock_matrix(), distributed_localize_PM(), madness::Solver< T, NDIM >::do_rhs(), madness::Solver< T, NDIM >::do_rhs_simple(), MiniDFT::doit(), doit(), exchange_anchor_test(), exchange_anchor_test(), fixphases(), hamiltonian_matrix(), madness::Znemo::hcore_guess(), madness::Solver< T, NDIM >::initial_guess(), madness::SCF::initial_guess(), initial_guess(), inner(), madness::CCPairFunction< T, NDIM >::inner_internal(), madness::Znemo::iterate(), madness::OEP::iterate(), iterate(), madness::PNO::iterate_pairs_internal(), madness::SCF::kinetic_energy_matrix(), madness::Kinetic< T, NDIM >::kinetic_energy_matrix(), MiniDFT::kinetic_energy_matrix(), madness::LowRankFunction< T, NDIM, LDIM >::l2error(), Calculation::load_mos(), madness::Localizer::localize_boys(), madness::Localizer::localize_new(), main(), madness::TDHF::make_cis_matrix(), madness::SCF::make_fock_matrix(), madness::TDHF::make_guess_from_initial_diagonalization(), make_kinetic_matrix(), madness::Solver< T, NDIM >::make_kinetic_matrix(), matrix_inner(), madness::LowRankFunction< T, NDIM, LDIM >::norm2(), madness::Coulomb< T, NDIM >::operator()(), madness::Nuclear< T, NDIM >::operator()(), madness::Lz< T, NDIM >::operator()(), madness::LocalPotentialOperator< T, NDIM >::operator()(), madness::DNuclear< T, NDIM >::operator()(), madness::Projector< T, NDIM >::operator()(), MyDerivativeOperator< T, NDIM >::operator()(), madness::Exchange< T, NDIM >::operator()(), madness::DerivativeOperator< T, NDIM >::operator()(), BoysLocalization::operator()(), orth(), madness::LowRankFunction< T, NDIM, LDIM >::orthonormalize(), orthonormalize(), madness::NemoBase::orthonormalize(), orthonormalize(), madness::Solver< T, NDIM >::orthonormalize(), madness::SCF::orthonormalize(), orthonormalize_canonical(), orthonormalize_cd(), madness::PNO::orthonormalize_cholesky(), orthonormalize_rrcd(), orthonormalize_symmetric(), madness::Solver< T, NDIM >::print_fock_matrix_eigs(), madness::Solver< T, NDIM >::print_potential_matrix_eigs(), madness::LowRankFunctionFactory< T, NDIM, LDIM >::project(), madness::MolecularOrbitals< T, NDIM >::project_ao(), madness::LowRankFunction< T, NDIM, LDIM >::reorthonormalize(), madness::SCF::restart_aos(), run(), madness::SCF::save_mos(), madness::MolecularOrbitals< T, NDIM >::save_restartaodata(), madness::Solver< T, NDIM >::solve(), madness::Nemo::solve(), madness::SCF::solve(), test_inner(), test_orthogonalization(), test_projector(), test_swap_particles(), and madness::SCF::twoint().

matrix_inner() [3/3]

template<typename T , typename R , std::size_t NDIM>

Tensor< TENSOR_RESULT_TYPE(T,R) > madness::matrix_inner	(	World &	world,
		const std::vector< Function< T, NDIM > > &	f,
		const std::vector< Function< R, NDIM > > &	g,
		bool	sym = false
	)

Computes the matrix inner product of two function vectors - q(i,j) = inner(f[i],g[j])

For complex types symmetric is interpreted as Hermitian.

The current parallel loop is non-optimal but functional.

References compress(), f, madness::WorldGopInterface::fence(), g, get_impl(), madness::World::gop, madness::FunctionImpl< T, NDIM >::inner_local(), madness::Tensor< T >::ptr(), R, madness::WorldGopInterface::sum(), T(), and TENSOR_RESULT_TYPE().

matrix_inner_old()

template<typename T , typename R , std::size_t NDIM>

Tensor< TENSOR_RESULT_TYPE(T,R) > madness::matrix_inner_old	(	World &	world,
		const std::vector< Function< T, NDIM > > &	f,
		const std::vector< Function< R, NDIM > > &	g,
		bool	sym = false
	)

Computes the matrix inner product of two function vectors - q(i,j) = inner(f[i],g[j])

For complex types symmetric is interpreted as Hermitian.

The current parallel loop is non-optimal but functional.

References compress(), conj(), f, madness::WorldGopInterface::fence(), g, madness::World::gop, m, MADNESS_ASSERT, PROFILE_BLOCK, madness::Tensor< T >::ptr(), R, madness::WorldGopInterface::sum(), T(), and TENSOR_RESULT_TYPE().

Referenced by test_inner().

matrix_mul_sparse()

template<typename T , typename R , std::size_t NDIM>

std::vector<std::vector<Function<TENSOR_RESULT_TYPE(T, R), NDIM> > > madness::matrix_mul_sparse	(	World &	world,
		const std::vector< Function< R, NDIM > > &	f,
		const std::vector< Function< R, NDIM > > &	g,
		double	tol,
		bool	fence = true,
		bool	symm = false
	)

Outer product of a vector of functions with a vector of functions using sparsity.

Template Parameters

T	type parameter for first factor
R	type parameter for second factor
NDIM	dimension of first and second factors

Parameters

world	the world
f	first vector of functions
g	second vector of functions
tol	threshold for multiplication
fence	force fence (will always fence if necessary)
symm	if true, only compute f(i) * g(j) for j<=i

Returns

fg(i,j) = f(i) * g(j), as a vector of vectors

References f, madness::WorldGopInterface::fence(), g, madness::World::gop, PROFILE_BLOCK, reconstruct(), and vmulXX().

mirror()

template<typename T , std::size_t NDIM>

Function<T,NDIM> madness::mirror	(	const Function< T, NDIM > &	f,
		const std::vector< long > &	mirrormap,
		bool	fence = true
	)

Generate a new function by mirroring within the dimensions .. optional fence.

similar to mapdim

Parameters

[in]

mirror

array with -1 and 1, corresponding to mirror this dimension or not

References f, madness::Function< T, NDIM >::mirror(), and PROFILE_FUNC.

Referenced by map_and_mirror(), madness::FunctionImpl< T, NDIM >::map_and_mirror(), and madness::pg_operator::operator()().

mTxm() [1/3]

template<>

void madness::mTxm ( long  dimi, long  dimj, long  dimk, double *MADNESS_RESTRICT  c, const double *MADNESS_RESTRICT  a, const double *MADNESS_RESTRICT  b  )

inline

Matrix transpose * matrix (hand unrolled version)

References a, b, c, k, and p().

mTxm() [2/3]

template<typename T , typename Q , typename S >

static void madness::mTxm ( long  dimi, long  dimj, long  dimk, T *MADNESS_RESTRICT  c, const Q *MADNESS_RESTRICT  a, const S *MADNESS_RESTRICT  b  )

inlinestatic

References a, b, c, and mTxm_reference().

mTxm() [3/3]

template<typename T >

void madness::mTxm	(	long	dimi,
		long	dimj,
		long	dimk,
		T *MADNESS_RESTRICT	c,
		const T *	a,
		const T *	b
	)

Matrix += Matrix transpose * matrix ... MKL interface version.

Does C=C+AT*B

c(i,j) = c(i,j) + sum(k) a(k,i)*b(k,j)

References a, b, c, madness::cblas::gemm(), madness::cblas::NoTrans, T(), and madness::cblas::Trans.

Referenced by fast_transform(), inner_result(), and main().

mTxm_reference()

template<typename T , typename Q , typename S >

static void madness::mTxm_reference ( long  dimi, long  dimj, long  dimk, T *MADNESS_RESTRICT  c, const Q *MADNESS_RESTRICT  a, const S *MADNESS_RESTRICT  b  )

inlinestatic

Matrix += Matrix transpose * matrix ... reference implementation (slow but correct)

References a, b, c, and k.

Referenced by mTxm().

mTxmq() [1/2]

template<typename aT , typename bT , typename cT >

void madness::mTxmq	(	long	dimi,
		long	dimj,
		long	dimk,
		cT *MADNESS_RESTRICT	c,
		const aT *	a,
		const bT *	b,
		long	ldb = -1
	)

References a, b, c, and mTxmq_reference().

mTxmq() [2/2]

template<typename T >

void madness::mTxmq	(	long	dimi,
		long	dimj,
		long	dimk,
		T *MADNESS_RESTRICT	c,
		const T *	a,
		const T *	b,
		long	ldb = -1
	)

Matrix = Matrix transpose * matrix ... MKL interface version.

Does C=AT*B whereas mTxm does C=C+AT*B.

c(i,j) = sum(k) a(k,i)*b(k,j)  <------ does not accumulate into C

ldb is the last dimension of b in C storage (the leading dimension in fortran storage). It is here to accomodate multiplying by a matrix stored with ldb>dimj which happens in madness when transforming with low rank matrices. A matrix in dense storage has ldb=dimj which is the default for backward compatibility.

References a, b, c, madness::cblas::gemm(), MADNESS_ASSERT, madness::cblas::NoTrans, T(), and madness::cblas::Trans.

Referenced by madness::SeparatedConvolution< Q, NDIM >::apply_transformation(), madness::SeparatedConvolution< Q, NDIM >::apply_transformation2(), fast_transform(), main(), timer(), and trantimer().

mTxmq_padding()

template<typename aT , typename bT , typename cT >

void madness::mTxmq_padding	(	long	dimi,
		long	dimj,
		long	dimk,
		long	ext_b,
		cT *	c,
		const aT *	a,
		const bT *	b
	)

References a, b, c, k, and malloc().

Referenced by madness::SeparatedConvolution< Q, NDIM >::apply_transformation(), and fast_transform().

mTxmq_reference()

template<typename aT , typename bT , typename cT >

void madness::mTxmq_reference	(	long	dimi,
		long	dimj,
		long	dimk,
		cT *MADNESS_RESTRICT	c,
		const aT *	a,
		const bT *	b,
		long	ldb = -1
	)

Matrix = Matrix transpose * matrix ... slow reference implementation.

This routine does C=AT*B whereas mTxm does C=C+AT*B.

c(i,j) = sum(k) a(k,i)*b(k,j)  <------ does not accumulate into C

ldb is the last dimension of b in C storage (the leading dimension in fortran storage). It is here to accomodate multiplying by a matrix stored with ldb>dimj which happens in madness when transforming with low rank matrices. A matrix in dense storage has ldb=dimj which is the default for backward compatibility.

References a, b, c, k, and MADNESS_ASSERT.

Referenced by mTxmq().

mTxmT() [1/3]

template<>

void madness::mTxmT ( long  dimi, long  dimj, long  dimk, double *MADNESS_RESTRICT  csave, const double *MADNESS_RESTRICT  asave, const double *MADNESS_RESTRICT  b  )

inline

Matrix transpose * matrix transpose (hand tiled and unrolled)

References a, b, c, k, q(), and sum().

mTxmT() [2/3]

template<typename T , typename Q , typename S >

static void madness::mTxmT ( long  dimi, long  dimj, long  dimk, T *MADNESS_RESTRICT  c, const Q *MADNESS_RESTRICT  a, const S *MADNESS_RESTRICT  b  )

inlinestatic

References a, b, c, and mTxmT_reference().

mTxmT() [3/3]

template<typename T >

void madness::mTxmT	(	long	dimi,
		long	dimj,
		long	dimk,
		T *MADNESS_RESTRICT	c,
		const T *	a,
		const T *	b
	)

Matrix += Matrix transpose * matrix transpose ... MKL interface version.

Does C=C+AT*BT

c(i,j) = c(i,j) + sum(k) a(k,i)*b(j,k)

References a, b, c, madness::cblas::gemm(), T(), and madness::cblas::Trans.

Referenced by inner_result().

mTxmT_reference()

template<typename T , typename Q , typename S >

static void madness::mTxmT_reference ( long  dimi, long  dimj, long  dimk, T *MADNESS_RESTRICT  c, const Q *MADNESS_RESTRICT  a, const S *MADNESS_RESTRICT  b  )

inlinestatic

Matrix += Matrix transpose * matrix transpose reference implementation (slow but correct)

References a, b, c, and k.

Referenced by mTxmT().

mul() [1/7]

template<typename L , typename R , std::size_t NDIM>

Function<TENSOR_RESULT_TYPE(L,R),NDIM> madness::mul	(	const Function< L, NDIM > &	left,
		const Function< R, NDIM > &	right,
		bool	fence = true
	)

Same as operator* but with optional fence and no automatic reconstruction.

References mul_sparse().

mul() [2/7]

template<typename Q , typename T , std::size_t NDIM>

Function<TENSOR_RESULT_TYPE(Q,T),NDIM> madness::mul	(	const Function< T, NDIM > &	f,
		const Q	alpha,
		bool	fence = true
	)

Returns new function equal to f(x)*alpha with optional fence.

References alpha, f, mul(), and PROFILE_FUNC.

mul() [3/7]

template<typename Q , typename T , std::size_t NDIM>

Function<TENSOR_RESULT_TYPE(Q,T),NDIM> madness::mul	(	const Q	alpha,
		const Function< T, NDIM > &	f,
		bool	fence = true
	)

Returns new function equal to alpha*f(x) with optional fence.

References alpha, f, NDIM, PROFILE_FUNC, Q(), T(), TENSOR_RESULT_TYPE(), and VERIFY_TREE.

Referenced by madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::ExchangeImpl(), KPeriodicBSHOperator::apply(), apply_potential(), madness::Nemo::compute_all_cphf(), madness::Nemo::compute_cphf_parallel_term(), madness::PNO::compute_fluctuation_matrix(), madness::Nemo::compute_fock_matrix(), madness::F12Potentials::compute_fQc_integrals_ij(), madness::Zcis::compute_potentials(), madness::F12Potentials::compute_regularized_fluctuation_matrix(), madness::PNO::compute_V_aj_i(), cross(), madness::CCPairFunction< T, NDIM >::dirac_convolution_decomposed(), dot(), DF::exchange(), fixphases(), madness::Nemo::hessian(), inner_func(), DF::iterate(), madness::Nemo::kinetic_energy_potential(), madness::TDHF::make_bra(), madness::Nemo::make_density(), madness::TDHF::make_perturbed_fock_matrix(), molresponseExchange(), mul(), madness::CCConvolutionOperator< T, NDIM >::operator()(), madness::DNuclear< T, NDIM >::operator()(), madness::response_space::operator*(), operator*(), madness::CCPairFunction< T, NDIM >::project_out_op_decomposed(), madness::Nemo::solve(), madness::Nemo::solve_cphf(), test_Kcommutator(), test_math(), and vector_to_PQ().

mul() [4/7]

template<typename T , typename R , std::size_t NDIM>

std::vector< Function<TENSOR_RESULT_TYPE(T,R), NDIM> > madness::mul	(	World &	world,
		const Function< T, NDIM > &	a,
		const std::vector< Function< R, NDIM > > &	v,
		bool	fence = true
	)

Multiplies a function against a vector of functions — q[i] = a * v[i].

References a, madness::WorldGopInterface::fence(), madness::World::gop, PROFILE_BLOCK, reconstruct(), v, and vmulXX().

mul() [5/7]

template<typename T , typename R , std::size_t NDIM>

std::vector< Function<TENSOR_RESULT_TYPE(T,R), NDIM> > madness::mul	(	World &	world,
		const Function< T, NDIM > &	a,
		const std::vector< Function< R, NDIM > > &	v,
		const unsigned int	blk = 1,
		const bool	fence = true
	)

Multiplies a function against a vector of functions — q[i] = a * v[i].

References a, madness::WorldGopInterface::fence(), madness::World::gop, PROFILE_BLOCK, reconstruct(), v, and vmulXX().

mul() [6/7]

template<typename T , typename R , std::size_t NDIM>

std::vector< Function<TENSOR_RESULT_TYPE(T,R), NDIM> > madness::mul	(	World &	world,
		const std::vector< Function< T, NDIM > > &	a,
		const std::vector< Function< R, NDIM > > &	b,
		bool	fence = true
	)

Multiplies two vectors of functions q[i] = a[i] * b[i].

References a, b, madness::WorldGopInterface::fence(), madness::World::gop, mul(), NDIM, PROFILE_BLOCK, q(), R, reconstruct(), T(), and TENSOR_RESULT_TYPE().

mul() [7/7]

template<typename T , typename R , std::size_t NDIM>

std::vector< Function<TENSOR_RESULT_TYPE(T,R), NDIM> > madness::mul	(	World &	world,
		const std::vector< Function< T, NDIM > > &	a,
		const std::vector< Function< R, NDIM > > &	b,
		bool	fence = true,
		unsigned int	blk = 1
	)

Multiplies two vectors of functions q[i] = a[i] * b[i].

References a, b, madness::WorldGopInterface::fence(), madness::World::gop, mul(), NDIM, PROFILE_BLOCK, q(), R, reconstruct(), T(), and TENSOR_RESULT_TYPE().

mul_sparse() [1/3]

template<typename L , typename R , std::size_t NDIM>

Function<TENSOR_RESULT_TYPE(L,R),NDIM> madness::mul_sparse	(	const Function< L, NDIM > &	left,
		const Function< R, NDIM > &	right,
		double	tol,
		bool	fence = true
	)

Sparse multiplication — left and right must be reconstructed and if tol!=0 have tree of norms already created.

References madness::Function< T, NDIM >::get_impl(), madness::Function< T, NDIM >::is_reconstructed(), L, MADNESS_ASSERT, NDIM, PROFILE_FUNC, R, TENSOR_RESULT_TYPE(), madness::Function< T, NDIM >::verify(), VERIFY_TREE, and madness::Function< T, NDIM >::verify_tree().

Referenced by madness::SCF::analyze_vectors(), madness::Solver< T, NDIM >::apply_potential(), madness::GTHPseudopotential< Q >::apply_potential(), MiniDFT::apply_potential(), madness::SCF::apply_potential(), madness::GTHPseudopotential< Q >::apply_potential_simple(), Calculation::calc_optimal_coeffs(), madness::MolecularOrbitals< T, NDIM >::compute_center(), madness::F12Potentials::compute_fQg_integrals(), madness::F12Potentials::compute_fQU_integrals(), madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::compute_K_tile(), Calculation::compute_residuals(), madness::F12Potentials::compute_xyab_integrals(), madness::F12Potentials::convolve_with_fU(), madness::F12Potentials::convolve_with_nonlocal_U(), madness::F12Potentials::convolve_with_U(), madness::SCF::initial_guess(), madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::K_small_memory(), madness::Localizer::localize_boys(), Calculation::make_reference(), Calculation::make_Upsi(), mul(), BoysLocalization::operator()(), and madness::SCF::twoint().

mul_sparse() [2/3]

template<typename T , typename R , std::size_t NDIM>

std::vector< Function<TENSOR_RESULT_TYPE(T,R), NDIM> > madness::mul_sparse	(	World &	world,
		const Function< T, NDIM > &	a,
		const std::vector< Function< R, NDIM > > &	v,
		const double	tol,
		const bool	fence = true,
		const unsigned int	blk = 1
	)

Multiplies a function against a vector of functions using sparsity of a and v[i] — q[i] = a * v[i].

References a, madness::WorldGopInterface::fence(), madness::World::gop, norm_tree(), PROFILE_BLOCK, reconstruct(), v, and vmulXX().

mul_sparse() [3/3]

template<typename T , typename R , std::size_t NDIM>

std::vector< Function<TENSOR_RESULT_TYPE(T,R), NDIM> > madness::mul_sparse	(	World &	world,
		const Function< T, NDIM > &	a,
		const std::vector< Function< R, NDIM > > &	v,
		double	tol,
		bool	fence = true
	)

Multiplies a function against a vector of functions using sparsity of a and v[i] — q[i] = a * v[i].

References a, madness::WorldGopInterface::fence(), madness::World::gop, PROFILE_BLOCK, reconstruct(), v, and vmulXX().

multi_to_multi_op_values()

template<typename T , typename opT , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::multi_to_multi_op_values	(	const opT &	op,
		const std::vector< Function< T, NDIM > > &	vin,
		const bool	fence = true
	)

apply op on the input vector yielding an output vector of functions

Parameters

[in]	op	the operator working on vin
[in]	vin	vector of input Functions; needs to be refined to common level!

Returns

vector of output Functions vout = op(vin)

References MADNESS_ASSERT, madness::Function< T, NDIM >::multi_to_multi_op_values(), op(), and madness::Function< T, NDIM >::set_impl().

Referenced by madness::XCOperator< T, NDIM >::apply_xc_kernel(), madness::OEP::compute_dcep_correction(), madness::OEP::compute_mrks_correction(), madness::OEP::compute_ocep_correction(), madness::OEP::compute_slater_potential(), and test_multi_to_multi_op().

multiop_values()

template<typename T , typename opT , std::size_t NDIM>

Function<T,NDIM> madness::multiop_values	(	const opT &	op,
		const std::vector< Function< T, NDIM > > &	vf
	)

References madness::Function< T, NDIM >::multiop_values(), op(), and madness::Function< T, NDIM >::set_impl().

multiply() [1/2]

template<typename T , std::size_t NDIM, std::size_t LDIM>

Function<T,NDIM> madness::multiply	(	const Function< T, NDIM >	f,
		const Function< T, LDIM >	g,
		const int	particle,
		const bool	fence = true
	)

multiply a high-dimensional function with a low-dimensional function

Parameters

[in]	f	NDIM function of 2 particles: f=f(1,2)
[in]	g	LDIM function of 1 particle: g=g(1) or g=g(2)
[in]	particle	if g=g(1) or g=g(2)

Returns

h(1,2) = f(1,2) * g(p)

References f, madness::WorldGopInterface::fence(), g, madness::Function< T, NDIM >::get_impl(), madness::World::gop, MADNESS_ASSERT, NDIM, reconstructed, redundant, madness::Function< T, NDIM >::set_impl(), and madness::Function< T, NDIM >::world().

Referenced by madness::FunctionImpl< T, NDIM >::assemble_coefficients(), madness::MP3::compute_mp3_ghij(), madness::MP3::compute_mp3_ghij_fast(), madness::MP3::compute_mp3_klmn(), madness::MP3::compute_mp3_klmn_fast(), madness::CCConvolutionOperator< T, NDIM >::operator()(), test_exchange(), test_Kcommutator(), and test_multiply().

multiply() [2/2]

template<typename T , std::size_t NDIM, std::size_t LDIM>

std::vector<Function<T,NDIM> > madness::multiply	(	const Function< T, NDIM >	f,
		const std::vector< Function< T, LDIM > >	g,
		const std::tuple< int, int, int >	v
	)

References f, g, and v.

munge()

template<std::size_t NDIM>

static double madness::munge ( const double  x )

static

Referenced by da_ldaop(), and Vdynamic().

mxm() [1/3]

template<>

void madness::mxm ( long  dimi, long  dimj, long  dimk, double *MADNESS_RESTRICT  c, const double *MADNESS_RESTRICT  a, const double *MADNESS_RESTRICT  b  )

inline

Matrix * matrix (hand unrolled version)

References a, b, c, k, and p().

mxm() [2/3]

template<typename T , typename Q , typename S >

static void madness::mxm ( long  dimi, long  dimj, long  dimk, T *MADNESS_RESTRICT  c, const Q *MADNESS_RESTRICT  a, const S *MADNESS_RESTRICT  b  )

inlinestatic

References a, b, c, and mxm_reference().

mxm() [3/3]

template<typename T >

void madness::mxm	(	long	dimi,
		long	dimj,
		long	dimk,
		T *MADNESS_RESTRICT	c,
		const T *	a,
		const T *	b
	)

Matrix += Matrix * matrix ... BLAS/MKL interface version.

Does C=C+A*B

c(i,j) = c(i,j) + sum(k) a(i,k)*b(k,j)

References a, b, c, madness::cblas::gemm(), madness::cblas::NoTrans, and T().

Referenced by inner_result().

mxm_reference()

template<typename T , typename Q , typename S >

static void madness::mxm_reference ( long  dimi, long  dimj, long  dimk, T *MADNESS_RESTRICT  c, const Q *MADNESS_RESTRICT  a, const S *MADNESS_RESTRICT  b  )

inlinestatic

Matrix += Matrix * matrix reference implementation (slow but correct)

References a, b, c, and k.

Referenced by mxm().

mxmT() [1/3]

template<>

void madness::mxmT ( long  dimi, long  dimj, long  dimk, double *MADNESS_RESTRICT  c, const double *MADNESS_RESTRICT  a, const double *MADNESS_RESTRICT  b  )

inline

Matrix * matrix transpose (hand unrolled version)

References a, b, c, k, and sum().

mxmT() [2/3]

template<typename T , typename Q , typename S >

static void madness::mxmT ( long  dimi, long  dimj, long  dimk, T *MADNESS_RESTRICT  c, const Q *MADNESS_RESTRICT  a, const S *MADNESS_RESTRICT  b  )

inlinestatic

References a, b, c, and mxmT_reference().

mxmT() [3/3]

template<typename T >

void madness::mxmT	(	long	dimi,
		long	dimj,
		long	dimk,
		T *MADNESS_RESTRICT	c,
		const T *	a,
		const T *	b
	)

Matrix += Matrix * matrix transpose ... MKL interface version.

Does C=C+A*BT

c(i,j) = c(i,j) + sum(k) a(i,k)*b(j,k)

References a, b, c, madness::cblas::gemm(), madness::cblas::NoTrans, T(), and madness::cblas::Trans.

Referenced by madness::FunctionImpl< T, NDIM >::do_inner_localX(), and inner_result().

mxmT_reference()

template<typename T , typename Q , typename S >

static void madness::mxmT_reference ( long  dimi, long  dimj, long  dimk, T *MADNESS_RESTRICT  c, const Q *MADNESS_RESTRICT  a, const S *MADNESS_RESTRICT  b  )

inlinestatic

Matrix += Matrix * matrix transpose ... reference implementation (slow but correct)

References a, b, c, k, sum(), and T().

Referenced by mxmT().

my_conj_transpose() [1/4]

STATIC Tensor<double> madness::my_conj_transpose

(

Tensor< double >

a

)

References a, and transpose().

my_conj_transpose() [2/4]

STATIC Tensor<double_complex> madness::my_conj_transpose

(

Tensor< double_complex >

a

)

References a, and conj_transpose().

my_conj_transpose() [3/4]

STATIC Tensor<float> madness::my_conj_transpose

(

Tensor< float >

a

)

References a, and transpose().

Referenced by test_cholesky(), test_rr_cholesky(), and test_sygv().

my_conj_transpose() [4/4]

STATIC Tensor<float_complex> madness::my_conj_transpose

(

Tensor< float_complex >

a

)

References a, and conj_transpose().

myusleep()

static void madness::myusleep ( unsigned int  us )

inlinestatic

Sleep or spin for specified number of microseconds.

Wrapper to ensure desired behavior across various platforms.

Parameters

[in]

us

The number of microseconds.

References cpu_relax(), cpu_time(), and e().

Referenced by madness::WorldAmInterface::~WorldAmInterface(), madness::ThreadPool::await(), madness::RMI::begin(), madness::RMI::RmiTask::exit(), madness::RMI::RmiTask::process_some(), madness::WorldAmInterface::send(), and madness::MutexWaiter::yield().

name()

std::string madness::name ( const FuncType &  type, const int  ex = -1  )

inline

References HOLE, MADNESS_CHECK_THROW, MADNESS_EXCEPTION, MIXED, PARTICLE, RESPONSE, and type().

Referenced by madness::Fock< T, NDIM >::add_operator(), assign_calctype(), madness::QCCalculationParametersBase::check_type(), madness::CCConvolutionOperator< T, NDIM >::clear_intermediates(), madness::Gnuplot::db(), madness::Molecule::GeometryParameters::derive_source_type_from_name(), madness::Cloud::do_load(), do_vtk_plots(), madness::Gnuplot::doplot(), AnsatzBase::filename(), madness::WorldProfile::find(), madness::smooth< T, NDIM >::gaussian_smoothing(), get_charge_from_file(), madness::BasisFunctions::guess_virtuals_internal(), madness::CCConvolutionOperator< T, NDIM >::info(), madness::CC2::initialize_singles(), load(), madness::Cloud::load_from_cache(), load_function(), load_function(), madness::ElectronPair::load_pair(), madness::GTHPseudopotential< Q >::load_pseudo_from_file(), madness::Cloud::load_tuple(), lookup_func(), lookup_name(), main(), madness::PoolTaskInterface::make_id(), madness::smooth< T, NDIM >::make_plots(), madness::smooth< T, NDIM >::merge_functions(), madness::CC_vecfunction::name(), madness::CCConvolutionOperator< T, NDIM >::operator()(), operator<<(), p(), madness::MacroTaskPartitioner::partition_tasks(), plot(), plot_plane(), madness::Molecule::position_stream_in_library(), madness::BasisFunctions::predefined_guess(), MatrixOperator::print(), madness::MolecularOrbitals< T, NDIM >::print_cubefiles(), madness::profiling::TaskEvent::print_demangled(), madness::FunctionImpl< T, NDIM >::print_size(), madness::Function< T, NDIM >::print_size(), madness::guessfactory::PolynomialFunctor::read_string(), madness::Molecule::read_structure_from_library(), madness::WorldProfile::recv_stats(), madness::WorldProfile::register_id(), madness::Fock< T, NDIM >::remove_operator(), save(), save_function(), save_function(), show_norms(), madness::SCF::solve(), solve(), madness::CC2::solve_cc2(), madness::Cloud::store_other(), madness::ElectronPair::store_pair(), test_exchange(), test_exchange(), test_kinetic(), test_serialize(), madness::QCCalculationParametersBase::try_setting_user_defined_value(), madness::CCConvolutionOperator< T, NDIM >::update_elements(), and wopen_().

new_am_arg()

template<typename... argT>

AmArg* madness::new_am_arg ( const argT &...  args )

inline

Convenience template for serializing arguments into a new AmArg.

References alloc_am_arg(), serialize_am_args(), and madness::archive::BufferOutputArchive::size().

Referenced by madness::WorldGopInterface::bcast_task(), madness::WorldGopInterface::group_bcast_task(), madness::RemoteReference< T >::reset(), madness::WorldObject< Derived >::send_am(), madness::WorldObject< Derived >::send_task(), madness::WorldTaskQueue::send_task(), madness::FutureImpl< T >::set(), and madness::FutureImpl< T >::set_handler().

nonlinear_vector_solver()

template<typename T , std::size_t NDIM>

static XNonlinearSolver<std::vector<Function<T,NDIM> >,T,vector_function_allocator<T,NDIM> > madness::nonlinear_vector_solver ( World &  world, const long  nvec  )

inlinestatic

References T().

nonstandard()

template<typename T , std::size_t NDIM>

void madness::nonstandard	(	World &	world,
		std::vector< Function< T, NDIM > > &	v,
		unsigned int	blk = 1,
		bool	fence = true
	)

Generates non-standard form of a vector of functions.

References madness::WorldGopInterface::fence(), madness::World::gop, PROFILE_BLOCK, reconstruct(), and v.

norm2()

template<typename T , std::size_t NDIM>

double madness::norm2	(	World &	world,
		const std::vector< Function< T, NDIM > > &	v
	)

Computes the 2-norm of a vector of functions.

References madness::WorldGopInterface::fence(), madness::World::gop, PROFILE_BLOCK, madness::WorldGopInterface::sum(), and v.

Referenced by Calculation::Calculation(), DipoleVector::DipoleVector(), madness::F12Potentials::F12Potentials(), NuclearVector::NuclearVector(), madness::Solver< T, NDIM >::apply_potential(), madness::MP2::asymmetry(), check(), check_multiplication_table_c2v(), check_operator_multiplications_2d(), check_operator_multiplications_3d(), check_vector(), compare(), compare_calc_and_mos(), madness::NemoBase::compute_kinetic_energy1(), madness::NemoBase::compute_kinetic_energy1a(), Calculation::compute_residuals(), madness::F12Potentials::convolve_with_fU(), madness::TDHF::get_tda_potential(), madness::Solver< T, NDIM >::gram_schmidt(), madness::OEP::iterate(), iterate(), madness::Zcis::iterate(), DF::iterate(), madness::CC2::iterate_lrcc2_pairs(), madness::CC2::iterate_singles(), madness::TDHF::iterate_vectors(), iterate_xy(), madness::Nemo::kinetic_energy_potential(), main(), madness::EigSolver< T, NDIM >::multi_solve(), norm(), madness::response_space::norm2(), madness::X_space::norm2s(), Fcwf::normalize(), AnsatzBase::normalize(), madness::Zcis::normalize(), MatrixOperator::operator()(), print_info(), madness::CCPairFunction< T, NDIM >::print_size(), q_c(), madness::InitParameters::readnw(), madness::OEP::selftest(), SVPESolver::solve(), madness::Nemo::solve(), madness::SCF::solve(), madness::Nemo::solve_cphf(), madness::smooth< T, NDIM >::test_1d(), test_adaptive_tree(), test_add(), TEST_CASE(), test_combined_operators(), test_converged_function(), test_convergence(), test_cross(), madness::Diamagnetic_potential_factor::test_factor(), test_gconv(), test_inner(), test_io(), test_kinetic(), madness::Diamagnetic_potential_factor::test_lz_commutator(), test_math(), test_matrix_mul_sparse(), test_multi_to_multi_op(), test_multiply(), test_projector(), test_projector_outer(), test_Q12_projector(), test_recursive_application(), test_rot(), test_scalar_multiplication(), test_swap_particles(), test_transform(), test_unaryop(), test_vector_composite(), madness::Diamagnetic_potential_factor::test_vector_potentials(), testbsh(), update(), MiniDFT::update(), and madness::Solver< T, NDIM >::update_orbitals().

norm2s() [1/2]

template<typename T , std::size_t NDIM>

std::vector<double> madness::norm2s	(	World &	world,
		const std::vector< Function< T, NDIM > > &	v
	)

Computes the 2-norms of a vector of functions.

References madness::WorldGopInterface::fence(), madness::World::gop, PROFILE_BLOCK, madness::WorldGopInterface::sum(), and v.

Referenced by madness::TDHF::analyze(), madness::Zcis::compare_to_file(), madness::guessfactory::compute_centroids(), madness::SCF::compute_residual(), madness::Solver< T, NDIM >::compute_rho(), madness::Znemo::do_step_restriction(), madness::SCF::do_step_restriction(), MiniDFT::doit(), doit(), eigenvector_test(), exchange_anchor_test(), exchange_anchor_test(), madness::Zcis::iterate(), madness::TDHF::iterate_vectors(), madness::NemoBase::normalize(), normalize(), normalize2(), Spinor::print_norms(), madness::Solver< T, NDIM >::solve(), madness::Nemo::solve_cphf(), test2(), test_conversion(), and madness::LowRankFunctionFactory< T, NDIM, LDIM >::Yformer().

norm2s() [2/2]

template<typename T , std::size_t NDIM>

std::vector<double> madness::norm2s	(	World &	world,
		const std::vector< Function< T, NDIM > > &	v,
		const unsigned int	blk = 1,
		const bool	fence = true
	)

Computes the 2-norms of a vector of functions.

References madness::WorldGopInterface::fence(), madness::World::gop, PROFILE_BLOCK, madness::WorldGopInterface::sum(), and v.

norm2s_T()

template<typename T , std::size_t NDIM>

Tensor<double> madness::norm2s_T	(	World &	world,
		const std::vector< Function< T, NDIM >> &	v
	)

Computes the 2-norms of a vector of functions.

References madness::WorldGopInterface::fence(), madness::World::gop, PROFILE_BLOCK, madness::BaseTensor::size(), madness::WorldGopInterface::sum(), and v.

Referenced by madness::X_space::component_norm2s().

norm_tree() [1/2]

template<typename T , std::size_t NDIM>

void madness::norm_tree	(	World &	world,
		const std::vector< Function< T, NDIM > > &	v,
		bool	fence = true
	)

Makes the norm tree for all functions in a vector.

References madness::WorldGopInterface::fence(), madness::World::gop, PROFILE_BLOCK, and v.

Referenced by madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::compute_K_tile(), madness::FunctionImpl< T, NDIM >::make_redundant_op(), Calculation::make_reference(), mul_sparse(), norm_tree(), madness::FunctionNode< T, NDIM >::set_norm_tree(), and madness::SCF::twoint().

norm_tree() [2/2]

template<typename T , std::size_t NDIM>

void madness::norm_tree	(	World &	world,
		const std::vector< Function< T, NDIM > > &	v,
		bool	fence = true,
		unsigned int	blk = 1
	)

Makes the norm tree for all functions in a vector.

References madness::WorldGopInterface::fence(), madness::World::gop, norm_tree(), PROFILE_BLOCK, and v.

normalize()

template<typename T , std::size_t NDIM>

void madness::normalize	(	World &	world,
		std::vector< Function< T, NDIM > > &	v,
		bool	fence = true
	)

Normalizes a vector of functions — v[i] = v[i].scale(1.0/v[i].norm2())

References madness::WorldGopInterface::fence(), madness::World::gop, norm2s(), PROFILE_BLOCK, scale(), and v.

Referenced by madness::SCF::diag_fock_matrix(), madness::SVDTensor< T >::divide_and_conquer_reduce(), madness::BasisFunctions::guess_contracted_virtuals_from_file(), madness::BasisFunctions::guess_virtual_gaussian_shell(), madness::Solver< T, NDIM >::initial_guess(), madness::SCF::initial_guess(), Calculation::load_mos(), make_basis(), MiniDFT::makeao(), makeao_slow(), AnsatzBase::normalize(), orth(), madness::SVDTensor< T >::orthonormalize(), orthonormalize(), madness::SCF::orthonormalize(), madness::SVDTensor< T >::orthonormalize_random(), madness::SCF::project(), madness::SCF::project_ao_basis_only(), madness::InitParameters::readnw(), madness::Solver< T, NDIM >::reproject(), madness::SCF::solve(), test_convergence(), update(), MiniDFT::update(), and madness::LowRankFunctionFactory< T, NDIM, LDIM >::Yformer().

operator!=() [1/3]

bool madness::operator!= ( const DistributedID &  left, const DistributedID &  right  )

inline

Distributed ID inequality comparison operator.

Parameters

[in]	left	The first key to compare.
[in]	right	The second key to compare.

Returns

True when first or second of left and right are not equal; otherwise false.

operator!=() [2/3]

bool madness::operator!=	(	const QCCalculationParametersBase &	p1,
		const QCCalculationParametersBase &	p2
	)

operator!=() [3/3]

bool madness::madness::operator!=	(	const ResponseParameters &	p1,
		const ResponseParameters &	p2
	)

operator*() [1/12]

template<typename T , std::size_t NDIM>

std::vector<CCPairFunction<T,NDIM> > madness::operator*	(	const double	fac,
		const std::vector< CCPairFunction< T, NDIM > > &	arg
	)

References arg().

operator*() [2/12]

template<typename L , typename R , std::size_t NDIM>

Function<TENSOR_RESULT_TYPE(L,R), NDIM> madness::operator*	(	const Function< L, NDIM > &	left,
		const Function< R, NDIM > &	right
	)

Multiplies two functions with the new result being of type TensorResultType<L,R>

Using operator notation forces a global fence after each operation but also enables us to automatically reconstruct the input functions as required.

References madness::Function< T, NDIM >::is_on_demand(), madness::Function< T, NDIM >::is_reconstructed(), MADNESS_ASSERT, mul(), and madness::Function< T, NDIM >::reconstruct().

operator*() [3/12]

template<typename T , typename R , std::size_t NDIM>

std::vector<Function<TENSOR_RESULT_TYPE(T,R),NDIM> > madness::operator*	(	const Function< T, NDIM > &	a,
		const std::vector< Function< R, NDIM > > &	v
	)

multiply a vector of functions with a function: r[i] = v[i] * a

References a, mul(), NDIM, R, T(), TENSOR_RESULT_TYPE(), and v.

operator*() [4/12]

template<typename Q , typename T , std::size_t NDIM>

Function<TENSOR_RESULT_TYPE(Q,T),NDIM> madness::operator*	(	const Function< T, NDIM > &	f,
		const Q	alpha
	)

Returns new function equal to f(x)*alpha.

Using operator notation forces a global fence after each operation

References alpha, f, and mul().

operator*() [5/12]

template<typename T , typename Q >

IsSupported< TensorTypeData<Q>, GenTensor<T> >::type madness::operator*	(	const Q &	x,
		const GenTensor< T > &	t
	)

The class defines tensor op scalar ... here define scalar op tensor.

operator*() [6/12]

template<typename Q , typename T , std::size_t NDIM>

Function<TENSOR_RESULT_TYPE(Q,T),NDIM> madness::operator*	(	const Q	alpha,
		const Function< T, NDIM > &	f
	)

Returns new function equal to alpha*f(x)

Using operator notation forces a global fence after each operation

References alpha, f, and mul().

operator*() [7/12]

template<typename T , typename R , std::size_t NDIM>

std::vector<Function<TENSOR_RESULT_TYPE(T,R),NDIM> > madness::operator*	(	const R	fac,
		const std::vector< Function< T, NDIM > > &	rhs
	)

References copy(), NDIM, R, scale(), T(), and TENSOR_RESULT_TYPE().

operator*() [8/12]

template<typename T , typename R , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::operator*	(	const std::vector< Function< T, NDIM > > &	rhs,
		const R	fac
	)

References copy(), NDIM, R, scale(), T(), and TENSOR_RESULT_TYPE().

operator*() [9/12]

template<typename T , typename R , std::size_t NDIM>

std::vector<Function<TENSOR_RESULT_TYPE(T,R),NDIM> > madness::operator*	(	const std::vector< Function< T, NDIM > > &	v,
		const Function< R, NDIM > &	a
	)

multiply a vector of functions with a function: r[i] = a * v[i]

References a, mul(), NDIM, R, T(), TENSOR_RESULT_TYPE(), and v.

operator*() [10/12]

template<typename T , typename U , std::size_t N>

Vector<T,N> madness::operator*	(	T	l,
		Vector< U, N >	r
	)

Scale a Vector.

Multiply the scalar value l by each Vector element.

Template Parameters

T	The left-hand scalar type.
U	The right-hand Vector element type.
N	The Vector size.

Parameters

[in]	l	The left-hand scalar value to be multiplied by the Vector elements.
[in]	r	The right-hand Vector.

Returns

A new Vector, c, where c[i]==(l*r[i]).

References N.

operator*() [11/12]

template<typename T , std::size_t N, typename U >

Vector<T,N> madness::operator*	(	Vector< T, N >	l,
		const Vector< U, N > &	r
	)

Multiply (element-wise) two Vectors.

Do an element-wise multiplication of l and r and return the result in a new Vector.

Template Parameters

T	The left-hand Vector element type.
N	The Vector size.
U	The right-hand Vector element type.

Parameters

[in]	l	The left-hand Vector.
[in]	r	The right-hand Vector.

Returns

A new Vector, c, where c[i]==(l[i]*r[i]).

References N.

operator*() [12/12]

template<typename T , std::size_t N, typename U >

Vector<T,N> madness::operator*	(	Vector< T, N >	l,
		U	r
	)

Scale a Vector.

Multiply each Vector element by the scalar value r.

Template Parameters

T	The left-hand Vector element type.
N	The Vector size.
U	The right-hand scalar type.

Parameters

[in]	l	The left-hand Vector.
[in]	r	The right-hand scalar value to be multiplied by the Vector elements.

Returns

A new Vector, c, where c[i]==(l[i]*r).

References N.

operator+() [1/9]

template<typename L , typename R , std::size_t NDIM>

Function<TENSOR_RESULT_TYPE(L,R), NDIM> madness::operator+	(	const Function< L, NDIM > &	left,
		const Function< R, NDIM > &	right
	)

Adds two functions with the new result being of type TensorResultType<L,R>

Using operator notation forces a global fence after each operation

References add(), madness::Function< T, NDIM >::compress(), gaxpy_oop_reconstructed(), madness::Function< T, NDIM >::is_compressed(), NDIM, madness::Function< T, NDIM >::reconstruct(), VERIFY_TREE, and madness::Function< T, NDIM >::verify_tree().

operator+() [2/9]

template<typename T , typename R , std::size_t NDIM>

IsSupported<TensorTypeData<R>, Function<TENSOR_RESULT_TYPE(T,R),NDIM> >::type madness::operator+	(	const Function< T, NDIM > &	f,
		R	r
	)

References f, and R.

operator+() [3/9]

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::operator+	(	const Function< T, NDIM > &	lhs,
		const std::vector< Function< T, NDIM > > &	rhs
	)

result[i] = a + b[i]

References gaxpy_oop().

operator+() [4/9]

template<typename T , std::size_t NDIM>

std::vector<CCPairFunction<T,NDIM> > madness::operator+	(	const std::vector< CCPairFunction< T, NDIM >>	c1,
		const std::vector< CCPairFunction< T, NDIM > > &	c2
	)

operator+() [5/9]

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::operator+	(	const std::vector< Function< T, NDIM > > &	lhs,
		const Function< T, NDIM > &	rhs
	)

result[i] = a[i] + b

References gaxpy_oop().

operator+() [6/9]

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::operator+	(	const std::vector< Function< T, NDIM > > &	lhs,
		const std::vector< Function< T, NDIM >> &	rhs
	)

result[i] = a[i] + b[i]

References gaxpy_oop(), and MADNESS_CHECK.

operator+() [7/9]

template<typename T , typename R , std::size_t NDIM>

IsSupported<TensorTypeData<R>, Function<TENSOR_RESULT_TYPE(T,R),NDIM> >::type madness::operator+	(	R	r,
		const Function< T, NDIM > &	f
	)

References f, and R.

operator+() [8/9]

template<typename T , std::size_t N, typename U >

Vector<T,N> madness::operator+	(	Vector< T, N >	l,
		const Vector< U, N > &	r
	)

Add (element-wise) two Vectors.

Do an element-wise addition of l and r and return the result in a new Vector.

Template Parameters

T	The left-hand Vector element type.
N	The Vector size.
U	The right-hand Vector element type.

Parameters

[in]	l	The left-hand Vector.
[in]	r	The right-hand Vector.

Returns

A new Vector, c, where c[i]==(l[i]+r[i]).

References N.

operator+() [9/9]

template<typename T , std::size_t N, typename U >

Vector<T,N> madness::operator+	(	Vector< T, N >	l,
		U	r
	)

Add a scalar to a Vector.

Add the scalar value r to each Vector element.

Template Parameters

T	The left-hand Vector element type.
N	The Vector size.
U	The right-hand scalar type.

Parameters

[in]	l	The left-hand Vector.
[in]	r	The right-hand scalar value to be added to the Vector.

Returns

A new Vector, c, where c[i]==(l[i]+r).

References N.

operator+=() [1/3]

template<typename T , std::size_t NDIM>

std::vector<CCPairFunction<T,NDIM> >& madness::operator+=	(	std::vector< CCPairFunction< T, NDIM > > &	lhs,
		const CCPairFunction< T, NDIM > &	rhs
	)

operator+=() [2/3]

template<typename T , std::size_t NDIM>

std::vector<CCPairFunction<T,NDIM> >& madness::operator+=	(	std::vector< CCPairFunction< T, NDIM > > &	rhs,
		const std::vector< CCPairFunction< T, NDIM > > &	lhs
	)

operator+=() [3/3]

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::operator+=	(	std::vector< Function< T, NDIM > > &	lhs,
		const std::vector< Function< T, NDIM > > &	rhs
	)

References gaxpy(), and MADNESS_CHECK.

operator-() [1/9]

template<typename L , typename R , std::size_t NDIM>

Function<TENSOR_RESULT_TYPE(L,R), NDIM> madness::operator-	(	const Function< L, NDIM > &	left,
		const Function< R, NDIM > &	right
	)

Subtracts two functions with the new result being of type TensorResultType<L,R>

Using operator notation forces a global fence after each operation

References madness::Function< T, NDIM >::compress(), gaxpy_oop_reconstructed(), madness::Function< T, NDIM >::is_compressed(), NDIM, PROFILE_FUNC, madness::Function< T, NDIM >::reconstruct(), and sub().

operator-() [2/9]

template<typename T , typename R , std::size_t NDIM>

IsSupported<TensorTypeData<R>, Function<TENSOR_RESULT_TYPE(T,R),NDIM> >::type madness::operator-	(	const Function< T, NDIM > &	f,
		R	r
	)

References f, and R.

operator-() [3/9]

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::operator-	(	const Function< T, NDIM > &	lhs,
		const std::vector< Function< T, NDIM > > &	rhs
	)

result[i] = a - b[i]

References gaxpy_oop().

operator-() [4/9]

template<typename T , std::size_t NDIM>

std::vector<CCPairFunction<T,NDIM> > madness::operator-	(	const std::vector< CCPairFunction< T, NDIM >>	c1,
		const std::vector< CCPairFunction< T, NDIM > > &	c2
	)

operator-() [5/9]

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::operator-	(	const std::vector< Function< T, NDIM > > &	lhs,
		const Function< T, NDIM > &	rhs
	)

result[i] = a[i] - b

References gaxpy_oop().

operator-() [6/9]

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::operator-	(	const std::vector< Function< T, NDIM > > &	lhs,
		const std::vector< Function< T, NDIM > > &	rhs
	)

result[i] = a[i] - b[i]

References gaxpy_oop(), and MADNESS_CHECK.

operator-() [7/9]

template<typename T , typename R , std::size_t NDIM>

IsSupported<TensorTypeData<R>, Function<TENSOR_RESULT_TYPE(T,R),NDIM> >::type madness::operator-	(	R	r,
		const Function< T, NDIM > &	f
	)

References f, and R.

operator-() [8/9]

template<typename T , std::size_t N, typename U >

Vector<T,N> madness::operator-	(	Vector< T, N >	l,
		const Vector< U, N > &	r
	)

Subtract (element-wise) two Vectors.

Do an element-wise subtraction of l and r and return the result in a new Vector.

Template Parameters

T	The left-hand Vector element type.
N	The Vector size.
U	The right-hand Vector element type.

Parameters

[in]	l	The left-hand Vector.
[in]	r	The right-hand Vector.

Returns

A new Vector, c, where c[i]==(l[i]-r[i]).

References N.

operator-() [9/9]

template<typename T , std::size_t N, typename U >

Vector<T,N> madness::operator-	(	Vector< T, N >	l,
		U	r
	)

Subtract a scalar from a Vector.

Subtract the scalar value r from the Vector elements l[i].

Template Parameters

T	The left-hand Vector element type.
N	The Vector size.
U	The right-hand scalar type.

Parameters

[in]	l	The left-hand Vector.
[in]	r	The right-hand scalar value to be added to the Vector.

Returns

A new Vector, c, where c[i]==(l[i]-r).

References N.

operator-=() [1/2]

template<typename T , std::size_t NDIM>

std::vector<CCPairFunction<T,NDIM> >& madness::operator-=	(	std::vector< CCPairFunction< T, NDIM > > &	rhs,
		const std::vector< CCPairFunction< T, NDIM > > &	lhs
	)

operator-=() [2/2]

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::operator-=	(	std::vector< Function< T, NDIM > > &	lhs,
		const std::vector< Function< T, NDIM > > &	rhs
	)

References gaxpy(), and MADNESS_CHECK.

operator<<() [1/24]

std::ostream& madness::operator<< ( std::ostream &  os, const DistributedID &  did  )

inline

Overload redirect to std::ostream to be discoverable via ADL.

References madness::operators::operator<<().

operator<<() [2/24]

std::ostream & madness::operator<<	(	std::ostream &	os,
		const EnergyType &	en
	)

References HYLLERAAS_ENERGYTYPE, PROJECTED_ENERGYTYPE, and UNKNOWN_ENERGYTYPE.

operator<<() [3/24]

std::ostream & madness::operator<<	(	std::ostream &	os,
		const GuessType &	en
	)

References EMPTY_GUESSTYPE, EXOP_GUESSTYPE, FROM_FILE_GUESSTYPE, PARTIAL_WAVE_GUESSTYPE, PREDEFINED_GUESSTYPE, PSI4_GUESSTYPE, SCF_GUESSTYPE, and UNKNOWN_GUESSTYPE.

operator<<() [4/24]

template<std::size_t N = 1>

std::ostream& madness::operator<<	(	std::ostream &	os,
		const OpType	type
	)

operator type to string

References name(), OT_BSH, OT_F12, OT_F212, OT_F2G12, OT_FG12, OT_G12, OT_GAUSS, OT_ONE, OT_SLATER, OT_UNDEFINED, and type().

operator<<() [5/24]

std::ostream & madness::operator<<	(	std::ostream &	os,
		const PairType &	en
	)

References ALL_PAIRTYPE, CISPD_PAIRTYPE, MP2_PAIRTYPE, NONE_PAIRTYPE, and UNKNOWN_PAIRTYPE.

operator<<() [6/24]

template<std::size_t PDIM>

std::ostream& madness::operator<<	(	std::ostream &	os,
		const particle< PDIM > &	p
	)

References p().

operator<<() [7/24]

std::ostream& madness::operator<<	(	std::ostream &	os,
		const permutation &	p
	)

References p().

operator<<() [8/24]

template<typename Key , typename Tag >

std::ostream& madness::operator<< ( std::ostream &  os, const ProcessKey< Key, Tag > &  key  )

inline

Overload redirect to std::ostream to be discoverable via ADL.

References madness::ProcessKey< Key, Tag >::key(), and madness::ProcessKey< Key, Tag >::proc().

operator<<() [9/24]

template<typename Key , typename Tag >

std::ostream& madness::operator<< ( std::ostream &  os, const TaggedKey< Key, Tag > &  key  )

inline

Overload redirect to std::ostream to be discoverable via ADL.

References madness::TaggedKey< Key, Tag >::key().

operator<<() [10/24]

template<std::size_t NDIM = 1>

std::ostream& madness::operator<<	(	std::ostream &	os,
		const TreeState	treestate
	)

References compressed, MADNESS_EXCEPTION, nonstandard, nonstandard_after_apply, nonstandard_with_leaves, on_demand, reconstructed, redundant, redundant_after_merge, and unknown.

operator<<() [11/24]

template<typename T >

std::ostream& madness::operator<<	(	std::ostream &	out,
		const Future< T > &	f
	)

Human readable printing of a Future to a stream.

Stream output operator for a future.

Template Parameters

T	The type of future.

Parameters

[in,out]	out	The output stream.
[in]	f	The future.

Returns

The output stream.

Todo:

Brief description needed.

Todo:

Descriptions needed.

Template Parameters

T	Description needed.

Parameters

[in,out]	The	output stream.
[in]	f	The future to be output.

Returns

The output stream.

operator<<() [12/24]

template<>

std::ostream& madness::operator<<	(	std::ostream &	out,
		const Future< void > &	f
	)

Stream output operator for a void future.

Parameters

[in,out]	out	The output stream.
[in]	f	The future.

Returns

The output stream.

operator<<() [13/24]

std::ostream& madness::operator<<	(	std::ostream &	out,
		const MadnessException &	e
	)

Enables easy printing of a MadnessException.

Parameters

[in,out]	out	Output stream.
[in]	e	The MadnessException.

Returns

The output stream.

References e().

operator<<() [14/24]

std::ostream & madness::operator<<	(	std::ostream &	s,
		const Atom &	atom
	)

References madness::Atom::atomic_number, madness::Atom::q, madness::Atom::x, madness::Atom::y, and madness::Atom::z.

operator<<() [15/24]

std::ostream& madness::operator<<	(	std::ostream &	s,
		const AtomicBasis &	c
	)

References c.

operator<<() [16/24]

std::ostream& madness::operator<<	(	std::ostream &	s,
		const AtomicBasisFunction &	a
	)

References a.

operator<<() [17/24]

template<std::size_t NDIM>

static std::ostream& madness::operator<< ( std::ostream &  s, const BoundaryConditions< NDIM > &  bc  )

inlinestatic

References madness::BoundaryConditions< NDIM >::code_as_string(), d(), and NDIM.

operator<<() [18/24]

template<typename T , std::size_t NDIM>

std::ostream& madness::operator<<	(	std::ostream &	s,
		const CoeffTracker< T, NDIM > &	ct
	)

References madness::CoeffTracker< T, NDIM >::get_impl(), madness::CoeffTracker< T, NDIM >::is_leaf(), and madness::CoeffTracker< T, NDIM >::key().

operator<<() [19/24]

std::ostream& madness::operator<<	(	std::ostream &	s,
		const ContractedGaussianShell &	c
	)

References bufsize, c, and p().

operator<<() [20/24]

template<typename T , std::size_t NDIM>

std::ostream& madness::operator<<	(	std::ostream &	s,
		const FunctionNode< T, NDIM > &	node
	)

References madness::FunctionNode< T, NDIM >::coeff(), madness::GenTensor< T >::dim(), e(), madness::FunctionNode< T, NDIM >::get_dnorm(), madness::FunctionNode< T, NDIM >::get_norm_tree(), madness::FunctionNode< T, NDIM >::get_snorm(), madness::FunctionNode< T, NDIM >::has_children(), madness::FunctionNode< T, NDIM >::has_coeff(), madness::GenTensor< T >::is_assigned(), madness::detail::norm(), madness::GenTensor< T >::normf(), and madness::GenTensor< T >::rank().

operator<<() [21/24]

template<std::size_t NDIM>

std::ostream& madness::operator<<	(	std::ostream &	s,
		const Key< NDIM > &	key
	)

References KeyChildIterator::key(), madness::Key< NDIM >::level(), and madness::Key< NDIM >::translation().

operator<<() [22/24]

template<typename T >

static std::ostream& madness::operator<< ( std::ostream &  s, const SRConf< T > &  sr  )

inlinestatic

operator<<() [23/24]

static std::ostream& madness::operator<< ( std::ostream &  s, const TensorType &  tt  )

inlinestatic

References TT_2D, TT_FULL, and TT_TENSORTRAIN.

operator<<() [24/24]

std::ostream & madness::operator<<	(	std::ostream &	stream,
		const Slice &	s
	)

operator==() [1/2]

bool madness::operator== ( const DistributedID &  left, const DistributedID &  right  )

inline

Distributed ID equality comparison operator.

Parameters

[in]	left	The first key to compare.
[in]	right	The second key to compare.

Returns

True when first and second of left and right are equal; otherwise false.

operator==() [2/2]

bool madness::madness::operator==	(	const ResponseParameters &	p1,
		const ResponseParameters &	p2
	)

References madness::QCCalculationParametersBase::to_json().

operator>>() [1/5]

std::istream & madness::operator>>	(	std::istream &	is,
		EnergyType &	en
	)

References HYLLERAAS_ENERGYTYPE, MADNESS_EXCEPTION, PROJECTED_ENERGYTYPE, transform(), and UNKNOWN_ENERGYTYPE.

operator>>() [2/5]

std::istream & madness::operator>>	(	std::istream &	is,
		GuessType &	en
	)

References EMPTY_GUESSTYPE, EXOP_GUESSTYPE, FROM_FILE_GUESSTYPE, MADNESS_EXCEPTION, PARTIAL_WAVE_GUESSTYPE, PREDEFINED_GUESSTYPE, PSI4_GUESSTYPE, SCF_GUESSTYPE, transform(), and UNKNOWN_GUESSTYPE.

operator>>() [3/5]

std::istream & madness::operator>>	(	std::istream &	is,
		PairType &	en
	)

References ALL_PAIRTYPE, CISPD_PAIRTYPE, MADNESS_EXCEPTION, MP2_PAIRTYPE, NONE_PAIRTYPE, transform(), and UNKNOWN_PAIRTYPE.

operator>>() [4/5]

template<typename Q , typename T >

std::istream& madness::operator>>	(	std::istream &	is,
		std::pair< T, Q > &	p
	)

inverting the print method from print.h for std::vector TODO: move this where it belongs (into print.h ??)

References c, p(), print(), Q(), and T().

operator>>() [5/5]

template<typename T , typename A = std::allocator<T>>

std::istream& madness::operator>>	(	std::istream &	is,
		std::vector< T, A > &	v
	)

inverting the print method from print.h for std::vector TODO: move this where it belongs (into print.h ??)

References c, check_for_inf(), print(), T(), and v.

orgqr() [1/5]

template void madness::orgqr	(	Tensor< complex_real4 > &	A,
		const Tensor< complex_real4 > &	tau
	)

orgqr() [2/5]

template void madness::orgqr	(	Tensor< double > &	A,
		const Tensor< double > &	tau
	)

orgqr() [3/5]

template void madness::orgqr	(	Tensor< double_complex > &	A,
		const Tensor< double_complex > &	tau
	)

orgqr() [4/5]

template void madness::orgqr	(	Tensor< float > &	A,
		const Tensor< float > &	tau
	)

orgqr() [5/5]

template<typename T >

void madness::orgqr	(	Tensor< T > &	A,
		const Tensor< T > &	tau
	)

reconstruct the orthogonal matrix Q (e.g. from QR factorization)

orgqr generates an M-by-N complex matrix Q with orthonormal columns

Parameters

[in,out]	A	On entry, the i-th column must contain the vector which defines the elementary reflector H(i), for i = 1,2,...,k, as returned by DGEQRF in the first k columns of its array argument A. On exit, the M-by-N matrix Q.
[in]	tau	TAU(i) must contain the scalar factor of the elementary reflector H(i), as returned by DGEQRF.

which is defined as the first N columns of a product of K elementary reflectors of order M Q = H(1) H(2) . . . H(k) as returned by ZGEQRF.

References k, m, mask_info(), orgqr_(), madness::Tensor< T >::ptr(), madness::BaseTensor::size(), T(), TENSOR_ASSERT, and transpose().

ortho3()

template<typename T >

void madness::ortho3	(	Tensor< T > &	x,
		Tensor< T > &	y,
		Tensor< typename Tensor< T >::scalar_type > &	weights,
		const double &	thresh
	)

sophisticated version of ortho2

after calling this we will have an optimally rank-reduced representation with the left and right subspaces being bi-orthogonal and normalized; outline of the algorithm:

• canonical orthogonalization of the subspaces (screen for small eigenvalues)
• SVD of the modified overlap (incorporates the roots of eigenvalues) operation count is O(kr^2 + r^3)

Parameters

[in,out]	x	normalized left subspace
[in,out]	y	normalize right subspace
[in,out]	weights	weights
[in]	thresh	truncation threshold

References _(), std::abs(), madness::Tensor< T >::absmax(), madness::Tensor< T >::clear(), madness::BaseTensor::dim(), e1(), inner(), MADNESS_ASSERT, madness::SRConf< T >::max_sigma(), madness::Tensor< T >::screen(), madness::BaseTensor::size(), svd(), syev(), thresh, wall_time(), and weights.

Referenced by madness::SVDTensor< T >::orthonormalize().

ortho5()

template<typename T >

void madness::ortho5	(	Tensor< T > &	x1,
		Tensor< T > &	y1,
		Tensor< typename Tensor< T >::scalar_type > &	w1,
		const Tensor< T > &	x2,
		const Tensor< T > &	y2,
		const Tensor< typename Tensor< T >::scalar_type > &	w2,
		const double &	thresh
	)

specialized version of ortho3

does the same as ortho3, but takes two bi-orthonormal configs as input and saves on the inner product. Result will be written onto the first config

Parameters

[in,out]	x1	left subspace, will hold the result on exit
[in,out]	y1	right subspace, will hold the result on exit
[in]	x2	left subspace, will be accumulated onto x1
[in]	y2	right subspace, will be accumulated onto y1

References _(), std::abs(), madness::Tensor< T >::absmax(), madness::Tensor< T >::clear(), copy(), madness::BaseTensor::dim(), e1(), madness::Tensor< T >::emul(), inner(), inner_result(), max, outer(), residual(), s0, madness::Tensor< T >::screen(), svd(), syev(), thresh, transpose(), and wall_time().

Referenced by madness::SRConf< T >::add_SVD().

orthonormalize()

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::orthonormalize

(

const std::vector< Function< T, NDIM > > &

vf_in

)

orthonormalize the vectors

References std::abs(), copy(), matrix_inner(), max, normalize(), Q(), Q2(), transform(), and truncate().

Referenced by madness::SVDTensor< T >::divide_and_conquer_reduce(), iterate(), main(), and run().

orthonormalize_canonical() [1/2]

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::orthonormalize_canonical	(	const std::vector< Function< T, NDIM > > &	v,
		const double	lindep
	)

convenience routine for canonical routine for symmetric orthonormalization (see e.g. Szabo/Ostlund) overlap matrix is calculated

Parameters

[in]

the

vector to orthonormalize

References matrix_inner(), orthonormalize_canonical(), and v.

orthonormalize_canonical() [2/2]

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::orthonormalize_canonical	(	const std::vector< Function< T, NDIM > > &	v,
		const Tensor< T > &	ovlp,
		double	lindep
	)

canonical orthonormalization (see e.g. Szabo/Ostlund)

Parameters

[in]	the	vector to orthonormalize
[in]	overlap	matrix
[in]	lindep	linear dependency threshold relative to largest eigenvalue

References _(), lo, MADNESS_ASSERT, syev(), transform(), and v.

Referenced by madness::Zcis::make_guess(), madness::LowRankFunction< T, NDIM, LDIM >::orthonormalize(), and orthonormalize_canonical().

orthonormalize_cd() [1/2]

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::orthonormalize_cd

(

const std::vector< Function< T, NDIM > > &

v

)

convenience routine for cholesky orthonormalization without pivoting

Parameters

[in]	the	vector to orthonormalize
[in]	overlap	matrix

References matrix_inner(), orthonormalize_cd(), and v.

orthonormalize_cd() [2/2]

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::orthonormalize_cd	(	const std::vector< Function< T, NDIM > > &	v,
		Tensor< T > &	ovlp
	)

cholesky orthonormalization without pivoting

Parameters

[in]	the	vector to orthonormalize
[in]	overlap	matrix, destroyed on return!

References cholesky(), inverse(), L, transform(), transpose(), and v.

Referenced by orthonormalize_cd().

orthonormalize_rrcd() [1/3]

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::orthonormalize_rrcd	(	const std::vector< Function< T, NDIM > > &	v,
		const double	tol
	)

convenience routine for orthonromalize_cholesky: computes the overlap matrix and then calls orthonromalize_cholesky

Parameters

[in]	the	vector to orthonormalize
[in]	tolerance	for numerical rank reduction

References matrix_inner(), orthonormalize_rrcd(), and v.

orthonormalize_rrcd() [2/3]

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::orthonormalize_rrcd	(	const std::vector< Function< T, NDIM > > &	v,
		Tensor< T > &	ovlp,
		const double	tol,
		Tensor< integer > &	piv,
		int &	rank
	)

Parameters

[in]	the	vector to orthonormalize
[in]	overlap	matrix, will be destroyed on return!
[in]	tolerance	for numerical rank reduction
[out]	pivoting	vector, no allocation on input needed
[out]	rank

Returns

orthonrormalized vector (may or may not be truncated)

References inverse(), L, rr_cholesky(), transform(), transpose(), and v.

Referenced by madness::F12Potentials::compute_hylleraas_f12_energies(), madness::PNO::initialize_pairs(), madness::TDHF::make_guess_from_initial_diagonalization(), madness::LowRankFunction< T, NDIM, LDIM >::orthonormalize(), orthonormalize_rrcd(), and madness::LowRankFunctionFactory< T, NDIM, LDIM >::project().

orthonormalize_rrcd() [3/3]

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::orthonormalize_rrcd	(	const std::vector< Function< T, NDIM > > &	v,
		Tensor< T >	ovlp,
		const double	tol
	)

convenience routine for orthonromalize_cholesky: orthonromalize_cholesky without information on pivoting and rank

Parameters

[in]	the	vector to orthonormalize
[in]	overlap	matrix
[in]	tolerance	for numerical rank reduction

References orthonormalize_rrcd(), and v.

orthonormalize_symmetric() [1/2]

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::orthonormalize_symmetric

(

const std::vector< Function< T, NDIM > > &

v

)

convenience routine for symmetric orthonormalization (see e.g. Szabo/Ostlund) overlap matrix is calculated

Parameters

[in]

the

vector to orthonormalize

References matrix_inner(), orthonormalize_symmetric(), and v.

orthonormalize_symmetric() [2/2]

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::orthonormalize_symmetric	(	const std::vector< Function< T, NDIM > > &	v,
		const Tensor< T > &	ovlp
	)

symmetric orthonormalization (see e.g. Szabo/Ostlund)

Parameters

[in]	the	vector to orthonormalize
[in]	overlap	matrix

References inner(), syev(), transform(), transpose(), and v.

Referenced by orthonormalize_symmetric(), madness::MolecularOrbitals< T, NDIM >::project_ao(), test_projector(), and test_Q12_projector().

outer() [1/4]

template<class T , class Q >

GenTensor<TENSOR_RESULT_TYPE(T,Q)> madness::outer	(	const GenTensor< T > &	t1,
		const GenTensor< Q > &	t2,
		const TensorArgs	final_tensor_args = TensorArgs(-1.0,TT_2D)
	)

outer product of two Tensors, yielding a low rank tensor

do the outer product of two tensors; distinguish these tensortype cases by the use of final_tensor_type

• full x full -> full
• full x full -> SVD ( default )
• TensorTrain x TensorTrain -> TensorTrain all other combinations are currently invalid.

References madness::GenTensor< T >::dim(), madness::BaseTensor::dim(), madness::GenTensor< T >::full_tensor_copy(), madness::GenTensor< T >::get_tensor(), madness::GenTensor< T >::get_tensortrain(), madness::GenTensor< T >::is_full_tensor(), is_same_tensor_type(), madness::GenTensor< T >::is_tensortrain(), k, MADNESS_ASSERT, MADNESS_EXCEPTION, madness::BaseTensor::ndim(), madness::GenTensor< T >::ndim(), outer(), Q(), madness::Tensor< T >::reshape(), madness::BaseTensor::size(), T(), TENSOR_RESULT_TYPE(), TT_2D, TT_FULL, TT_TENSORTRAIN, and weights.

outer() [2/4]

template<typename projT , typename projQ >

std::enable_if<std::is_base_of<ProjectorBase,projT>::value, OuterProjector<projT,projQ> >::type madness::outer	(	const projT &	p0,
		const projQ &	p1
	)

Referenced by madness::Derivative< T, NDIM >::do_diff2b(), madness::SRConf< T >::emul(), QuasiNewton::hessian_update_sr1(), madness::QuasiNewton::hessian_update_sr1(), madness::TwoElectronInterface< T, NDIM >::make_coeff(), madness::FunctionImpl< T, NDIM >::Vphi_op_NS< opT, LDIM >::make_sum_coeffs(), madness::FunctionImpl< T, NDIM >::multiply(), madness::SRConf< T >::normf(), madness::FunctionImpl< T, NDIM >::hartree_op< LDIM, leaf_opT >::operator()(), madness::FunctionImpl< T, NDIM >::recursive_apply_op< opT, LDIM >::operator()(), madness::FunctionImpl< T, NDIM >::pointwise_multiplier< LDIM >::operator()(), madness::FunctionImpl< T, NDIM >::do_inner_local_on_demand< R >::operator()(), ortho5(), outer(), Test7(), test_projector_outer(), and madness::SRConf< T >::trace().

outer() [3/4]

template<class T , class Q >

GenTensor<TENSOR_RESULT_TYPE(T,Q)> madness::outer	(	const Tensor< T > &	lhs2,
		const Tensor< Q > &	rhs2,
		const TensorArgs	final_tensor_args
	)

outer product of two Tensors, yielding a low rank tensor

References MADNESS_EXCEPTION, outer(), Q(), T(), TENSOR_RESULT_TYPE(), madness::TensorArgs::thresh, madness::TensorArgs::tt, TT_2D, TT_FULL, and TT_TENSORTRAIN.

outer() [4/4]

template<class T , class Q >

TensorTrain<TENSOR_RESULT_TYPE(T,Q)> madness::outer	(	const TensorTrain< T > &	t1,
		const TensorTrain< Q > &	t2
	)

computes the outer product of two tensors

result(i,j,...,p,q,...) = left(i,k,...)*right(p,q,...)

Returns

Returns a new tensor train

References copy(), madness::TensorTrain< T >::core, madness::BaseTensor::dim(), k1, k2, madness::BaseTensor::ndim(), Q(), T(), TENSOR_RESULT_TYPE(), and madness::TensorTrain< T >::zero_rank.

outer_result()

template<class T >

void madness::outer_result	(	const Tensor< T > &	left,
		const Tensor< T > &	right,
		Tensor< T > &	result
	)

Outer product ... result(i,j,...,p,q,...) = left(i,k,...)*right(p,q,...)

accumulate into result, no allocation is performed

References madness::TensorIterator< T, Q, R >::_p0, madness::TensorIterator< T, Q, R >::_s0, madness::TensorIterator< T, Q, R >::dimj, madness::Tensor< T >::end(), madness::BaseTensor::ndim(), p(), madness::Tensor< T >::ptr(), madness::TensorIterator< T, Q, R >::reset(), T(), TENSOR_ASSERT, and madness::Tensor< T >::unary_iterator().

Referenced by madness::SRConf< T >::emul(), and outer().

parity()

static int madness::parity ( int  i )

inlinestatic

Return +1 if i is even, -1 if i is odd ... perverse no if-test form.

Referenced by read_data().

partial_mul()

template<typename T , std::size_t NDIM, std::size_t LDIM>

std::vector<Function<T,NDIM> > madness::partial_mul	(	const Function< T, NDIM >	f,
		const std::vector< Function< T, LDIM > >	g,
		const int	particle
	)

multiply a high-dimensional function with a low-dimensional function

Parameters

[in]	f	NDIM function of NDIM dimensions
[in]	g	LDIM function of LDIM
[in]	v	dimension indices of f to multiply

Returns

h[i](0,1,2,3) = f(0,1,2,3) * g[i](1,2,3) for v={1,2,3}

References madness::FunctionImpl< T, NDIM >::change_tree_state(), f, madness::WorldGopInterface::fence(), g, madness::World::gop, make_redundant(), redundant, and madness::FunctionImpl< T, NDIM >::undo_redundant().

periodic_derivative()

template<typename T , std::size_t NDIM>

Derivative<T,NDIM> madness::periodic_derivative	(	World &	world,
		int	axis,
		int	k = FunctionDefaults<NDIM>::get_k()
	)

Conveinence function returning derivative operator with periodic boundary conditions.

References axis, BC_PERIODIC, and k.

PeriodicBSHOp()

template<typename Q , int NDIM>

SeparatedConvolution<Q, NDIM> madness::PeriodicBSHOp	(	World &	world,
		double	mu,
		long	k,
		double	lo,
		double	eps,
		Tensor< double >	L
	)

References c, madness::BaseTensor::dim(), k, L, lo, mu, NDIM, and pow().

PeriodicBSHOperator3D()

static SeparatedConvolution<double_complex,3> madness::PeriodicBSHOperator3D ( World &  world, Vector< double, 3 >  args, double  mu, double  lo, double  eps, const BoundaryConditions< 3 > &  bc = FunctionDefaults<3>::get_bc(), int  k = FunctionDefaults<3>::get_k()  )

inlinestatic

Factory function generating separated kernel for convolution with exp(-mu*r)/(4*pi*r) in 3D.

References BC_PERIODIC, madness::GFit< T, NDIM >::BSHFit(), fit(), madness::FunctionDefaults< NDIM >::get_cell_width(), k, lo, madness::Tensor< T >::max(), mu, and madness::Tensor< T >::normf().

Referenced by apply_periodic_bsh().

PeriodicBSHOperatorPtr3D()

static SeparatedConvolution<double_complex,3>* madness::PeriodicBSHOperatorPtr3D ( World &  world, Vector< double, 3 >  args, double  mu, double  lo, double  eps, const BoundaryConditions< 3 > &  bc = FunctionDefaults<3>::get_bc(), int  k = FunctionDefaults<3>::get_k()  )

inlinestatic

Factory function generating separated kernel for convolution with exp(-mu*r)/(4*pi*r) in 3D.

References BC_PERIODIC, madness::GFit< T, NDIM >::BSHFit(), fit(), madness::FunctionDefaults< NDIM >::get_cell_width(), k, lo, madness::Tensor< T >::max(), mu, and madness::Tensor< T >::normf().

Referenced by KPeriodicBSHOperator::apply().

PeriodicBSHOpPtr()

template<typename Q , int NDIM>

SeparatedConvolution<Q, NDIM>* madness::PeriodicBSHOpPtr	(	World &	world,
		double	mu,
		long	k,
		double	lo,
		double	eps,
		Tensor< double >	L
	)

References c, madness::BaseTensor::dim(), k, L, lo, mu, NDIM, and pow().

PeriodicCoulombOp()

template<typename Q , int NDIM>

SeparatedConvolution<Q, NDIM> madness::PeriodicCoulombOp	(	World &	world,
		long	k,
		double	lo,
		double	eps,
		Tensor< double >	L
	)

References acut1e_6, c, madness::BaseTensor::dim(), k, L, lo, NDIM, pow(), and WST_PI.

PeriodicCoulombOpPtr()

template<typename Q , int NDIM>

SeparatedConvolution<Q, NDIM>* madness::PeriodicCoulombOpPtr	(	World &	world,
		long	k,
		double	lo,
		double	eps,
		Tensor< double >	L
	)

References acut1e_6, c, madness::BaseTensor::dim(), k, L, lo, NDIM, pow(), and WST_PI.

PeriodicHFExchangeOperator()

static SeparatedConvolution<double_complex,3> madness::PeriodicHFExchangeOperator ( World &  world, Vector< double, 3 >  args, double  lo, double  eps, const BoundaryConditions< 3 > &  bc = FunctionDefaults<3>::get_bc(), int  k = FunctionDefaults<3>::get_k()  )

inlinestatic

Factory function generating separated kernel for convolution with 1/r in 3D.

References BC_PERIODIC, madness::GFit< T, NDIM >::CoulombFit(), fit(), madness::FunctionDefaults< NDIM >::get_cell_width(), k, lo, madness::Tensor< T >::max(), and madness::Tensor< T >::normf().

Referenced by madness::Solver< T, NDIM >::apply_hf_exchange(), and madness::Solver< T, NDIM >::apply_hf_exchange4().

pg_c2()

static pg_operator madness::pg_c2 ( )

inlinestatic

Referenced by check_operator_multiplications_2d().

pg_c2x()

static pg_operator madness::pg_c2x ( )

inlinestatic

Referenced by check_multiplication_table_c2v(), check_operator_multiplications_3d(), madness::projector_irrep::make_d2_table(), madness::projector_irrep::make_d2h_table(), plot_symmetry_operators(), and test_orthogonalization().

pg_c2y()

static pg_operator madness::pg_c2y ( )

inlinestatic

Referenced by check_multiplication_table_c2v(), check_operator_multiplications_3d(), madness::projector_irrep::make_d2_table(), madness::projector_irrep::make_d2h_table(), plot_symmetry_operators(), and test_orthogonalization().

pg_c2z()

static pg_operator madness::pg_c2z ( )

inlinestatic

Referenced by check_multiplication_table_c2v(), check_operator_multiplications_3d(), madness::projector_irrep::make_c2_table(), madness::projector_irrep::make_c2h_table(), madness::projector_irrep::make_c2v_table(), madness::projector_irrep::make_d2_table(), madness::projector_irrep::make_d2h_table(), plot_symmetry_operators(), and test_orthogonalization().

pg_c4()

static pg_operator madness::pg_c4 ( )

inlinestatic

Referenced by check_operator_multiplications_2d(), and plot_symmetry_operators().

pg_c4x()

static pg_operator madness::pg_c4x ( )

inlinestatic

Referenced by check_multiplication_table_c2v(), check_operator_multiplications_3d(), plot_symmetry_operators(), and test_orthogonalization().

pg_c4y()

static pg_operator madness::pg_c4y ( )

inlinestatic

Referenced by check_multiplication_table_c2v(), check_operator_multiplications_3d(), plot_symmetry_operators(), and test_orthogonalization().

pg_c4z()

static pg_operator madness::pg_c4z ( )

inlinestatic

Referenced by check_multiplication_table_c2v(), check_operator_multiplications_3d(), plot_symmetry_operators(), and test_orthogonalization().

pg_identity()

static pg_operator madness::pg_identity ( )

inlinestatic

Referenced by check_multiplication_table_c2v(), check_operator_multiplications_2d(), check_operator_multiplications_3d(), madness::projector_irrep::make_c1_table(), madness::projector_irrep::make_c2_table(), madness::projector_irrep::make_c2h_table(), madness::projector_irrep::make_c2v_table(), madness::projector_irrep::make_ci_table(), madness::projector_irrep::make_cs_table(), madness::projector_irrep::make_d2_table(), madness::projector_irrep::make_d2h_table(), plot_symmetry_operators(), and test_orthogonalization().

pg_inversion()

static pg_operator madness::pg_inversion ( )

inlinestatic

Referenced by check_multiplication_table_c2v(), check_operator_multiplications_2d(), check_operator_multiplications_3d(), madness::projector_irrep::make_c2h_table(), madness::projector_irrep::make_ci_table(), madness::projector_irrep::make_d2h_table(), plot_symmetry_operators(), and test_orthogonalization().

pg_sigma_x()

static pg_operator madness::pg_sigma_x ( )

inlinestatic

Referenced by check_operator_multiplications_2d(), and plot_symmetry_operators().

pg_sigma_xy()

static pg_operator madness::pg_sigma_xy ( )

inlinestatic

Referenced by check_multiplication_table_c2v(), check_operator_multiplications_3d(), madness::projector_irrep::make_c2h_table(), madness::projector_irrep::make_cs_table(), madness::projector_irrep::make_d2h_table(), plot_symmetry_operators(), and test_orthogonalization().

pg_sigma_xz()

static pg_operator madness::pg_sigma_xz ( )

inlinestatic

Referenced by check_multiplication_table_c2v(), check_operator_multiplications_3d(), madness::projector_irrep::make_c2v_table(), madness::projector_irrep::make_d2h_table(), plot_symmetry_operators(), and test_orthogonalization().

pg_sigma_y()

static pg_operator madness::pg_sigma_y ( )

inlinestatic

Referenced by check_operator_multiplications_2d(), and plot_symmetry_operators().

pg_sigma_yz()

static pg_operator madness::pg_sigma_yz ( )

inlinestatic

Referenced by check_multiplication_table_c2v(), check_operator_multiplications_3d(), madness::projector_irrep::make_c2v_table(), madness::projector_irrep::make_d2h_table(), plot_symmetry_operators(), and test_orthogonalization().

phase()

static double madness::phase ( long  i )

inlinestatic

Referenced by madness::Solver< T, NDIM >::do_rhs(), madness::Solver< T, NDIM >::do_rhs_simple(), madness::Diamagnetic_potential_factor::factor_with_phase(), fixphases(), madness::Diamagnetic_potential_factor::make_fake_orbitals(), read_twoscale(), madness::Gnuplot::test(), test_chin_chen(), test_trotter(), and GaussianGuess< NDIM >::val().

plot()

template<size_t NDIM>

void madness::plot	(	const std::vector< Function< double, NDIM > > &	vf,
		const std::string &	name,
		const std::vector< std::string > &	header
	)

convenience to get plot_plane and plot_cubefile

References name().

Referenced by main(), madness::TDHF::plot(), CalculationParameters::print_info(), and CalculationParameters::read_file().

plot_along() [1/2]

template<size_t NDIM>

void madness::plot_along	(	World &	world,
		trajectory< NDIM >	traj,
		const Function< double, NDIM > &	function,
		std::string	filename
	)

References f, madness::WorldGopInterface::fence(), filename, madness::World::gop, MADNESS_EXCEPTION, madness::trajectory< NDIM >::npt, madness::trajectory< NDIM >::print_psdot(), and madness::World::rank().

Referenced by test_modified(), and test_recursive_application().

plot_along() [2/2]

template<size_t NDIM>

void madness::plot_along	(	World &	world,
		trajectory< NDIM >	traj,
		double(*)(const Vector< double, NDIM > &)	ff,
		std::string	filename
	)

References f, madness::WorldGopInterface::fence(), filename, madness::World::gop, MADNESS_EXCEPTION, madness::trajectory< NDIM >::npt, madness::trajectory< NDIM >::print_psdot(), and madness::World::rank().

plot_cubefile()

template<size_t NDIM>

std::enable_if<NDIM==3,void>::type madness::plot_cubefile	(	World &	world,
		const Function< double, NDIM > &	f,
		std::string	filename,
		std::vector< std::string >	molecular_info = std::vector<std::string>(),
		int	npoints = 100,
		double	zoom = 1.0
	)

References copy(), f, filename, k, MADNESS_EXCEPTION, madness::Tensor< T >::scale(), and madness::World::size().

plot_line() [1/6]

template<typename T , std::size_t NDIM>

void madness::plot_line	(	const char *	filename,
		int	npt,
		const Vector< double, NDIM > &	lo,
		const Vector< double, NDIM > &	hi,
		const Function< T, NDIM > &	f
	)

Generates ASCII file tabulating f(r) at npoints along line r=lo,...,hi.

The ordinate is distance from lo

References f, madness::WorldGopInterface::fence(), filename, madness::World::gop, h(), lo, MADNESS_EXCEPTION, NDIM, plot_line_print_value(), madness::World::rank(), and sum().

plot_line() [2/6]

template<typename T , typename U , std::size_t NDIM>

void madness::plot_line	(	const char *	filename,
		int	npt,
		const Vector< double, NDIM > &	lo,
		const Vector< double, NDIM > &	hi,
		const Function< T, NDIM > &	f,
		const Function< U, NDIM > &	g
	)

Generates ASCII file tabulating f(r) and g(r) at npoints along line r=lo,...,hi.

The ordinate is distance from lo

References f, madness::WorldGopInterface::fence(), filename, g, madness::World::gop, h(), lo, MADNESS_EXCEPTION, NDIM, plot_line_print_value(), madness::World::rank(), and sum().

plot_line() [3/6]

template<typename T , typename U , typename V , std::size_t NDIM>

void madness::plot_line	(	const char *	filename,
		int	npt,
		const Vector< double, NDIM > &	lo,
		const Vector< double, NDIM > &	hi,
		const Function< T, NDIM > &	f,
		const Function< U, NDIM > &	g,
		const Function< V, NDIM > &	a
	)

Generates ASCII file tabulating f(r), g(r), and a(r) at npoints along line r=lo,...,hi.

The ordinate is distance from lo

References a, f, madness::WorldGopInterface::fence(), filename, g, madness::World::gop, h(), lo, MADNESS_EXCEPTION, NDIM, plot_line_print_value(), madness::World::rank(), and sum().

plot_line() [4/6]

template<typename T , typename U , typename V , typename W , std::size_t NDIM>

void madness::plot_line	(	const char *	filename,
		int	npt,
		const Vector< double, NDIM > &	lo,
		const Vector< double, NDIM > &	hi,
		const Function< T, NDIM > &	f,
		const Function< U, NDIM > &	g,
		const Function< V, NDIM > &	a,
		const Function< W, NDIM > &	b
	)

Generates ASCII file tabulating f(r), g(r), a(r), b(r) at npoints along line r=lo,...,hi.

The ordinate is distance from lo

References a, b, f, madness::WorldGopInterface::fence(), filename, g, madness::World::gop, h(), lo, NDIM, plot_line_print_value(), madness::World::rank(), and sum().

plot_line() [5/6]

template<typename T , std::size_t NDIM>

void madness::plot_line	(	const char *	filename,
		int	npt,
		const Vector< double, NDIM > &	lo,
		const Vector< double, NDIM > &	hi,
		const std::vector< Function< T, NDIM >> &	vf
	)

The ordinate is distance from lo.

References f, madness::WorldGopInterface::fence(), filename, madness::World::gop, h(), lo, MADNESS_EXCEPTION, NDIM, madness::World::rank(), and sum().

plot_line() [6/6]

template<typename opT , std::size_t NDIM>

void madness::plot_line	(	World &	world,
		const char *	filename,
		int	npt,
		const Vector< double, NDIM > &	lo,
		const Vector< double, NDIM > &	hi,
		const opT &	op
	)

Generates ASCII file tabulating f(r) at npoints along line r=lo,...,hi.

The ordinate is distance from lo

References madness::WorldGopInterface::fence(), filename, madness::World::gop, h(), lo, MADNESS_EXCEPTION, NDIM, op(), plot_line_print_value(), madness::World::rank(), and sum().

Referenced by Plotter::dolineplot(), dostuff(), madness::Solver< T, NDIM >::initial_guess(), iterate(), main(), madness::smooth< T, NDIM >::make_plots(), madness::Nemo::make_plots(), SurfaceMoleculeInteraction::make_surfcharge(), SurfaceMoleculeInteraction::perturbed_molecular_pot(), plot(), Calculation::plot_z(), run(), madness::smooth< T, NDIM >::test_1d(), test_apply_push_1d(), test_gconv(), test_plot(), and test_smooth_maxout().

plot_line_print_value() [1/2]

static void madness::plot_line_print_value ( FILE *  f, double  v  )

inlinestatic

References f, and v.

plot_line_print_value() [2/2]

static void madness::plot_line_print_value ( FILE *  f, double_complex  v  )

inlinestatic

References f, imag(), real(), and v.

Referenced by DF::make_component_lineplots(), DF::make_component_logplots(), DF::make_density_lineplots(), plot_line(), and Calculation::plot_p().

plot_plane() [1/6]

template<size_t NDIM>

void madness::plot_plane	(	World &	world,
		const Function< double, NDIM > &	function,
		const std::string	name
	)

References name().

Referenced by madness::TDHF::get_tda_potential(), madness::BasisFunctions::guess_virtuals_internal(), main(), madness::smooth< T, NDIM >::make_plots(), madness::Nemo::make_plots(), madness::CC2::plot(), madness::CCFunction< T, NDIM >::plot(), Spinor::plot(), plot_plane(), and plot_symmetry_operators().

plot_plane() [2/6]

template<size_t NDIM>

void madness::plot_plane	(	World &	world,
		const Function< double, NDIM > &	function1,
		const Function< double, NDIM > &	function2,
		const Function< double, NDIM > &	function3,
		const std::string	name
	)

References name(), and plot_plane().

plot_plane() [3/6]

template<size_t NDIM>

void madness::plot_plane	(	World &	world,
		const Function< double, NDIM > &	function1,
		const Function< double, NDIM > &	function2,
		const std::string	name
	)

References name(), and plot_plane().

plot_plane() [4/6]

template<size_t NDIM, typename opT >

void madness::plot_plane	(	World &	world,
		const opT &	op,
		const std::string	name,
		const PlotParameters	param
	)

References c, f, filename, madness::FunctionDefaults< NDIM >::get_cell_width(), lo, MADNESS_ASSERT, MADNESS_EXCEPTION, name(), NDIM, op(), param, madness::World::rank(), scale(), and madness::World::size().

plot_plane() [5/6]

template<size_t NDIM>

void madness::plot_plane	(	World &	world,
		const std::vector< Function< double, NDIM > > &	vfunction,
		const std::string	name,
		const PlotParameters	param
	)

plot a 2-d slice of a given function and the according MRA structure

the plotting parameters are taken from the input file "input" and its data group "plot", e.g. plotting the xy plane around (0,0,0.7): plot plane x1 x2 zoom 2.0 npoints 100 origin 0.0 0.0 0.7 end

Parameters

[in]	world	the world
[in]	vfunction	the function to plot
[in]	name	the output name

References c, f, filename, madness::FunctionDefaults< NDIM >::get_cell_width(), lo, MADNESS_ASSERT, MADNESS_EXCEPTION, name(), NDIM, param, madness::World::rank(), scale(), and madness::World::size().

plot_plane() [6/6]

template<size_t NDIM>

void madness::plot_plane	(	World &	world,
		const std::vector< Function< double, NDIM > > &	vfunction,
		const std::string	name,
		const std::string	inputfile = "input"
	)

plot a 2-d slice of a given function and the according MRA structure FIXME: doesn't work for more than 1 rank the plotting parameters are taken from the input file "input" and its data group "plot", e.g. plotting the xy plane around (0,0,0.7): plot plane x1 x2 zoom 2.0 npoints 100 origin 0.0 0.0 0.7 end

Parameters

[in]	world	the world
[in]	vfunction	the function to plot
[in]	name	the output name

References f, filename, madness::FunctionDefaults< NDIM >::get_cell_width(), lo, MADNESS_ASSERT, MADNESS_EXCEPTION, name(), NDIM, position_stream_to_word(), print(), madness::World::rank(), scale(), and madness::World::size().

plotdx()

template<typename T , std::size_t NDIM>

void madness::plotdx	(	const Function< T, NDIM > &	f,
		const char *	filename,
		const Tensor< double > &	cell = FunctionDefaults<NDIM>::get_cell(),
		const std::vector< long > &	npt = std::vector<long>(NDIM,201L),
		bool	binary = true
	)

Writes an OpenDX format file with a cube/slice of points on a uniform grid.

Collective operation but only process 0 writes the file. By convention OpenDX files end in ".dx" but this choice is up to the user. The binary format is more compact and vastly faster to both write and load but is not as portable.

Now follow some brief tips about how to look at files inside OpenDX.

To view a 1D function file-selector-->import-->plot-->image.

To view a 2D function as a colored plane file-selector-->import-->autocolor-->image.

To view a 2D function as a 3D surface file-selector-->import-->rubbersheet-->image.

To view a 3D function as an isosurface file-selector-->import-->isosurface-->image.

To select the real/imaginary/absolute value of a complex number insert a compute element after the import.

References c, d(), dxprintvalue(), f, madness::WorldGopInterface::fence(), filename, madness::World::gop, h(), MADNESS_ASSERT, MADNESS_EXCEPTION, NDIM, PROFILE_FUNC, madness::Tensor< T >::ptr(), madness::World::rank(), madness::BaseTensor::size(), and T().

Referenced by madness::SCF::do_plots(), Plotter::dovolumeplot(), madness::Solver< T, NDIM >::initial_guess(), main(), madness::Solver< T, NDIM >::solve(), test_plot(), and testPeriodicCoulomb3d().

plotpovray()

template<typename T >

static void madness::plotpovray ( const Function< T, 3 > &  function, const char *  filename, const Tensor< double > &  cell = FunctionDefaults<3>::get_cell(), const std::vector< long > &  npt = std::vector<long>(3,201L)  )

static

Writes a Povray DF3 format file with a cube of points on a uniform grid.

Collective operation but only process 0 writes the file. By convention Povray files end in ".df3" but this choice is up to the user. The dynamic range of function values is mapped onto [0,1] and values stored in 16-bit fixed precision.

References d(), f, filename, madness::detail::htons_x(), MADNESS_ASSERT, MADNESS_EXCEPTION, madness::Tensor< T >::max(), madness::Tensor< T >::min(), and madness::World::rank().

Referenced by main().

plotvtk_begin()

template<std::size_t NDIM>

void madness::plotvtk_begin	(	World &	world,
		const char *	filename,
		const Vector< double, NDIM > &	plotlo,
		const Vector< double, NDIM > &	plothi,
		const Vector< long, NDIM > &	npt,
		bool	binary = false
	)

Writes the header information of a VTK file for plotting in an external post-processing package (such as Paraview)

Parameters

world	World communicator
filename	String containing the filename to export to
plotlo	Vector of double values indicating the minimum coordinate to plot to in each dimension
plothi	Vector of double values indicating the maximum coordinate to plot to in each dimension
npt	Vector of long integers indicating the number of points to plot in each dimension
binary	(optional) Boolean indicating whether to print in binary The VTK routines are also designed for SERIAL data, parallel coming...

This header is templated by the dimension of the data.

To plot with the plotvtk_* routines: plotvtk_begin(...) plotvtk_data(...) plotvtk_data(...) ... plotvtk_end(...)

NOTE: Paraview expects the structured mesh points in a particular order, which is why the LowDimIndexIterator is used...

References f, madness::WorldGopInterface::fence(), filename, madness::World::gop, MADNESS_ASSERT, MADNESS_EXCEPTION, NDIM, PROFILE_FUNC, and madness::World::rank().

Referenced by Plotter::dovolumeplot(), and testNavierStokes().

plotvtk_data() [1/3]

template<typename T , std::size_t NDIM>

void madness::plotvtk_data	(	const Function< std::complex< T >, NDIM > &	function,
		const char *	fieldname,
		World &	world,
		const char *	filename,
		const Vector< double, NDIM > &	plotlo,
		const Vector< double, NDIM > &	plothi,
		const Vector< long, NDIM > &	npt,
		bool	binary = false,
		bool	plot_refine = false
	)

VTK data writer for complex-valued madness::functions.

The complex-value is written as two reals (a vector from VTK's perspective. The first (X) component is the real part and the second (Y) component is the imaginary part. Set plot_refine=true to get a plot of the refinement levels of the given function.

References madness::WorldGopInterface::barrier(), f, madness::WorldGopInterface::fence(), filename, madness::World::gop, imag(), MADNESS_ASSERT, MADNESS_EXCEPTION, NDIM, PROFILE_FUNC, madness::World::rank(), and real().

plotvtk_data() [2/3]

template<typename T , std::size_t NDIM>

void madness::plotvtk_data	(	const Function< T, NDIM > &	function,
		const char *	fieldname,
		World &	world,
		const char *	filename,
		const Vector< double, NDIM > &	plotlo,
		const Vector< double, NDIM > &	plothi,
		const Vector< long, NDIM > &	npt,
		bool	binary = false,
		bool	plot_refine = false
	)

VTK data writer for real-valued (not complex) madness::functions.

Set plot_refine=true to get a plot of the refinement levels of the given function.

References madness::WorldGopInterface::barrier(), f, madness::WorldGopInterface::fence(), filename, madness::World::gop, MADNESS_ASSERT, MADNESS_EXCEPTION, NDIM, PROFILE_FUNC, and madness::World::rank().

plotvtk_data() [3/3]

template<typename T , std::size_t NDIM>

void madness::plotvtk_data	(	const T &	function,
		const char *	fieldname,
		World &	world,
		const char *	filename,
		const Vector< double, NDIM > &	plotlo,
		const Vector< double, NDIM > &	plothi,
		const Vector< long, NDIM > &	npt,
		bool	binary = false
	)

Generic VTK data writer. Specific type instances of this function are defined for both real and complex valued functions.

Parameters

function	Function (real or complex) that we wish to export the data of
fieldname	A string containing the name we wish to refer to this field as in the exported data
world	World communicator
filename	String containing the filename to export to
plotlo	Vector of double values indicating the minimum coordinate to plot to in each dimension
plothi	Vector of double values indicating the maximum coordinate to plot to in each dimension
npt	Vector of long integers indicating the number of points to plot in each dimension
binary	(optional) Boolean indicating whether to print in binary This templated function won't do anything except print a warning message. Specialized versions of this function should be used.

References MADNESS_EXCEPTION.

Referenced by Plotter::dovolumeplot(), and testNavierStokes().

plotvtk_end()

template<std::size_t NDIM>

void madness::plotvtk_end	(	World &	world,
		const char *	filename,
		bool	binary = false
	)

Writes the footer information of a VTK file for plotting in an external post-processing package (such as Paraview)

Parameters

world	World communicator
filename	Name of VTK file
binary	(Optional) Boolean indicating whether to print in binary

References f, madness::WorldGopInterface::fence(), filename, madness::World::gop, MADNESS_ASSERT, MADNESS_EXCEPTION, NDIM, PROFILE_FUNC, and madness::World::rank().

PM_q()

static double madness::PM_q ( const tensorT &  S, const double *MADNESS_RESTRICT  Ci, const double *MADNESS_RESTRICT  Cj, int  lo, int  nbf  )

inlinestatic

References lo, and mu.

Referenced by madness::SystolicPMOrbitalLocalize::localize_PM_ij().

pop()

static double madness::pop ( std::vector< double > &  v )

static

References MADNESS_ASSERT, and v.

Referenced by madness::Displacements< NDIM >::Displacements(), madness::Vector< T, N >::Vector(), madness::Tensor< T >::allocate(), madness::FunctionImpl< T, NDIM >::apply_1d_realspace_push_op(), madness::Key< NDIM >::break_apart(), DF::end_timer(), END_TIMER(), madness::FunctionCommonData< T, NDIM >::get(), madness::GaussianConvolution1DCache< Q >::get(), madness::WorldObject< Derived >::handler(), madness::WorldObject< Derived >::is_ready(), main(), madness::Displacements< NDIM >::make_disp_periodicsum(), madness::Tensor< T >::operator=(), madness::WorldObject< Derived >::process_pending(), and madness::archive::BufferOutputArchive::store().

position_stream()

std::istream & madness::position_stream	(	std::istream &	f,
		const std::string &	tag,
		bool	rewind = true
	)

References errmsg(), f, and MADNESS_EXCEPTION.

Referenced by main(), madness::DFParameters::read(), madness::Molecule::read(), madness::BasisFunctions::read_basis_from_file(), madness::BasisFunctions::read_contracted_basis_from_file(), madness::ElectronicStructureParams::read_file(), and MolecularEntity::read_file().

position_stream_to_word()

std::istream& madness::position_stream_to_word	(	std::istream &	f,
		const std::string &	tag,
		const char	comment,
		bool	rewind,
		bool	silent
	)

position the input stream to tag, which must be a word (not part of a word)

Parameters

f	input stream
tag	the word to look for
comment	a comment character for (parts of) a line
rewind	rewind to the beginning of the stream
silent	throws if not successful, but doesn't print error message

Returns

a stream

References errmsg(), f, and MADNESS_EXCEPTION.

Referenced by plot_plane(), madness::Molecule::position_stream_in_library(), and madness::QCCalculationParametersBase::read_internal().

power() [1/2]

template<int D>

int madness::power ( int  base = 2 )

inline

References pow().

Referenced by ncf::operator()().

power() [2/2]

template<int N, class T >

T madness::power

(

T const

x

)

References madness::detail::helper< T, N >::pow().

power< 0 >()

template<>

int madness::power< 0 > ( int  base )

inline

power< 1 >()

template<>

int madness::power< 1 > ( int  base )

inline

power< 10 >()

template<>

int madness::power< 10 > ( int  base )

inline

References power< 2 >(), and power< 5 >().

power< 12 >()

template<>

int madness::power< 12 > ( int  base )

inline

References power< 3 >(), and power< 4 >().

power< 2 >()

template<>

int madness::power< 2 > ( int  base )

inline

Referenced by power< 10 >(), power< 4 >(), power< 5 >(), power< 6 >(), power< 8 >(), madness::Polynomial< N >::Spp_div_S(), madness::Polynomial< N >::Srr_div_S(), madness::Polynomial< N >::Srrr_div_S(), and madness::Polynomial< N >::U2X_spherical().

power< 3 >()

template<>

int madness::power< 3 > ( int  base )

inline

Referenced by power< 12 >(), power< 5 >(), power< 6 >(), power< 7 >(), power< 9 >(), madness::GradientalGaussSlater::Srrr_div_S(), madness::Polynomial< N >::Srrr_div_S(), and madness::Polynomial< N >::U2X_spherical().

power< 4 >()

template<>

int madness::power< 4 > ( int  base )

inline

References power< 2 >().

Referenced by power< 12 >(), power< 7 >(), power< 8 >(), madness::GradientalGaussSlater::Srr_div_S(), madness::GradientalGaussSlater::Srrr_div_S(), and madness::Polynomial< N >::U2X_spherical().

power< 5 >()

template<>

int madness::power< 5 > ( int  base )

inline

References power< 2 >(), and power< 3 >().

Referenced by power< 10 >(), and madness::Polynomial< N >::U2X_spherical().

power< 6 >()

template<>

int madness::power< 6 > ( int  base )

inline

References power< 2 >(), and power< 3 >().

Referenced by madness::GradientalGaussSlater::Srrr_div_S().

power< 7 >()

template<>

int madness::power< 7 > ( int  base )

inline

References power< 3 >(), and power< 4 >().

power< 8 >()

template<>

int madness::power< 8 > ( int  base )

inline

References power< 2 >(), and power< 4 >().

power< 9 >()

template<>

int madness::power< 9 > ( int  base )

inline

References power< 3 >().

print()

template<typename T , typename... Ts>

void madness::print	(	const T &	t,
		const Ts &...	ts
	)

Print items to std::cout (items separated by spaces) and terminate with a new line.

The first item is printed here so that it isn't preceded by a space.

Template Parameters

T	Type of the first item to be printed.
Ts	Argument pack type for the items to be printed.

Parameters

[in]	t	The first item to be printed.
[in]	ts	The remaining items to be printed in the argument pack.

References ENDL, print_helper(), and madness::detail::printmutex.

Referenced by madness::AdhocNuclearCorrelationFactor::AdhocNuclearCorrelationFactor(), Calculation::Calculation(), madness::cartesian_grid< NDIM >::cartesian_grid(), madness::DependencyInterface::DependencyInterface(), madness::dftgrid< NDIM >::dftgrid(), EwaldNuclearPotentialFunctor::EwaldNuclearPotentialFunctor(), madness::GaussSlater::GaussSlater(), madness::GFit< T, NDIM >::GFit(), madness::GradientalGaussSlater::GradientalGaussSlater(), GridBuilder::GridBuilder(), madness::LinearSlater::LinearSlater(), MolecularNuclearChargeDensityFunctor::MolecularNuclearChargeDensityFunctor(), MolecularNuclearPotentialFunctor2::MolecularNuclearPotentialFunctor2(), madness::MP2::MP2(), madness::poly4erfc::poly4erfc(), madness::Polynomial< N >::Polynomial(), madness::PseudoNuclearCorrelationFactor::PseudoNuclearCorrelationFactor(), madness::Slater::Slater(), TestBarrier::TestBarrier(), TestSystolicMatrixAlgorithm< T >::TestSystolicMatrixAlgorithm(), TimeBarrier::TimeBarrier(), madness::Zcis::Zcis(), B::~B(), madness::DependencyInterface::~DependencyInterface(), madness::FutureImpl< T >::~FutureImpl(), madness::BSHApply< T, NDIM >::add_coupling_and_levelshift(), madness::detail::RemoteCounterBase::add_ref(), madness::Znemo::analyze(), LProjector::analyze(), madness::TDHF::analyze(), apply(), apply_bsh(), madness::projector_irrep::apply_symmetry_operators(), apply_U_mix(), apply_U_ncf(), madness::MP2::asymmetry(), madness::GFit< T, NDIM >::bsh_fit(), madness::GFit< T, NDIM >::bsh_fit_ndim(), madness::GFit< T, NDIM >::BSHFit(), BSHOperator(), BSHOperatorPtr(), madness::Solver< T, NDIM >::build_fock_matrix(), Calculation::calc_optimal_coeffs(), check(), madness::TDHF::check_consistency(), madness::NemoBase::check_convergence(), madness::MP2::check_core_valence_separation(), madness::Localizer::check_core_valence_separation(), check_err(), check_linear_dependence(), check_multiplication_table_c2v(), check_operator_multiplications_2d(), check_operator_multiplications_3d(), madness::LowRankFunction< T, NDIM, LDIM >::check_orthonormality(), madness::PNO::check_orthonormality(), check_small(), madness::Function< T, NDIM >::check_symmetry(), madness::QCCalculationParametersBase::check_type(), check_vector(), madness::test_output::checkpoint(), compare_calc_and_mos(), madness::Zcis::compare_to_file(), madness::FunctionImpl< T, NDIM >::compress_spawn(), madness::Nemo::compute_all_cphf(), madness::OEP::compute_and_print_final_energies(), madness::Localizer::compute_core_valence_separation_transformation_matrix(), madness::Znemo::compute_current_density(), madness::Znemo::compute_energy(), compute_energy(), compute_energy_simple(), compute_energy_with_U(), compute_frequencies(), madness::MP2::compute_gQf(), madness::Localizer::compute_localization_matrix(), madness::MP3::compute_mp3_cd(), madness::MP3::compute_mp3_ef(), madness::MP3::compute_mp3_ghij(), madness::MP3::compute_mp3_ghij_fast(), madness::MP3::compute_mp3_klmn(), compute_R2f2_psi(), madness::SVDTensor< T >::compute_randomized_svd(), madness::SCF::compute_residual(), madness::Znemo::compute_residuals(), madness::Zcis::compute_residuals(), Calculation::compute_residuals(), converge(), converge2s(), TestSystolicMatrixAlgorithm< T >::converged(), madness::GenTensor< T >::convert_inplace(), madness::PotentialManager::core_projection(), create_nuclear_correlation_factor(), madness::Solver< T, NDIM >::csqrt(), madness::Znemo::custom_guess(), madness::DependencyInterface::dec_debug(), madness::TensorTrain< T >::decompose(), madness::QCPropertyInterface::density(), madness::SCF::derivatives(), madness::detail::RemoteCounter::destroy(), madness::Localizer::determine_frozen_orbitals(), madness::SCF::dipole(), dnuclear_anchor_test(), madness::Cloud::do_load(), madness::Solver< T, NDIM >::do_rhs(), madness::Solver< T, NDIM >::do_rhs_simple(), madness::SCF::do_step_restriction(), MiniDFT::doit(), doit(), doplot(), eigenvector_test(), energy(), madness::MP2::enforce_core_valence_separation(), madness::CC2::enforce_core_valence_separation(), madness::TDHF::enforce_core_valence_separation(), GygiPot::ESP(), madness::XCfunctional::exc(), exchange_anchor_test(), exchange_anchor_test(), madness::GFit< T, NDIM >::F12Fit(), madness::GFit< T, NDIM >::F12sqFit(), madness::GFit< T, NDIM >::F2GFit(), madness::WorldGopInterface::fence_impl(), madness::GFit< T, NDIM >::FGFit(), fixphases(), TTT::fred(), Mary::galahad(), gauss_legendre_test(), madness::GFit< T, NDIM >::GaussFit(), gen_ce(), generate_G_vectors(), generate_R_vectors(), madness::MP2::get_fock_matrix(), madness::randomgrid< NDIM >::get_grid(), madness::molecular_grid< NDIM >::get_grid(), madness::Znemo::get_initial_orbitals(), madness::QCCalculationParametersBase::get_parameter(), madness::MP2::get_residue(), madness::Nemo::gradient(), madness::Znemo::gradient(), CoreFittingTarget::gradient(), madness::SCF::group_orbital_sets(), madness::BasisFunctions::guess_contracted_virtuals_from_file(), madness::BasisFunctions::guess_virtuals_from_file(), madness::BasisFunctions::guess_virtuals_internal(), hartree_product(), madness::Znemo::hcore_guess(), DF::help(), madness::CC2::help(), madness::MP2::help(), madness::Nemo::help(), madness::OEP::help(), madness::PNO::help(), madness::SCF::help(), madness::TDHF::help(), madness::Zcis::help(), madness::Znemo::help(), madness::Nemo::hessian(), madness::DependencyInterface::inc_debug(), madness::MP2::increment(), madness::CCConvolutionOperator< T, NDIM >::init_op(), madness::Solver< T, NDIM >::initial_guess(), madness::SCF::initial_guess(), initial_guess(), initial_loadbal(), madness::SCFProtocol::initialize(), data< T, NDIM >::initialize(), madness::CC2::initialize_pairs(), madness::CC2::initialize_singles(), inner(), madness::Znemo::iterate(), madness::OEP::iterate(), madness::Zcis::iterate(), iterate(), iterate_excite(), iterate_ground(), madness::CC2::iterate_lrcc2_pairs(), madness::PNO::iterate_pairs_internal(), madness::CC2::iterate_singles(), iterate_xy(), KAIN(), madness::Nemo::kinetic_energy_potential(), madness::LowRankFunction< T, NDIM, LDIM >::l2error(), QuasiNewton::line_search(), madness::QuasiNewton::line_search(), madness::detail::RemoteCounter::load_(), madness::LoadBalanceDeux< NDIM >::load_balance(), load_balance(), madness::Cloud::load_from_cache(), madness::MP2::load_function(), madness::Nemo::load_function(), load_function(), load_function(), madness::SCF::load_mos(), Calculation::load_mos(), madness::CCPair::load_pair(), madness::ElectronPair::load_pair(), madness::OEP::load_restartdata(), loadbal(), madness::Localizer::localize_boys(), madness::Localizer::localize_new(), main(), main(), madness::ThreadBase::main(), TestCalculationParameters::make_all_parameter_doubles(), TestCalculationParameters::make_all_parameter_singles(), madness::SCF::make_bsh_operators(), make_dimensions(), DF::make_fermi_potential(), GridBuilder::make_grid(), madness::Zcis::make_guess(), madness::TDHF::make_guess_from_initial_diagonalization(), madness::Solver< T, NDIM >::make_nuclear_charge_density_impl(), madness::Solver< T, NDIM >::make_nuclear_potential(), Calculation::make_reference(), madness::SeparatedConvolution< Q, NDIM >::make_tt_representation(), madness::MP2::make_Uphi0(), makeao(), moments(), madness::MP3::mp3_energy_contribution(), madness::MP3::mp3_energy_contribution_macrotask_driver(), madness::MP3::mp3_test(), madness::QCPropertyInterface::multipole_moment(), madness::QCPropertyInterface::no_cusp_density(), madness::QCPropertyInterface::no_cusp_spindensity(), madness::CCPairFunction< T, NDIM >::norm2(), nuclear_anchor_test(), madness::QCPropertyInterface::nuclear_derivative(), madness::CCPairFunction< T, NDIM >::op_dec_to_dec(), LProjector::operator()(), madness::CompositeFunctorInterface< T, NDIM, MDIM >::operator()(), MicroTask::operator()(), madness::BSHApply< T, NDIM >::operator()(), madness::ParametrizedExchange::operator()(), madness::TwoElectronInterface< T, NDIM >::operator()(), madness::FunctionImpl< T, NDIM >::do_inner_local< R >::operator()(), madness::FunctionImpl< T, NDIM >::do_inner_local_on_demand< R >::operator()(), BoysLocalization::operator()(), madness::SliceLowRankTensor< T >::operator=(), operator>>(), MySteepestDescent::optimize(), SteepestDescent::optimize(), QuasiNewton::optimize(), madness::SteepestDescent::optimize(), madness::QuasiNewton::optimize(), madness::MolecularOptimizer::optimize_quasi_newton(), madness::Molecule::orient(), orth(), madness::LowRankFunction< T, NDIM, LDIM >::orthonormalize(), madness::Solver< T, NDIM >::orthonormalize(), madness::SCF::orthonormalize(), madness::LBDeuxPmap< NDIM >::owner(), SurfaceMoleculeInteraction::perturbed_molecular_pot(), Foo::ping(), Foo::ping_am(), madness::BandlimitedPropagator::plot(), plot_plane(), plot_symmetry_operators(), madness::PNO::pno_compress(), Foo::pong(), Foo::pong_am(), pounder(), preloadbal(), madness::MolecularOrbitals< T, NDIM >::pretty_print(), Metric::print(), ExactSpinor::print(), madness::LBDeuxPmap< NDIM >::print(), madness::MyPmap< D >::print(), madness::QCCalculationParametersBase::print(), madness::PairVectorMap::print(), madness::Timer::print(), MatrixOperator::print(), madness::projector_irrep::print_character_table(), madness::scf_data::print_data(), madness::WorldDCPmapInterface< keyT >::print_data_sizes(), madness::Solver< T, NDIM >::print_fock_matrix_eigs(), madness::MolecularOrbitals< T, NDIM >::print_frozen_orbitals(), print_header1(), print_header2(), print_header3(), Calculation::print_info(), madness::Diamagnetic_potential_factor::print_info(), madness::Localizer::print_info(), madness::projector_irrep::print_info(), madness::MacroTask< taskT >::MacroTaskInternal::print_me(), madness::MacroTaskBase::print_me_as_table(), madness::MacroTask< taskT >::MacroTaskInternal::print_me_as_table(), Spinor::print_norms(), madness::F12Potentials::print_pair_energies(), DF::print_parameters(), madness::CC2::print_parameters(), madness::Molecule::print_parameters(), madness::MP2::print_parameters(), madness::Nemo::print_parameters(), madness::OEP::print_parameters(), madness::PNO::print_parameters(), madness::SCF::print_parameters(), madness::TDHF::print_parameters(), madness::Zcis::print_parameters(), madness::Znemo::print_parameters(), madness::DFParameters::print_params(), madness::InitParameters::print_params(), GroundStateCalculation::print_params(), madness::Solver< T, NDIM >::print_potential_matrix_eigs(), print_seq(), madness::FunctionImpl< T, NDIM >::print_size(), madness::Function< T, NDIM >::print_size(), madness::CCPairFunction< T, NDIM >::print_size(), madness::Cloud::print_size(), madness::FunctionImpl< T, NDIM >::print_stats(), madness::MacroTaskQ::print_taskq(), madness::Cloud::print_timings(), madness::LoadBalanceDeux< NDIM >::print_tree(), madness::TDHF::print_xfunctions(), madness::LowRankFunctionFactory< T, NDIM, LDIM >::project(), Calculation::project_potential_basis(), madness::MolecularOptimizer::projector_external_dof(), propagate(), madness::Nemo::purify_hessian(), madness::TensorTrain< T >::ranks(), Plotter::read(), GroundStateCalculation::read(), madness::InitParameters::read(), madness::Znemo::read_complex_guess(), madness::Molecule::read_core_file(), madness::Znemo::read_explicit_guess_functions(), madness::CorePotentialManager::read_file(), madness::FunctionImpl< T, NDIM >::read_grid(), madness::FunctionImpl< T, NDIM >::read_grid2(), madness::Zcis::read_guess(), madness::QCCalculationParametersBase::read_input_and_commandline_options(), madness::QCCalculationParametersBase::read_internal(), madness::Znemo::read_real_guess(), madness::Znemo::read_reference(), madness::Znemo::read_restartaodata(), madness::MolecularOrbitals< T, NDIM >::read_restartaodata(), read_test_data(), madness::InitParameters::readnw(), madness::Znemo::recompute_factors_and_potentials(), madness::MolecularOrbitals< T, NDIM >::recompute_irreps(), reconstruct_psi(), madness::FunctionImpl< T, NDIM >::recursive_apply(), madness::projector_irrep::reduce(), madness::DependencyInterface::register_callback(), madness::DependencyInterface::register_final_callback(), madness::detail::RemoteCounter::register_ptr_(), madness::detail::RemoteCounterBase::release(), madness::SCF::restart_aos(), madness::MacroTask< taskT >::MacroTaskInternal::run(), TestTask::run(), run(), TestBarrier::run(), madness::MacroTaskQ::run_all(), run_all_calculations(), madness::MP2::save_function(), save_function(), madness::Nemo::save_function(), save_function(), madness::Zcis::save_guess(), madness::Znemo::save_orbitals(), madness::OEP::save_restartdata(), madness::OEP::selftest(), madness::FunctionNode< T, NDIM >::set_coeff(), madness::Molecule::GeometryParameters::set_derived_values(), madness::XCOperator< T, NDIM >::set_extra_truncation(), madness::Function< T, NDIM >::set_functor(), madness::projector_irrep::set_irrep(), madness::projector_irrep::set_ordering(), Calculation::set_protocol(), madness::SCF::set_protocol(), show_norms(), simple_example(), madness::GFit< T, NDIM >::SlaterFit(), madness::Solver< T, NDIM >::solve(), SVPESolver::solve(), madness::Nemo::solve(), madness::OEP::solve(), madness::SpectralPropagator::solve(), madness::PNO::solve(), madness::SCF::solve(), solve(), madness::CC2::solve_cc2(), madness::TDHF::solve_cis(), madness::Nemo::solve_cphf(), madness::CC2::solve_mp2_coupled(), madness::MP2::solve_residual_equations(), madness::QCPropertyInterface::spindensity(), squareit(), startup(), madness::SpectralPropagatorGaussLobatto::step(), madness::SpectralPropagator::step(), madness::Solver< T, NDIM >::step_restriction(), madness::archive::BufferOutputArchive::store(), madness::Cloud::store(), madness::detail::RemoteCounter::store_(), su_complex(), symmetrize(), madness::Molecule::symmetrize_and_identify_point_group(), madness::PNO::t_solve(), madness::IndexIterator::test(), madness::Znemo::test(), madness::TDHF::test(), test(), test0(), test0GaussLobatto(), test1(), test10(), test11(), test12(), test13(), test14(), test15(), test2(), test5(), test6(), test6a(), Test7(), test7(), test8(), test9(), test_2d_partitioning(), test_adaptive_tree(), test_add(), test_addition(), test_apply(), test_apply_push_1d(), test_arithmetic(), test_asymmetric(), test_basic(), test_batch(), test_batch_1D(), test_bsh(), test_capitalization(), TEST_CASE(), test_chin_chen(), test_combined_operators(), test_comment_lines(), test_compress(), madness::Znemo::test_compute_current_density(), test_consolidate(), test_construction_optimization(), test_constructor(), test_conv(), test_converged_function(), test_conversion(), test_convert(), test_convolution(), test_coulomb(), test_cross(), test_custom_worldobject(), test_deferred(), test_derived(), test_diff(), test_dnuclear(), test_empty_lines(), test_emul(), test_ethylene(), test_exchange(), test_exchange(), test_florian(), test_fock(), test_full_rank_functor(), test_G_R_vectors(), test_gaussian_num_coeffs(), test_gconv(), test_general_transform(), test_hartree_product(), test_hermiticity(), test_hf_be(), test_hydro(), test_immediate(), test_inner(), test_integration(), test_io(), test_Kcommutator(), test_kinetic(), madness::Znemo::test_landau_wave_function(), test_lda(), test_local(), test_lowrank_function(), test_math(), test_matrix_mul_sparse(), madness::Diamagnetic_potential_factor::test_me(), test_modified(), test_molecular_grid(), test_multi(), test_multi_to_multi_op(), test_multiply(), test_ne_boys(), test_nemo(), test_norm(), test_not_allowed(), test_nuclear(), test_nuclear_energy(), test_nuclear_potential(), test_nuclear_potential2(), test_nuclear_potential3(), test_nuclear_potential_big_unit_cell(), test_op(), test_opdir(), test_operator_apply(), test_orthogonalization(), test_partial_inner(), test_partial_inner_3d(), test_partial_inner_6d(), test_partitioner(), test_per(), test_periodic(), test_periodic1(), test_periodic2(), test_periodic_bsh(), test_plot(), test_proj(), test_projector(), test_projector_outer(), test_Q12_projector(), test_qm(), test_reconstruct(), test_recursive_application(), test_reduce_rank(), test_rot(), test_same(), test_scalar_multiplication(), test_scalar_task(), test_slater_exchange(), test_sliced_addition(), test_sliced_assignment(), test_smooth_maxout(), test_spherical_box(), test_stuff(), test_swap_particles(), test_task1(), test_tight_diffuse(), test_trailing_characters(), test_transform(), test_trotter(), test_truncation(), test_twice(), test_type_conversion1(), test_type_conversion2(), test_type_conversion3(), test_type_conversion4(), test_type_conversion5(), test_type_conversion6(), test_type_conversion7(), test_type_conversion8(), test_U_el(), test_unaryop(), test_vector_composite(), test_vector_of_scalar_task(), test_xcfunctional(), test_XCOperator(), testbsh(), testgradG(), testNavierStokes(), madness::scf_data::to_json(), trotter(), madness::NuclearCorrelationFactor::U2X_spherical(), madness::NonlinearSolverND< NDIM >::update(), madness::XNonlinearSolver< T, C, Alloc >::update(), update(), MiniDFT::update(), madness::PNO::update_pno(), madness::SubspaceK< T, NDIM >::update_subspace(), madness::Subspace< T, NDIM >::update_subspace(), madness::SCF::update_subspace(), madness::MP2::value(), madness::Nemo::value(), CoreFittingTarget::value(), madness::gridbase::visualize(), madness::XCfunctional::vxc(), and walker2().

print_centered()

void madness::print_centered	(	const char *	s,
		int	column,
		bool	underline
	)

Print a string centered at the given column with optional underlining.

References print_justified().

Referenced by main().

print_error()

template<typename T , typename... Ts>

void madness::print_error	(	const T &	t,
		const Ts &...	ts
	)

Print items to std::cerr (items separated by spaces) and terminate with a new line.

The first item is printed here so that it isn't preceded by a space.

Template Parameters

T	Type of the first item to be printed.
Ts	Argument pack type for the items to be printed.

Parameters

[in]	t	The first item to be printed.
[in]	ts	The remaining items to be printed in the argument pack.

References ENDL, print_helper(), and madness::detail::printmutex.

Referenced by madness::RMI::RmiTask::RmiTask(), madness::RMI::RmiTask::exit(), madness::RMI::isend(), and madness::RMI::RmiTask::process_some().

print_header1()

void madness::print_header1

(

const std::string &

s

)

big section heading

References print().

Referenced by main(), madness::TDHF::make_guess_from_initial_diagonalization(), and madness::CC2::solve().

print_header2()

void madness::print_header2

(

const std::string &

s

)

medium section heading

References print().

Referenced by DF::help(), madness::CC2::help(), madness::MP2::help(), madness::Nemo::help(), madness::OEP::help(), madness::PNO::help(), madness::SCF::help(), madness::TDHF::help(), madness::Zcis::help(), madness::Znemo::help(), iterate(), main(), madness::MP3::mp3_energy_contribution(), madness::MP3::mp3_energy_contribution_macrotask_driver(), madness::MP3::mp3_test(), run(), madness::TDHF::solve_cis(), madness::CC2::solve_lrcc2(), madness::CC2::solve_mp2_coupled(), test_conversion(), test_full_rank_functor(), and madness::Nemo::value().

print_header3()

void madness::print_header3

(

const std::string &

s

)

small section heading

References print().

Referenced by madness::MP3::compute_mp3_cd(), madness::MP3::compute_mp3_ef(), madness::MP3::compute_mp3_ef_low_scaling(), madness::MP3::compute_mp3_ef_with_permutational_symmetry(), madness::MP3::compute_mp3_ghij(), madness::MP3::compute_mp3_ghij_fast(), madness::MP3::compute_mp3_klmn(), iterate(), madness::CC2::iterate_lrcc2_pairs(), madness::CC2::solve(), madness::CC2::solve_ccs(), and madness::CC2::solve_mp2_coupled().

print_helper() [1/2]

std::ostream& madness::print_helper ( std::ostream &  out )

inline

Helper function for print. Base case.

This gets called recursively when there are no items left to print.

Parameters

[in,out]

out

Output stream.

Returns

The output stream (for chaining).

Referenced by print(), print_error(), and print_helper().

print_helper() [2/2]

template<typename T , typename... Ts>

std::ostream& madness::print_helper ( std::ostream &  out, const T &  t, const Ts &...  ts  )

inline

Helper function for print. Prints the first item (t) and recursively passes on the other items.

Template Parameters

T	Type of the item to print in this call.
Ts	Argument pack type for the remaining items.

Parameters

[in,out]	out	Output stream.
[in]	t	The item to print in this call.
[in]	ts	The remaining items in the argument pack (they get recursively passed on).

Returns

The output stream (for chaining).

References print_helper().

print_justified()

void madness::print_justified	(	const char *	s,
		int	column,
		bool	underline
	)

Print a string justified on the left to start at the given column with optional underlining.

References ENDL.

Referenced by print_centered().

print_meminfo()

template<typename String >

void madness::print_meminfo	(	int	rank,
		const String &	tag,
		const std::string	filename_prefix = std::string("MEMORY"),
		bool	verbose = false
	)

print aggregate memory stats to file filename_prefix.<rank> , tagged with tag

Parameters

[in]	rank	process rank
[in]	tag	record tag as any string type, e.g. const char[] , std::string , or std::wstring
[in]	filename_prefix	file name prefix; the default value is "MEMORY"
[in]	verbose	if true, will produce verbose output; is only currently used if TCMalloc is used

Note

To make print_meminfo() usable must set the ENABLE_MEM_PROFILE CMake cache variable to ON; this makes print_meminfo() enabled by default. To disable/enable programmatically use print_meminfo_disable()/print_meminfo_enable() .

must set global locale properly with std::locale::global() if tag has nontrivial encoding

Warning

this does not fence, it is up to the user to ensure proper synchronization

References copy(), filename, print_meminfo_enabled(), print_meminfo_keep_ostream_open(), print_meminfo_ostream(), and madness::detail::Vm_cstr< char >().

Referenced by madness::SCF::apply_potential(), madness::SCF::initial_guess(), main(), MiniDFT::makeao(), and madness::SCF::solve().

print_meminfo_disable()

void madness::print_meminfo_disable

(

)

disables print_meminfo() profiling (i.e. calling it is a no-op)

References madness::detail::print_meminfo_flag_accessor().

print_meminfo_enable()

void madness::print_meminfo_enable

(

)

enables print_meminfo() profiling

Note

print_meminfo() profiling is on by default.

References madness::detail::print_meminfo_flag_accessor().

print_meminfo_enabled()

bool madness::print_meminfo_enabled

(

)

Returns

true if print_meminfo() will generate profiling data.

References madness::detail::print_meminfo_flag_accessor().

Referenced by print_meminfo().

print_meminfo_keep_ostream_open() [1/2]

bool madness::print_meminfo_keep_ostream_open

(

)

Returns

true if the stream used by print_meminfo() is open between calls

References madness::detail::print_meminfo_keepstreamopen_accessor().

print_meminfo_keep_ostream_open() [2/2]

void madness::print_meminfo_keep_ostream_open

(

bool

keep_open

)

Parameters

[in]

keep_open

if true, the stream used by print_meminfo() will be kept open

Note

by default the stream is opened and closed every time

References madness::detail::print_meminfo_keepstreamopen_accessor().

Referenced by print_meminfo(), and print_meminfo_ostream().

print_meminfo_ostream()

std::basic_ofstream<wchar_t>& madness::print_meminfo_ostream	(	int	rank = -1,
		const std::string	filename_prefix = std::string("")
	)

Parameters

[in]	rank	process rank; the default is -1
[in]	filename_prefix	file name prefix; the default is empty string

Returns

open stream used by print_meminfo()

Exceptions

std::runtime_error

if: print_meminfo_keep_ostream_open() returns false, or called for the first time with default values of rank or filename_prefix , or if this was previously called with different values of rank or filename_prefix

References filename, and print_meminfo_keep_ostream_open().

Referenced by print_meminfo().

print_seq() [1/4]

template<typename A >

void madness::print_seq	(	World &	world,
		const A &	a
	)

Sequentially ordered printing of (serializable) data from every process.

Collective, no fence.

Template Parameters

A	Type of data 1.

Parameters

[in]	world	The World object.
[in]	a	Data 1.

References a, aa, p(), print(), madness::World::rank(), and madness::World::size().

print_seq() [2/4]

template<typename A , typename B >

void madness::print_seq	(	World &	world,
		const A &	a,
		const B &	b
	)

Sequentially ordered printing of (serializable) data from every process.

Collective, no fence.

Template Parameters

A	Type of data 1.
B	Type of data 2.

Parameters

[in]	world	The World object.
[in]	a	Data 1.
[in]	b	Data 2.

References a, aa, b, p(), print(), madness::World::rank(), and madness::World::size().

print_seq() [3/4]

template<typename A , typename B , typename C >

void madness::print_seq	(	World &	world,
		const A &	a,
		const B &	b,
		const C &	c
	)

Sequentially ordered printing of (serializable) data from every process.

Collective, no fence.

Template Parameters

A	Type of data 1.
B	Type of data 2.
C	Type of data 3.

Parameters

[in]	world	The World object.
[in]	a	Data 1.
[in]	b	Data 2.
[in]	c	Data 3.

References a, aa, b, c, cc, p(), print(), madness::World::rank(), and madness::World::size().

print_seq() [4/4]

template<typename A , typename B , typename C , typename D >

void madness::print_seq	(	World &	world,
		const A &	a,
		const B &	b,
		const C &	c,
		const D &	d
	)

Sequentially ordered printing of (serializable) data from every process.

Collective, no fence.

Template Parameters

A	Type of data 1.
B	Type of data 2.
C	Type of data 3.
D	Type of data 4.

Parameters

[in]	world	The World object.
[in]	a	Data 1.
[in]	b	Data 2.
[in]	c	Data 3.
[in]	d	Data 4.

References a, aa, b, c, cc, d(), p(), print(), madness::World::rank(), and madness::World::size().

print_size()

template<typename T , std::size_t NDIM>

void madness::print_size	(	World &	world,
		const std::vector< Function< T, NDIM > > &	v,
		const std::string &	msg = "vectorfunction"
	)

References madness::World::rank(), and v.

Referenced by madness::BasisFunctions::guess_contracted_virtuals_from_file(), madness::CCPair::info(), madness::CCIntermediatePotentials::insert(), madness::Zcis::iterate(), madness::CC2::iterate_lrcc2_pairs(), madness::CC2::iterate_singles(), madness::Zcis::make_guess(), madness::CCIntermediatePotentials::operator()(), madness::TwoBodyFunctionSeparatedComponent< T, NDIM >::print_size(), madness::F12Potentials::read_cabs_from_file(), and madness::CC2::solve_mp2_coupled().

print_stats()

void madness::print_stats

(

World &

world

)

Print miscellaneous stats on a World.

This requires collective operations within the World.

Parameters

[in]

world

The World to analyze.

References cpu_time(), end_papi_measurement(), madness::WorldGopInterface::fence(), get_papi_measurement(), madness::ThreadPool::get_stats(), madness::RMI::get_stats(), madness::World::gop, madness::WorldGopInterface::max(), madness::RMIStats::max_serv_send_q, madness::WorldGopInterface::min(), madness::RMIStats::nbyte_recv, madness::RMIStats::nbyte_sent, madness::RMIStats::nmsg_recv, madness::RMIStats::nmsg_sent, NUMEVENTS, madness::WorldMemInfo::print(), madness::WorldProfile::print(), q(), madness::World::rank(), madness::ThreadPool::size(), madness::World::size(), madness::WorldGopInterface::sum(), wall_time(), and world_mem_info().

Referenced by main(), and propagate().

print_tree_jsonfile()

template<size_t NDIM>

std::enable_if<NDIM==3,void>::type madness::print_tree_jsonfile	(	World &	world,
		const Function< double, NDIM > &	f,
		std::string	filename
	)

References copy(), f, filename, and madness::World::size().

printf_msg_energy_time()

void madness::printf_msg_energy_time	(	const std::string	msg,
		const double	energy,
		const double	time
	)

References energy.

Referenced by madness::CC2::solve().

project()

template<typename T , std::size_t NDIM>

Function<T,NDIM> madness::project	(	const Function< T, NDIM > &	other,
		int	k = FunctionDefaults<NDIM>::get_k(),
		double	thresh = FunctionDefaults<NDIM>::get_thresh(),
		bool	fence = true
	)

References madness::FunctionFactory< T, NDIM >::empty(), madness::Function< T, NDIM >::get_impl(), k, madness::FunctionFactory< T, NDIM >::k(), PROFILE_FUNC, madness::Function< T, NDIM >::reconstruct(), thresh, madness::FunctionFactory< T, NDIM >::thresh(), and madness::Function< T, NDIM >::world().

Referenced by DF::DF(), madness::smooth< T, NDIM >::cut_oscillations(), MiniDFT::doit(), doit(), madness::smooth< T, NDIM >::linearize(), madness::SCF::load_mos(), Calculation::load_mos(), madness::Solver< T, NDIM >::load_orbitals(), main(), madness::smooth< T, NDIM >::make_inv_mask(), madness::smooth< T, NDIM >::make_mask(), madness::MolecularOrbitals< T, NDIM >::post_process_mos(), madness::SCF::project(), madness::FunctionImpl< T, NDIM >::project_refine_op(), madness::Solver< T, NDIM >::reproject(), madness::GTHPseudopotential< Q >::reproject(), madness::Nemo::smoothen(), and madness::FunctionImpl< T, NDIM >::sock_it_to_me_too().

Q2()

tensorT madness::Q2

(

const tensorT &

s

)

Given overlap matrix, return rotation with 2nd order error to orthonormalize the vectors.

References Q().

Referenced by madness::CCPairFunction< T, NDIM >::apply(), orthonormalize(), madness::SCF::orthonormalize(), and test_projector_outer().

Q3()

tensorT madness::Q3

(

const tensorT &

s

)

Given overlap matrix, return rotation with 3rd order error to orthonormalize the vectors.

References inner(), and Q().

Referenced by Calculation::load_mos().

qm_1d_free_particle_propagator()

Convolution1D< double_complex > * madness::qm_1d_free_particle_propagator	(	int	k,
		double	bandlimit,
		double	timestep,
		double	width
	)

References k.

Referenced by MAKE_PROPAGATOR(), propagate(), qm_free_particle_propagator(), qm_free_particle_propagatorPtr(), test_chin_chen(), test_qm(), and test_trotter().

qm_free_particle_propagator()

template<std::size_t NDIM>

SeparatedConvolution< double_complex, NDIM > madness::qm_free_particle_propagator	(	World &	world,
		int	k,
		double	bandlimit,
		double	timestep
	)

References BC_FREE, madness::FunctionDefaults< NDIM >::get_cell_min_width(), k, q(), and qm_1d_free_particle_propagator().

qm_free_particle_propagatorPtr()

template<std::size_t NDIM>

SeparatedConvolution< double_complex, NDIM > * madness::qm_free_particle_propagatorPtr	(	World &	world,
		int	k,
		double	bandlimit,
		double	timestep
	)

References BC_FREE, madness::FunctionDefaults< NDIM >::get_cell_min_width(), k, q(), and qm_1d_free_particle_propagator().

qr() [1/5]

template void madness::qr	(	Tensor< double > &	A,
		Tensor< double > &	R
	)

qr() [2/5]

template void madness::qr	(	Tensor< double_complex > &	A,
		Tensor< double_complex > &	R
	)

qr() [3/5]

template void madness::qr	(	Tensor< float > &	A,
		Tensor< float > &	R
	)

qr() [4/5]

template void madness::qr	(	Tensor< float_complex > &	A,
		Tensor< float_complex > &	R
	)

qr() [5/5]

template<typename T >

void madness::qr	(	Tensor< T > &	A,
		Tensor< T > &	R
	)

compute the QR decomposition of the matrix A

QR decomposition.

Parameters

[in,out]	A	on entry the (n,m) matrix to be decomposed on exit the Q matrix
[out]	R	the (n,n) matrix R (square form)

References lq_result(), m, R, TENSOR_ASSERT, and transpose().

Referenced by madness::RandomizedMatrixDecomposition< T >::do_compute_range(), and test_qr().

quiet()

bool madness::quiet

(

)

Check if the MADNESS runtime was initialized for quiet operation.

Returns

true if madness::initialize was called with quiet=true .

Referenced by madness::ThreadPool::begin(), madness::WorldGopInterface::initial_max_reducebcast_msg_size(), and initialize().

r2()

static double madness::r2 ( const coord_3d &  x )

static

Referenced by apply(), apply_U_ncf(), apply_V(), area_two_spheres(), coul(), d_smoothed_potential(), distances(), dsmoothed_potential(), dsmoothed_potential(), madness::NuclearCorrelationFactor::dsmoothed_unitvec(), exact_dipoleX(), exact_quadrupoleX(), f6d(), gauss_3d(), gauss_6d(), general_transform(), he_orbitals(), helium_pot(), hylleraas_3term(), data< T, NDIM >::initialize(), main(), madness::TwoElectronInterface< T, NDIM >::make_coeff(), make_radius(), mask_functor_box(), madness::BasisFunctions::SolidHarmonicGaussian::operator()(), gaussian::operator()(), slater_functor(), smoothed_potential(), smoothed_potential(), madness::TensorTrain< T >::splitdim(), test_add(), test_apply(), test_consolidate(), test_hartree_product(), test_integration(), test_multiply_with_f12(), test_partial_inner_6d(), madness::Solver< T, NDIM >::test_periodicity(), test_vector_composite(), tightgauss_3d(), transform(), u(), madness::GaussSlater::U2X_spherical(), madness::GradientalGaussSlater::U2X_spherical(), madness::Slater::U2X_spherical(), madness::Polynomial< N >::U2X_spherical(), V(), V_1(), V_times_phi(), and volume_two_spheres().

RandomValue()

template<class T >

T madness::RandomValue

(

)

Random value that wraps the default Fibonacci generator.

RandomValue< double >()

template<>

double madness::RandomValue< double >

(

)

Random double.

References default_random_generator, and madness::Random::get().

Referenced by madness::Localizer::localize_boys(), madness::Localizer::localize_new(), BoysLocalization::operator()(), madness::MyPmap< D >::prepare_not_so_simple_map(), random_gaussian(), RandomGaussian(), RandomValue< double_complex >(), RandomValue< int >(), and RandomValue< long >().

RandomValue< double_complex >()

template<>

double_complex madness::RandomValue< double_complex >

(

)

Random double_complex.

References RandomValue< double >().

RandomValue< float >()

template<>

float madness::RandomValue< float >

(

)

Random float.

References default_random_generator, and madness::Random::get().

Referenced by RandomValue< float_complex >().

RandomValue< float_complex >()

template<>

float_complex madness::RandomValue< float_complex >

(

)

Random float_complex.

References RandomValue< float >().

RandomValue< int >()

template<>

int madness::RandomValue< int >

(

)

Random int.

References RandomValue< double >().

Referenced by test_transform(), unique_fileid(), and madness::FunctionImpl< T, NDIM >::vtransform_doit().

RandomValue< long >()

template<>

long madness::RandomValue< long >

(

)

Random long.

References RandomValue< double >().

Referenced by make_dimensions(), and test_qr().

RandomVector()

template<class T >

void madness::RandomVector	(	int	n,
		T *	t
	)

RandomVector< double >()

template<>

void madness::RandomVector< double >	(	int	n,
		double *	t
	)

References default_random_generator, and madness::Random::getv().

RandomVector< double_complex >()

template<>

void madness::RandomVector< double_complex >	(	int	n,
		double_complex *	t
	)

References default_random_generator, and madness::Random::getv().

RandomVector< float >()

template<>

void madness::RandomVector< float >	(	int	n,
		float *	t
	)

References default_random_generator, and madness::Random::getv().

RandomVector< float_complex >()

template<>

void madness::RandomVector< float_complex >	(	int	n,
		float_complex *	t
	)

References default_random_generator, and madness::Random::getv().

rank_revealing_decompose()

template<typename T >

long madness::rank_revealing_decompose	(	Tensor< T > &	A,
		Tensor< T > &	U,
		const double	thresh,
		Tensor< typename Tensor< T >::scalar_type > &	s,
		Tensor< T > &	scr
	)

decompose the input tensor A into U and V, skipping singular vectors of small singular values. One deep copy/allocation for U is performed

Parameters

[in,out]	A	the input matrix, on exit the matrix VT (right sing. vectors)
[out]	U	contiguous new tensor holding the left sing. vectors
[in]	thresh	threshold for truncation of the singular vectors
[in]	s	scratch tensor for the singular values, dimension min(n,m)
[in]	scr	scratch tensor the dimension of the scratch tensor may be computed as long lwork=std::max(3*std::min(m,n)+std::max(m,n),5*std::min(m,n)) + n*m;

References _(), A(), copy(), madness::Tensor< T >::flat(), m, MADNESS_ASSERT, max, madness::SRConf< T >::max_sigma(), R1, madness::BaseTensor::size(), svd_result(), and thresh.

Referenced by apply().

read_atom()

static AtomCore madness::read_atom ( TiXmlElement *  e, unsigned int  atn, double  eprec  )

static

References madness::AtomCore::atomic_number, e(), eprec, MADNESS_EXCEPTION, read_orbital(), and read_potential().

Referenced by madness::CorePotentialManager::read_file().

read_data() [1/2]

static bool madness::read_data ( )

static

read_data loads the precomputed Gauss-Legendre data

References data_is_read, f, filename, max_npt, points, and weights.

Referenced by gauss_legendre(), load_coeffs(), load_quadrature(), and madness::guessfactory::PolynomialFunctor::read_string().

read_data() [2/2]

static bool madness::read_data ( int  k )

static

References _cread, autocorr_filename, ij(), k, kread, p(), parity(), and test_autoc().

read_orbital()

static bool madness::read_orbital ( TiXmlElement *  e, AtomCore &  ac  )

static

References c, e(), madness::AtomCore::ncore, madness::AtomCore::orbital, p(), and type().

Referenced by read_atom().

read_potential()

static bool madness::read_potential ( TiXmlElement *  elem, AtomCore &  ac, double  eprec  )

static

References madness::CorePotential::A, madness::CorePotential::alpha, madness::AtomCore::atomic_number, c, e(), eprec, madness::CorePotential::eprec, madness::CorePotential::l, madness::CorePotential::n, madness::AtomCore::ncore, p(), madness::AtomCore::potential, madness::CorePotential::rcut, madness::CorePotential::rcut0, and smoothing_parameter().

Referenced by read_atom().

read_twoscale()

static bool madness::read_twoscale ( int  kmax )

static

References cache, checksum_file(), e(), madness::twoscale_cache_class::g0, madness::twoscale_cache_class::g1, madness::twoscale_cache_class::h0, madness::twoscale_cache_class::h1, k, kmax, loaded, MADNESS_CHECK, phase(), readmat(), and twoscale_filename.

Referenced by load_coeffs(), and two_scale_coefficients().

readmat()

static Tensor<double> madness::readmat ( int  k, FILE *  file  )

static

References a, c, and k.

Referenced by read_twoscale().

real() [1/5]

template<std::size_t NDIM>

Function<double,NDIM> madness::real	(	const Function< double, NDIM > &	z,
		bool	fence = true
	)

Returns a new function that is the real part of the input.

References copy().

real() [2/5]

template<std::size_t NDIM>

Function<double,NDIM> madness::real	(	const Function< double_complex, NDIM > &	z,
		bool	fence = true
	)

Returns a new function that is the real part of the input.

References unary_op_coeffs().

real() [3/5]

template<typename Q , int NDIM>

Function<typename TensorTypeData<Q>::scalar_type,NDIM> madness::real

(

const Function< Q, NDIM > &

func

)

References func(), and unary_op_coeffs().

real() [4/5]

template<typename T , std::size_t NDIM>

std::vector<Function<typename Tensor<T>::scalar_type,NDIM> > madness::real	(	const std::vector< Function< T, NDIM > > &	v,
		bool	fence = true
	)

return the real parts of the vector's function (if complex)

References NDIM, real(), and v.

real() [5/5]

static double madness::real ( double  x )

inline

Referenced by madness::Znemo::analyze(), madness::Solver< T, NDIM >::apply_hf_exchange3(), madness::Solver< T, NDIM >::apply_hf_exchange4(), madness::projector_irrep::apply_symmetry_operators(), madness::Solver< T, NDIM >::calculate_kinetic_energy(), madness::Znemo::canonicalize(), madness::MolecularOrbitals< T, NDIM >::compute_center(), madness::guessfactory::compute_centroids(), madness::Znemo::compute_energy(), madness::Znemo::compute_linear_moment(), compute_madelung_energy(), compute_madelung_energy_PWSCF(), madness::Znemo::compute_magnetic_potential_expectation(), madness::Znemo::compute_residuals(), madness::Zcis::compute_residuals(), madness::Localizer::determine_frozen_orbitals(), DF::diagonalize(), madness::Solver< T, NDIM >::do_rhs(), madness::Solver< T, NDIM >::do_rhs_simple(), eigenvector_test(), energy(), madness::BSHApply< T, NDIM >::eps_in_green(), GMRES(), madness::Solver< T, NDIM >::initial_guess(), madness::Znemo::iterate(), iterate(), madness::Zcis::iterate(), DF::iterate(), main(), madness::Zcis::make_guess(), myreal(), madness::VectorSpace< T, NDIM >::norm(), Fcwf::norm2(), madness::CCPairFunction< T, NDIM >::norm2(), AnsatzBase::normalize(), EwaldNuclearPotentialFunctor::operator()(), madness::detail::realop< NDIM >::operator()(), madness::real_op< Q, NDIM >::operator()(), madness::BSHApply< T, NDIM >::operator()(), Spinor::plot(), plot_line_print_value(), plotvtk_data(), Spinor::print_norms(), print_stats(), real(), madness::Znemo::save_orbitals(), madness::Localizer::separate_core_valence(), tensor_xreal(), test_kinetic(), test_XCOperator(), and madness::Localizer::undo_reordering().

reconstruct() [1/3]

template<typename T , std::size_t NDIM>

const std::vector< Function<T,NDIM> >& madness::reconstruct

(

const std::vector< Function< T, NDIM > > &

v

)

reconstruct a vector of functions

implies fence return v for chaining

References change_tree_state(), reconstructed, and v.

Referenced by abssq(), apply(), apply_potential(), WSTFunctional::apply_xc(), madness::FunctionImpl< T, NDIM >::change_tree_state(), madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::compute_K_tile(), madness::Solver< T, NDIM >::compute_rho(), cross(), div(), madness::FunctionImpl< R, NDIM >::do_print_grid(), doit(), madness::Projector< T, NDIM >::get_vectors_for_outer_product(), madness::StrongOrthogonalityProjector< T, NDIM >::get_vectors_for_outer_product(), hamiltonian_matrix(), madness::Solver< T, NDIM >::initial_guess(), madness::SCF::initial_guess(), madness::CC2::iterate_lrcc2_pairs(), kinetic_energy_matrix(), madness::SCF::kinetic_energy_matrix(), madness::Kinetic< T, NDIM >::kinetic_energy_matrix(), MiniDFT::kinetic_energy_matrix(), kinetic_energy_matrix2(), kinetic_energy_matrix_slow(), madness::SCF::load_mos(), Calculation::load_mos(), madness::Solver< T, NDIM >::load_orbitals(), madness::SCF::make_density(), madness::TDHF::make_mo_bra(), madness::TDHF::make_mo_ket(), Calculation::make_reference(), matrix_mul_sparse(), molresponseExchange(), moments(), mul(), mul_sparse(), nonstandard(), madness::Nuclear< T, NDIM >::operator()(), madness::Lz< T, NDIM >::operator()(), madness::DNuclear< T, NDIM >::operator()(), Calculation::plot_p(), madness::MolecularOrbitals< T, NDIM >::post_process_mos(), madness::SCF::project(), refine_to_common_level(), madness::Solver< T, NDIM >::reproject(), rot(), test2(), madness::SCF::twoint(), and vector_to_PQ().

reconstruct() [2/3]

template<typename T , std::size_t NDIM>

void madness::reconstruct	(	World &	world,
		const std::vector< Function< T, NDIM > > &	v,
		bool	fence = true
	)

Reconstruct a vector of functions.

References change_tree_state(), PROFILE_BLOCK, reconstructed, and v.

reconstruct() [3/3]

template<typename T , std::size_t NDIM>

void madness::reconstruct	(	World &	world,
		const std::vector< Function< T, NDIM > > &	v,
		unsigned int	blk = 1,
		bool	fence = true
	)

Reconstruct a vector of functions.

References madness::WorldGopInterface::fence(), madness::World::gop, PROFILE_BLOCK, and v.

redirectio()

void madness::redirectio	(	const World &	world,
		bool	split = false
	)

redirects standard output and error to rank-specific files

Parameters

[in]	world	the World object that determines rank of this process
[in]	split	if true, write standard output to log.<rank> and standard error to err.<rank>, otherwise write both standard output and error to log.<rank>. The default is false.

References bufsize, filename, MADNESS_EXCEPTION, madness::World::mpi, madness::WorldMpiInterface::rank(), and split().

Referenced by main(), and startup().

reduce()

template<class T >

GenTensor<T> madness::reduce	(	std::list< GenTensor< T > > &	addends,
		double	eps,
		bool	are_optimal = false
	)

add all the GenTensors of a given list

If there are many tensors to add it's beneficial to do a sorted addition and start with those tensors with low ranks

Parameters

[in]	addends	a list with gentensors of same dimensions; will be destroyed upon return
[in]	eps	the accuracy threshold
[in]	are_optimal	flag if the GenTensors in the list are already in SVD format (if TT_2D)

Returns

the sum GenTensor of the input GenTensors

References copy().

Referenced by madness::SeparatedConvolution< Q, NDIM >::apply2(), and main().

reduce_rank()

template<typename T , std::size_t NDIM>

std::vector< Function<T,NDIM> > madness::reduce_rank	(	std::vector< Function< T, NDIM > >	v,
		double	thresh = 0.0,
		bool	fence = true
	)

reduces the tensor rank of the coefficient tensor (if applicable)

Returns

the vector for chaining

References thresh, and v.

refine()

template<typename T , std::size_t NDIM>

void madness::refine	(	World &	world,
		const std::vector< Function< T, NDIM > > &	vf,
		bool	fence = true
	)

refine the functions according to the autorefine criteria

References f, madness::WorldGopInterface::fence(), and madness::World::gop.

Referenced by madness::OEP::compute_Pauli_kinetic_density(), madness::OEP::compute_total_kinetic_density(), div(), grad(), grad_ble_one(), grad_ble_two(), grad_bpsline_two(), grad_bspline_one(), grad_bspline_three(), madness::Nemo::make_density(), madness::Nemo::make_incomplete_hessian(), madness::FunctionDefaults< NDIM >::print(), rot(), madness::FunctionDefaults< NDIM >::set_defaults(), madness::Exchange< double, 3 >::set_printlevel(), and test().

refine_to_common_level()

template<typename T , std::size_t NDIM>

void madness::refine_to_common_level	(	World &	world,
		std::vector< Function< T, NDIM > > &	vf,
		bool	fence = true
	)

refine all functions to a common (finest) level

if functions are not initialized (impl==NULL) they are ignored

References c, std::distance(), get_impl(), reconstruct(), verify_tree(), and VERIFY_TREE.

Referenced by WSTFunctional::apply_xc(), madness::XCOperator< T, NDIM >::apply_xc_kernel(), madness::OEP::compute_dcep_correction(), madness::OEP::compute_mrks_correction(), madness::OEP::compute_ocep_correction(), madness::OEP::compute_slater_potential(), madness::XCOperator< T, NDIM >::compute_xc_energy(), madness::smooth< T, NDIM >::merge_functions(), madness::FunctionImpl< T, NDIM >::refine_to_common_level(), test_math(), test_multi_to_multi_op(), and test_XCOperator().

reset_papi_measurement()

void madness::reset_papi_measurement ( )

inline

rot()

template<typename T , std::size_t NDIM>

std::vector<Function<T,NDIM> > madness::rot	(	const std::vector< Function< T, NDIM > > &	v,
		bool	do_refine = false,
		bool	fence = true
	)

shorthand rot operator

returns the cross product of nabla with a vector f

Parameters

[in]	f	the vector of functions on which the rot operator works on
[in]	refine	refinement before diff'ing makes the result more accurate
[in]	fence	fence after completion; currently always fences

Returns

the vector \frac{\partial}{\partial x_i} f TODO: add this to operator fusion

References apply(), d(), madness::WorldGopInterface::fence(), madness::World::gop, grad(), MADNESS_ASSERT, NDIM, reconstruct(), refine(), and v.

Referenced by madness::Znemo::compute_current_density(), madness::Solver< T, NDIM >::do_rhs(), madness::Solver< T, NDIM >::do_rhs_simple(), fixphases(), and test_rot().

row_distributed_matrix()

template<typename T >

DistributedMatrix<T> madness::row_distributed_matrix	(	World &	world,
		int64_t	n,
		int64_t	m,
		int64_t	rowtile = 0
	)

Generates an (n,m) matrix distributed by rows (column dimension is not distributed)

Parameters

[in]	world	The world
[in]	n	The column (first) dimension
[in]	m	The row (second) dimension
[in]	rowtile	Tile size for row (default is to use all processes)

Returns

A new zero matrix with the requested dimensions and distribution

References m, and row_distributed_matrix_distribution().

row_distributed_matrix_distribution()

static DistributedMatrixDistribution madness::row_distributed_matrix_distribution ( World &  world, int64_t  n, int64_t  m, int64_t  rowtile  )

inlinestatic

Generates an (n,m) matrix distribution distributed by rows (column dimension is not distributed)

Parameters

[in]	world	The world
[in]	n	The column (first) dimension
[in]	m	The row (second) dimension
[in]	rowtile	Tile size for row (default is to use all processes)

Returns

An object encoding the dimension and distribution information

Referenced by row_distributed_matrix().

rr_cholesky() [1/3]

template void madness::rr_cholesky	(	Tensor< double > &	A,
		typename Tensor< double >::scalar_type	tol,
		Tensor< integer > &	piv,
		int &	rank
	)

rr_cholesky() [2/3]

template void madness::rr_cholesky	(	Tensor< double_complex > &	A,
		typename Tensor< double_complex >::scalar_type	tol,
		Tensor< integer > &	piv,
		int &	rank
	)

rr_cholesky() [3/3]

template<typename T >

void madness::rr_cholesky	(	Tensor< T > &	A,
		typename Tensor< T >::scalar_type	tol,
		Tensor< integer > &	piv,
		int &	rank
	)

Compute the rank-revealing Cholesky factorization.

rank-revealing Cholesky factorization

Compute the rank-revealing Cholesky factorization of the symmetric positive definite matrix A

For memory efficiency A is modified inplace. Its upper triangle will hold the result and the lower triangle will be zeroed such that input = inner(transpose(output),output).

Parameters

[in]	A	the positive-semidefinite matrix to be decomposed
[in]	tol	linear dependency threshold for discarding columns of A
[in]	piv	pivot vector, its 1-rank entries are the orthogonal vectors
[in]	rank	numerical rank of A (wrt tol)

References A(), mask_info(), pstrf_(), madness::Tensor< T >::ptr(), and TENSOR_ASSERT.

Referenced by madness::projector_irrep::apply_symmetry_operators(), madness::PNO::orthonormalize_cholesky(), orthonormalize_rrcd(), and test_rr_cholesky().

rsquared()

static double madness::rsquared ( const coordT &  r )

static

Referenced by madness::SCF::analyze_vectors(), and smoothed_density().

save()

template<class T , std::size_t NDIM>

void madness::save	(	const Function< T, NDIM > &	f,
		const std::string	name
	)

References f, and name().

Referenced by madness::OEP::analyze(), madness::Znemo::analyze(), madness::TDHF::analyze(), madness::Nemo::compute_all_cphf(), madness::Znemo::compute_current_density(), madness::Zcis::compute_potentials(), madness::OEP::compute_slater_potential(), madness::OEP::iterate(), madness::Zcis::iterate(), madness::CC2::iterate_lrcc2_pairs(), madness::CC2::iterate_pair(), madness::Nemo::kinetic_energy_potential(), main(), madness::Nemo::make_laplacian_density(), madness::Znemo::save_orbitals(), madness::OEP::selftest(), madness::OEP::solve(), madness::CC2::solve_cc2(), madness::CC2::solve_mp2_coupled(), madness::Znemo::test_compute_current_density(), madness::CC2::update_constant_part_adc2(), madness::CC2::update_constant_part_cc2_gs(), madness::CC2::update_constant_part_cispd(), madness::CC2::update_constant_part_lrcc2(), and madness::Nemo::value().

save_function()

template<typename T , size_t NDIM>

void madness::save_function	(	const std::vector< Function< T, NDIM > > &	f,
		const std::string	name
	)

save a vector of functions

References f, name(), print(), and madness::World::rank().

Referenced by madness::Zcis::compare_to_file(), madness::PNO::save_pnos(), solve(), test_adaptive_tree(), and test_multiply().

scalar_result_shared_ptr_vector()

template<typename T >

std::vector<std::shared_ptr<ScalarResult<T> > > madness::scalar_result_shared_ptr_vector	(	World &	world,
		std::size_t	n
	)

helper function to create a vector of ScalarResult, circumventing problems with the constructors

References MADNESS_EXCEPTION, madness::World::ptr_from_id(), and v.

scale() [1/5]

response_space madness::scale	(	response_space	a,
		double	b
	)

Referenced by SVPESolver::SVPESolver(), madness::BSHApply< T, NDIM >::add_coupling_and_levelshift(), madness::Znemo::analyze(), madness::TDHF::apply_G(), madness::FunctionCommonFunctionality< T, NDIM >::coeffs2values(), madness::FunctionImpl< T, NDIM >::coeffs2values(), madness::Diamagnetic_potential_factor::compute_lz_commutator(), madness::Nemo::compute_nemo_potentials(), madness::Zcis::compute_potentials(), madness::SCF::compute_residual(), madness::F12Potentials::convolve_with_fU(), madness::FunctionImpl< T, NDIM >::do_binary_op(), madness::FunctionImpl< T, NDIM >::do_mul(), madness::FunctionImpl< T, NDIM >::err_box(), gauss_legendre_numeric(), madness::TDHF::get_tda_potential(), madness::Znemo::iterate(), madness::CC2::iterate_singles(), madness::Nemo::kinetic_energy_potential(), main(), madness::MP2::make_Uphi0(), madness::Solver< T, NDIM >::matrix_exponential(), madness::Localizer::matrix_exponential(), matrix_exponential(), moments(), madness::FunctionImpl< T, NDIM >::mul(), madness::EigSolver< T, NDIM >::multi_solve(), AnsatzBase::normalize(), madness::NemoBase::normalize(), madness::Zcis::normalize(), normalize(), madness::FunctionImpl< T, NDIM >::NS_fcube_for_mul(), madness::FunctionImpl< T, NDIM >::NScoeffs2values(), madness::FunctionImpl< T, NDIM >::do_unary_op_value_inplace< opT >::operator()(), operator*(), madness::TwoBodyFunctionSeparatedComponent< T, NDIM >::operator*=(), madness::response_space::operator*=(), madness::FunctionImpl< T, NDIM >::phi_for_mul(), plot_plane(), madness::FunctionImpl< T, NDIM >::print_plane_local(), q_c(), madness::Molecule::read(), MolecularEntity::read_file(), madness::Molecule::read_xyz(), madness::response_space::scale(), scale(), madness::Solver< T, NDIM >::solve(), madness::Nemo::solve_cphf(), squaremod_small(), testNavierStokes(), update(), MiniDFT::update(), madness::PNO::update_pno(), madness::FunctionCommonFunctionality< T, NDIM >::values2coeffs(), madness::FunctionImpl< T, NDIM >::values2coeffs(), and madness::FunctionImpl< T, NDIM >::values2NScoeffs().

scale() [2/5]

template<typename T , typename Q , std::size_t NDIM>

void madness::scale	(	World &	world,
		std::vector< Function< T, NDIM > > &	v,
		const Q	factor,
		bool	fence = true
	)

Scales inplace a vector of functions by the same.

References madness::WorldGopInterface::fence(), madness::World::gop, PROFILE_BLOCK, scale(), and v.

scale() [3/5]

template<typename T , typename Q , std::size_t NDIM>

void madness::scale	(	World &	world,
		std::vector< Function< T, NDIM > > &	v,
		const Q	factor,
		const unsigned int	blk = 1,
		const bool	fence = true
	)

Scales inplace a vector of functions by the same.

References madness::WorldGopInterface::fence(), madness::World::gop, PROFILE_BLOCK, and v.

scale() [4/5]

template<typename T , typename Q , std::size_t NDIM>

void madness::scale	(	World &	world,
		std::vector< Function< T, NDIM > > &	v,
		const std::vector< Q > &	factors,
		bool	fence = true
	)

Scales inplace a vector of functions by distinct values.

References madness::WorldGopInterface::fence(), madness::World::gop, PROFILE_BLOCK, scale(), and v.

scale() [5/5]

template<typename T , typename Q , std::size_t NDIM>

void madness::scale	(	World &	world,
		std::vector< Function< T, NDIM > > &	v,
		const std::vector< Q > &	factors,
		const unsigned int	blk = 1,
		const bool	fence = true
	)

Scales inplace a vector of functions by distinct values.

References madness::WorldGopInterface::fence(), madness::World::gop, PROFILE_BLOCK, and v.

scale_2d()

response_space madness::scale_2d	(	World &	world,
		const response_space &	a,
		const Tensor< double > &	b
	)

serialize_am_args() [1/2]

template<typename Archive >

void madness::serialize_am_args ( Archive &&  )

inline

Terminate argument serialization.

Referenced by new_am_arg(), and serialize_am_args().

serialize_am_args() [2/2]

template<typename Archive , typename T , typename... argT>

void madness::serialize_am_args ( Archive &&  archive, T &&  t, argT &&...  args  )

inline

Argument serialization.

References serialize_am_args().

set_impl()

template<typename T , std::size_t NDIM>

void madness::set_impl	(	std::vector< Function< T, NDIM >> &	v,
		const std::vector< std::shared_ptr< FunctionImpl< T, NDIM >>>	vimpl
	)

References MADNESS_CHECK, and v.

Referenced by madness::MacroTask< taskT >::MacroTaskInternal::get_output(), and impl2function().

set_thread_tag() [1/2]

void madness::set_thread_tag ( int  tag )

inline

sets the thread tag for the thread invoking this function

Parameters

tag	thread tag for the calling thread

References madness::detail::thread_tag_accessor().

set_thread_tag() [2/2]

void madness::set_thread_tag ( ThreadTag  tag )

inline

sets the thread tag for the thread invoking this function

Parameters

tag	thread tag for the calling thread

References madness::detail::thread_tag_accessor().

Referenced by madness::ThreadBase::main().

set_thresh()

template<typename T , std::size_t NDIM>

void madness::set_thresh	(	World &	world,
		std::vector< Function< T, NDIM > > &	v,
		double	thresh,
		bool	fence = true
	)

Sets the threshold in a vector of functions.

References madness::WorldGopInterface::fence(), madness::World::gop, thresh, and v.

Referenced by DF::DF(), madness::SCF::compute_residual(), madness::Znemo::get_initial_orbitals(), madness::SCF::load_mos(), main(), madness::TDHF::make_mo_bra(), madness::TDHF::make_mo_ket(), madness::MolecularOrbitals< T, NDIM >::post_process_mos(), madness::Nemo::set_protocol(), and madness::PNO::solve().

sim_to_user()

template<std::size_t NDIM>

static void madness::sim_to_user ( const Vector< double, NDIM > &  xsim, Vector< double, NDIM > &  xuser  )

static

Convert simulation coords ([0,1]^ndim) to user coords (FunctionDefaults<NDIM>::get_cell())

References madness::FunctionDefaults< NDIM >::get_cell(), and NDIM.

simpt2key()

template<typename T , std::size_t NDIM>

static Key<NDIM> madness::simpt2key ( const Vector< T, NDIM > &  pt, Level  n  )

inlinestatic

Returns the box at level n that contains the given point in simulation coordinates

Parameters

[in]	pt	point in simulation coordinates
[in]	n	the level of the box

References NDIM, and pow().

Referenced by madness::Specialbox_op< T, NDIM >::check_special_points(), madness::NuclearCuspyBox_op< T, NDIM >::operator()(), and madness::FunctionImpl< T, NDIM >::project_refine_op().

size_of()

template<typename T , std::size_t NDIM>

double madness::size_of

(

const intermediateT< T, NDIM > &

im

)

Returns the size of an intermediate.

Returns the size of an intermediate

References madness::Pairs< T >::allpairs.

Referenced by madness::CCConvolutionOperator< T, NDIM >::info().

slater_functor()

static double madness::slater_functor ( const coord_3d &  x )

static

References r2().

slater_radius()

double madness::slater_radius

(

int

atomic_number

)

collection of slater radii needed to calculate R1 and R2; The Journal of Chemical Physics 41, 3199 (1964); doi: 10.1063/1.1725697

Parameters

[in]	atomic_number	atomic_number of atom
[out]		slater radius corresponding to atomic_number

References MADNESS_EXCEPTION.

Referenced by main(), and make_atom_vec().

SlaterF12Operator()

static SeparatedConvolution<double,3> madness::SlaterF12Operator ( World &  world, double  mu, double  lo, double  eps, const BoundaryConditions< 3 > &  bc = FunctionDefaults<3>::get_bc(), int  k = FunctionDefaults<3>::get_k()  )

inlinestatic

References k, lo, mu, and OT_F12.

Referenced by madness::MP2::compute_gQf().

SlaterF12OperatorPtr()

static SeparatedConvolution<double,3>* madness::SlaterF12OperatorPtr ( World &  world, double  mu, double  lo, double  eps, const BoundaryConditions< 3 > &  bc = FunctionDefaults<3>::get_bc(), int  k = FunctionDefaults<3>::get_k()  )

inlinestatic

Factory function generating separated kernel for convolution with (1 - exp(-mu*r))/(2 mu) in 3D.

includes the factor 1/(2 mu)

References k, lo, mu, and OT_F12.

Referenced by madness::F12Potentials::F12Potentials(), test_Kcommutator(), and test_lowrank_function().

SlaterF12sqOperator()

static SeparatedConvolution<double,3> madness::SlaterF12sqOperator ( World &  world, double  mu, double  lo, double  eps, const BoundaryConditions< 3 > &  bc = FunctionDefaults<3>::get_bc(), int  k = FunctionDefaults<3>::get_k()  )

inlinestatic

References k, lo, mu, and OT_F212.

SlaterF12sqOperatorPtr()

static SeparatedConvolution<double,3>* madness::SlaterF12sqOperatorPtr ( World &  world, double  mu, double  lo, double  eps, const BoundaryConditions< 3 > &  bc = FunctionDefaults<3>::get_bc(), int  k = FunctionDefaults<3>::get_k()  )

inlinestatic

References k, lo, mu, and OT_F212.

SlaterOperator()

template<std::size_t NDIM = 3>

static SeparatedConvolution<double,NDIM> madness::SlaterOperator ( World &  world, double  mu, double  lo, double  eps, const BoundaryConditions< NDIM > &  bc = FunctionDefaults<NDIM>::get_bc(), int  k = FunctionDefaults<NDIM>::get_k()  )

inlinestatic

Factory function generating separated kernel for convolution with exp(-mu*r) in 3D.

References k, lo, mu, and OT_SLATER.

Referenced by madness::F12Potentials::F12Potentials().

SlaterOperatorPtr()

static SeparatedConvolution<double, 3>* madness::SlaterOperatorPtr ( World &  world, double  mu, double  lo, double  eps, const BoundaryConditions< 3 > &  bc = FunctionDefaults<3>::get_bc(), int  k = FunctionDefaults<3>::get_k()  )

inlinestatic

Factory function generating separated kernel for convolution with exp(-mu*r) in 3D Note that the 1/(2mu) factor of SlaterF12Operator is not included, this is just the exponential function

References k, lo, mu, and OT_SLATER.

Referenced by test_Kcommutator(), and test_lowrank_function().

SlaterOperatorPtr_ND()

template<std::size_t NDIM>

static SeparatedConvolution<double, NDIM>* madness::SlaterOperatorPtr_ND ( World &  world, double  mu, double  lo, double  eps, const BoundaryConditions< NDIM > &  bc = FunctionDefaults<NDIM>::get_bc(), int  k = FunctionDefaults<NDIM>::get_k()  )

inlinestatic

Factory function generating separated kernel for convolution with exp(-mu*r) in 3D Note that the 1/(2mu) factor of SlaterF12Operator is not included, this is just the exponential function

References k, lo, mu, and OT_SLATER.

smoothed_density()

double madness::smoothed_density

(

double

r

)

Charge density corresponding to smoothed 1/r potential.

Invoke as rho(r/c)/c^3 where c is the radius of the smoothed volume.

References madness::constants::pi, and pow().

Referenced by madness::Molecule::mol_nuclear_charge_density(), MolecularEntity::nuclear_charge_density(), and madness::Molecule::nuclear_charge_density().

smoothed_potential()

double madness::smoothed_potential

(

double

r

)

Smoothed 1/r potential.

Invoke as u(r/c)/c where c is the radius of the smoothed volume.

References a, and r2().

Referenced by madness::Molecule::atomic_attraction_potential(), madness::CorePotential::eval(), madness::CorePotential::eval_derivative(), MolecularEntity::nuclear_attraction_potential(), madness::Molecule::nuclear_attraction_potential(), madness::Molecule::nuclear_attraction_potential_second_derivative(), PotentialBasisFunctor::operator()(), NcOverR::operator()(), madchem::AtomicAttractionFunctor::operator()(), madness::PseudoNuclearCorrelationFactor::Spp_div_S(), V(), V_func_be(), V_func_he(), Ve(), and Vn().

smoothing_parameter()

double madness::smoothing_parameter	(	double	Z,
		double	eprec
	)

Returns radius for smoothing nuclear potential with energy precision eprec.

References c, e(), eprec, pow(), and Z.

Referenced by madness::Molecule::add_atom(), MolecularEntity::add_atom(), Calculation::make_reference(), madness::Molecule::read_core_file(), read_potential(), madness::CorePotentialManager::set_eprec(), madness::PseudoNuclearCorrelationFactor::Spp_div_S(), madness::Molecule::update_rcut_with_eprec(), V_func_be(), and V_func_he().

SmoothingOperator()

template<std::size_t NDIM>

static SeparatedConvolution<double,NDIM> madness::SmoothingOperator ( World &  world, double  eps, const BoundaryConditions< NDIM > &  bc = FunctionDefaults<NDIM>::get_bc(), int  k = FunctionDefaults<NDIM>::get_k()  )

inlinestatic

Factory function generating separated kernel for convolution a normalized Gaussian (aka a widened delta function)

References L, NDIM, and pow().

SmoothingOperator3D()

static SeparatedConvolution<double,3> madness::SmoothingOperator3D ( World &  world, double  eps, const BoundaryConditions< 3 > &  bc = FunctionDefaults<3>::get_bc(), int  k = FunctionDefaults<3>::get_k()  )

inlinestatic

Factory function generating separated kernel for convolution a normalized Gaussian (aka a widened delta function)

References L, and pow().

Referenced by dostuff(), and madness::Nemo::kinetic_energy_potential().

SPEC() [1/15]

madness::SPEC	(	double	,
		double_complex	,
		double_complex
	)

SPEC() [2/15]

madness::SPEC	(	double	,
		float_complex	,
		float_complex
	)

SPEC() [3/15]

madness::SPEC	(	float	,
		double	,
		double
	)

SPEC() [4/15]

madness::SPEC	(	float	,
		double_complex	,
		double_complex
	)

SPEC() [5/15]

madness::SPEC	(	float	,
		float_complex	,
		float_complex
	)

SPEC() [6/15]

madness::SPEC	(	float_complex	,
		double_complex	,
		double_complex
	)

SPEC() [7/15]

madness::SPEC	(	int	,
		double	,
		double
	)

SPEC() [8/15]

madness::SPEC	(	int	,
		double_complex	,
		double_complex
	)

SPEC() [9/15]

madness::SPEC	(	int	,
		float	,
		float
	)

SPEC() [10/15]

madness::SPEC	(	int	,
		float_complex	,
		float_complex
	)

SPEC() [11/15]

madness::SPEC	(	int	,
		long	,
		long
	)

SPEC() [12/15]

madness::SPEC	(	long	,
		double	,
		double
	)

SPEC() [13/15]

madness::SPEC	(	long	,
		double_complex	,
		double_complex
	)

SPEC() [14/15]

madness::SPEC	(	long	,
		float	,
		float
	)

SPEC() [15/15]

madness::SPEC	(	long	,
		float_complex	,
		float_complex
	)

square() [1/2]

template<typename T , std::size_t NDIM>

Function<T,NDIM> madness::square	(	const Function< T, NDIM > &	f,
		bool	fence = true
	)

Create a new function that is the square of f - global comm only if not reconstructed.

References copy(), f, PROFILE_FUNC, and madness::Function< T, NDIM >::square().

Referenced by compute_energy(), madness::OEP::compute_mrks_correction(), madness::EigSolver< T, NDIM >::compute_rho(), main(), madness::SCF::make_density(), MiniDFT::make_density(), Calculation::make_reference(), nuclear_anchor_test(), run(), test_he_potential(), and test_math().

square() [2/2]

template<typename T , std::size_t NDIM>

std::vector< Function<T,NDIM> > madness::square	(	World &	world,
		const std::vector< Function< T, NDIM > > &	v,
		bool	fence = true
	)

Computes the square of a vector of functions — q[i] = v[i]**2.

References v.

standard() [1/2]

template<typename T , std::size_t NDIM>

void madness::standard	(	World &	world,
		std::vector< Function< T, NDIM > > &	v,
		bool	fence = true
	)

Generates standard form of a vector of functions.

References change_tree_state(), compressed, PROFILE_BLOCK, and v.

Referenced by apply(), madness::FunctionImpl< T, NDIM >::change_tree_state(), and madness::FunctionImpl< R, NDIM >::do_print_grid().

standard() [2/2]

template<typename T , std::size_t NDIM>

void madness::standard	(	World &	world,
		std::vector< Function< T, NDIM > > &	v,
		unsigned int	blk = 1,
		bool	fence = true
	)

Generates standard form of a vector of functions.

References madness::WorldGopInterface::fence(), madness::World::gop, PROFILE_BLOCK, and v.

START_TIMER()

static void madness::START_TIMER ( World &  world )

static

References cpu_time(), madness::WorldGopInterface::fence(), madness::World::gop, sss, ttt, and wall_time().

Referenced by madness::SCF::analyze_vectors(), KPeriodicBSHOperator::apply(), apply_potential(), madness::SCF::apply_potential(), madness::SCF::compute_residual(), madness::SCF::derivatives(), madness::SCF::diag_fock_matrix(), madness::SCF::dipole(), madness::SCF::do_plots(), madness::SCF::initial_guess(), madness::SCF::kinetic_energy_matrix(), main(), make_coulomb_potential(), make_density(), madness::SCF::make_fock_matrix(), make_kinetic_matrix(), make_lda_potential(), madness::SCF::make_nuclear_potential(), Calculation::make_reference(), Calculation::make_Upsi(), makeao(), orthogonalize(), madness::SCF::orthonormalize(), madness::SCF::solve(), test_coulomb(), test_cross(), test_diff(), test_inner(), test_matrix_mul_sparse(), test_op(), test_rot(), test_transform(), and madness::SCF::update_subspace().

startup()

void madness::startup	(	World &	world,
		int	argc,
		char **	argv,
		bool	doprint = false,
		bool	make_stdcout_nice_to_reals = true
	)

References arg(), cpu_frequency(), madness::WorldGopInterface::fence(), gauss_legendre_test(), madness::World::gop, init_tensor_lapack(), initialize_legendre_stuff(), load_coeffs(), load_quadrature(), MADNESS_CHECK, print(), madness::World::rank(), redirectio(), madness::FunctionDefaults< NDIM >::set_defaults(), madness::World::size(), test_two_scale_coefficients(), time_transform(), and xterm_debug().

Referenced by main(), main(), TEST_CASE(), test_G_R_vectors(), test_gaussian_num_coeffs(), test_he(), test_nuclear_energy(), test_nuclear_potential(), test_nuclear_potential2(), test_nuclear_potential3(), test_nuclear_potential_big_unit_cell(), testNavierStokes(), and testPeriodicCoulomb3d().

stringify()

template<typename T >

static std::string madness::stringify ( T  arg )

static

References arg(), and MADNESS_EXCEPTION.

Referenced by madness::OEP::analyze(), madness::Nemo::compute_all_cphf(), madness::Nemo::compute_nemo_potentials(), madness::Zcis::compute_potentials(), madness::smooth< T, NDIM >::gaussian_smoothing(), madness::BasisFunctions::guess_virtuals_internal(), madness::OEP::iterate(), madness::Zcis::iterate(), madness::CC2::iterate_pair(), madness::CCPair::load_pair(), madness::ElectronPair::load_pair(), main(), madness::guessfactory::make_auto_polynom_strings(), madness::CCFunction< T, NDIM >::name(), madness::CCPair::name(), madness::Znemo::save_orbitals(), madness::smooth< T, NDIM >::smooth_density_from_orbitals(), solve(), madness::MP2::solve_coupled_equations(), madness::Nemo::solve_cphf(), madness::MP2::solve_residual_equations(), madness::CCPair::store_pair(), madness::ElectronPair::store_pair(), madness::smooth< T, NDIM >::test_1d(), test_adaptive_tree(), test_modified(), test_spherical_box(), and madness::Nemo::value().

sub() [1/3]

template<typename L , typename R , std::size_t NDIM>

Function<TENSOR_RESULT_TYPE(L,R),NDIM> madness::sub	(	const Function< L, NDIM > &	left,
		const Function< R, NDIM > &	right,
		bool	fence = true
	)

Same as operator- but with optional fence and no automatic compression.

References gaxpy_oop(), L, R, and TENSOR_RESULT_TYPE().

Referenced by madness::TDHF::apply_G(), madness::Solver< T, NDIM >::compute_residual(), madness::SCF::compute_residual(), Calculation::compute_residuals(), madness::Znemo::do_step_restriction(), madness::SCF::do_step_restriction(), exchange_anchor_test(), exchange_anchor_test(), madness::TDHF::get_tda_potential(), madness::CC2::iterate_singles(), madness::TDHF::iterate_vectors(), madness::Nemo::kinetic_energy_potential(), madness::DNuclear< T, NDIM >::operator()(), operator-(), operator-(), q_c(), sub(), update(), and madness::SubspaceK< T, NDIM >::update_subspace().

sub() [2/3]

template<typename T , typename R , std::size_t NDIM>

std::vector< Function<TENSOR_RESULT_TYPE(T,R), NDIM> > madness::sub	(	World &	world,
		const std::vector< Function< T, NDIM > > &	a,
		const std::vector< Function< R, NDIM > > &	b,
		bool	fence = true
	)

Returns new vector of functions — q[i] = a[i] - b[i].

References a, b, compress(), madness::WorldGopInterface::fence(), madness::World::gop, MADNESS_ASSERT, NDIM, PROFILE_BLOCK, R, sub(), T(), and TENSOR_RESULT_TYPE().

sub() [3/3]

template<typename T , typename R , std::size_t NDIM>

std::vector< Function<TENSOR_RESULT_TYPE(T,R), NDIM> > madness::sub	(	World &	world,
		const std::vector< Function< T, NDIM > > &	a,
		const std::vector< Function< R, NDIM > > &	b,
		bool	fence = true,
		unsigned int	blk = 1
	)

Returns new vector of functions — q[i] = a[i] - b[i].

References a, b, compress(), madness::WorldGopInterface::fence(), madness::World::gop, MADNESS_ASSERT, NDIM, PROFILE_BLOCK, R, sub(), T(), and TENSOR_RESULT_TYPE().

sum()

template<typename T , std::size_t NDIM>

Function<T, NDIM> madness::sum	(	World &	world,
		const std::vector< Function< T, NDIM > > &	f,
		bool	fence = true
	)

Returns new function — q = sum_i f[i].

References compress(), madness::FunctionFactory< T, NDIM >::compressed(), f, madness::WorldGopInterface::fence(), madness::Function< T, NDIM >::gaxpy(), and madness::World::gop.

Referenced by a(), madness::Molecule::atomic_attraction_potential(), b(), checksum_file(), chunk_example(), madness::F12Potentials::compute_cispd_f12_energies(), madness::NemoBase::compute_density(), madness::Nemo::compute_energy_regularized(), madness::NemoBase::compute_kinetic_energy2(), madness::OEP::compute_Pauli_kinetic_density(), div(), do_adq(), Node::do_sum(), doit(), dot(), dVdx(), dVdy(), dVdz(), errsq(), madness::FunctionImpl< T, NDIM >::eval_cube(), madness::AtomicBasisSet::eval_guess_density(), madness::AtomicBasis::eval_guess_density(), madness::ContractedGaussianShell::eval_radial(), fit(), gauss_legendre_test(), gaussian_func(), madness::PNO::get_average_rank(), madness::WorldDCPmapInterface< keyT >::global_size(), guess(), guess1s(), guess2s(), madness::Nemo::hessian(), TTT::hugh(), inner_func(), madness::FunctionImpl< T, NDIM >::inner_local(), inner_result(), madness::Nemo::kinetic_energy_potential(), madness::WorldDCPmapInterface< keyT >::local_size(), main(), A::member(), madness::Molecule::molecular_core_potential(), mTxmT(), madness::SeparatedConvolution< Q, NDIM >::munorm2_ns(), mxmT(), mxmT_reference(), madness::Molecule::n_core_orb_all(), madness::FunctionImpl< T, NDIM >::nCoeff(), madness::FunctionImpl< T, NDIM >::norm_tree_op(), madness::ContractedGaussianShell::normalize(), MolecularEntity::nuclear_attraction_potential(), madness::Molecule::nuclear_attraction_potential(), madness::Molecule::nuclear_dipole(), madness::Molecule::nuclear_repulsion_derivative(), MolecularEntity::nuclear_repulsion_energy(), madness::Molecule::nuclear_repulsion_energy(), madness::Molecule::nuclear_repulsion_second_derivative(), MolecularGuessDensityFunctor::operator()(), AtomicBasisFunctor< Q >::operator()(), NuclearDensityFunctor::operator()(), madness::WSTAtomicBasisFunctor::operator()(), Gaussian< T, NDIM >::operator()(), HeElectronicChargeDensityIGuess< T, NDIM >::operator()(), HeNuclearChargeDensityIGuess< T, NDIM >::operator()(), madness::ComplexExp< NDIM >::operator()(), DerivativeGaussian< T, NDIM >::operator()(), GaussianPotential::operator()(), madness::FunctionImpl< T, NDIM >::do_inner_local< R >::operator()(), BoysLocalization::operator()(), plot_line(), Calculation::plot_p(), madness::PNO::print_ranks(), madness::CCPairFunction< T, NDIM >::project_out_op_decomposed(), madness::FunctionImpl< T, NDIM >::real_size(), Adder::run(), madness::SDFEllipsoid::sdf(), madness::FunctionImpl< T, NDIM >::size(), madness::ConcurrentHashMap< keyT, valueT, hashfunT >::size(), Test7(), test_add(), test_xc2(), testf(), MolecularEntity::total_nuclear_charge(), madness::Molecule::total_nuclear_charge(), madness::FunctionImpl< T, NDIM >::trace_local(), madness::FunctionImpl< T, NDIM >::tree_size(), and V().

svd() [1/11]

template<>

void madness::svd	(	char	jobu,
		char	jobvt,
		integer	m,
		integer	n,
		complex_real4 *	A,
		integer	lda,
		real4 *	S,
		complex_real4 *	U,
		integer	ldu,
		complex_real4 *	VT,
		integer	ldvt
	)

References cgesvd_(), LINALG_ASSERT, m, and madness::cblas::to_cptr().

svd() [2/11]

template<>

void madness::svd	(	char	jobu,
		char	jobvt,
		integer	m,
		integer	n,
		complex_real8 *	A,
		integer	lda,
		real8 *	S,
		complex_real8 *	U,
		integer	ldu,
		complex_real8 *	VT,
		integer	ldvt
	)

References LINALG_ASSERT, m, madness::cblas::to_zptr(), and zgesvd_().

svd() [3/11]

template<>

void madness::svd	(	char	jobu,
		char	jobvt,
		integer	m,
		integer	n,
		real4 *	A,
		integer	lda,
		real4 *	S,
		real4 *	U,
		integer	ldu,
		real4 *	VT,
		integer	ldvt
	)

References LINALG_ASSERT, m, and sgesvd_().

svd() [4/11]

template<>

void madness::svd	(	char	jobu,
		char	jobvt,
		integer	m,
		integer	n,
		real8 *	A,
		integer	lda,
		real8 *	S,
		real8 *	U,
		integer	ldu,
		real8 *	VT,
		integer	ldvt
	)

References dgesvd_(), LINALG_ASSERT, and m.

svd() [5/11]

template<typename T >

void madness::svd	(	char	jobu,
		char	jobvt,
		integer	m,
		integer	n,
		T *	A,
		integer	lda,
		typename detail::real_type< T >::type *	S,
		T *	U,
		integer	ldu,
		T *	VT,
		integer	ldvt
	)

Compute the SVD via LAPACK.

svd() [6/11]

template void madness::svd	(	const Tensor< double > &	a,
		Tensor< double > &	U,
		Tensor< Tensor< double >::scalar_type > &	s,
		Tensor< double > &	VT
	)

svd() [7/11]

template void madness::svd	(	const Tensor< double_complex > &	a,
		Tensor< double_complex > &	U,
		Tensor< Tensor< double_complex >::scalar_type > &	s,
		Tensor< double_complex > &	VT
	)

svd() [8/11]

template void madness::svd	(	const Tensor< float > &	a,
		Tensor< float > &	U,
		Tensor< Tensor< float >::scalar_type > &	s,
		Tensor< float > &	VT
	)

svd() [9/11]

template void madness::svd	(	const Tensor< float_complex > &	a,
		Tensor< float_complex > &	U,
		Tensor< Tensor< float_complex >::scalar_type > &	s,
		Tensor< float_complex > &	VT
	)

svd() [10/11]

template<typename T >

std::tuple<Tensor<T>, Tensor< typename Tensor<T>::scalar_type >, Tensor<T> > madness::svd

(

const Tensor< T > &

A

)

SVD - MATLAB syntax.

call as auto [U,s,VT] = svd(A); with A=U*S*VT

References svd().

svd() [11/11]

template<typename T >

void madness::svd	(	const Tensor< T > &	a,
		Tensor< T > &	U,
		Tensor< typename Tensor< T >::scalar_type > &	s,
		Tensor< T > &	VT
	)

Compute the singluar value decomposition of an n-by-m matrix using *gesvd.

Computes singular value decomposition of matrix.

Returns via arguments U, s, VT where

A = U * diag(s) * VT for A real A = U * diag(s) * VH for A complex

or

UT * A * V = diag(s) for A real UH * A * V = diag(s) for A complex

If A is [m,n] and r=min(m,n) then we have U[m,r], s[r], and VT[r,n]

On failure, throws TensorException with value set to Lapack's info.

References A(), a, copy(), gesvd_(), m, mask_info(), max, madness::Tensor< T >::ptr(), and TENSOR_ASSERT.

Referenced by madness::SVDTensor< T >::compute_svd(), madness::SVDTensor< T >::compute_svd_from_range(), DF::diagonalize(), madness::SCF::initial_guess(), madness::ConvolutionData1D< Q >::make_approx(), madness::RandomizedMatrixDecomposition< T >::make_SVD_decaying_matrix(), ortho3(), ortho5(), madness::SVDTensor< T >::recompute_from_range(), madness::LowRankFunction< T, NDIM, LDIM >::reorthonormalize(), madness::TensorTrain< T >::splitdim(), svd(), test_constructor(), test_stuff(), test_svd(), and madness::Localizer::undo_rotation().

svd_result() [1/5]

template void madness::svd_result	(	Tensor< double > &	a,
		Tensor< double > &	U,
		Tensor< Tensor< double >::scalar_type > &	s,
		Tensor< double > &	VT,
		Tensor< double > &	work
	)

svd_result() [2/5]

template void madness::svd_result	(	Tensor< double_complex > &	a,
		Tensor< double_complex > &	U,
		Tensor< Tensor< double_complex >::scalar_type > &	s,
		Tensor< double_complex > &	VT,
		Tensor< double_complex > &	work
	)

svd_result() [3/5]

template void madness::svd_result	(	Tensor< float > &	a,
		Tensor< float > &	U,
		Tensor< Tensor< float >::scalar_type > &	s,
		Tensor< float > &	VT,
		Tensor< float > &	work
	)

svd_result() [4/5]

template void madness::svd_result	(	Tensor< float_complex > &	a,
		Tensor< float_complex > &	U,
		Tensor< Tensor< float_complex >::scalar_type > &	s,
		Tensor< float_complex > &	VT,
		Tensor< float_complex > &	work
	)

svd_result() [5/5]

template<typename T >

void madness::svd_result	(	Tensor< T > &	a,
		Tensor< T > &	U,
		Tensor< typename Tensor< T >::scalar_type > &	s,
		Tensor< T > &	VT,
		Tensor< T > &	work
	)

same as svd, but it optimizes away the tensor construction: a = U * diag(s) * VT

note that S and VT are swapped in the calling list for c/fortran consistency!

Parameters

[in,out]	a	a (m,n) matrix to be svd'ed; upon return will hold VT the first min(m,n) rows of VT, stored rowwise
[in,out]	U	left singular vectors, stored columnwise
[in,out]	s	the singular values
[in,out]	VT	not referenced
[in,out]	work	work array; optimial length lwork: lwork = max<integer>(3*min(m,n)+max(m,n),5*min(m,n)-4)*32;

References a, gesvd_(), m, mask_info(), madness::Tensor< T >::ptr(), madness::BaseTensor::size(), and TENSOR_ASSERT.

Referenced by madness::TensorTrain< T >::decompose(), rank_revealing_decompose(), and madness::TensorTrain< T >::truncate().

swap() [1/2]

template<typename T , typename U >

void madness::swap	(	RemoteReference< T > &	l,
		RemoteReference< U > &	r
	)

Swap the two remote references.

Parameters

l	The left reference to be swapped with r
r	The right reference to be swapped with l

Note

T* must be implicitly convertible to U* and vis versa.

References madness::RemoteReference< T >::swap().

Referenced by madness::RemoteReference< T >::swap().

swap() [2/2]

template<typename T , std::size_t N>

void madness::swap	(	Vector< T, N > &	l,
		Vector< T, N > &	r
	)

Swap the contents of two Vectors.

Template Parameters

T	The type of data stored in the Vectors.
N	The size of the Vectors.

Parameters

[in,out]	l	One Vector.
[in,out]	r	The other Vector.

References madness::Vector< T, N >::swap().

Referenced by madness::Fock< T, NDIM >::Fock(), madness::TensorIterator< T, Q, R >::TensorIterator(), madness::SRConf< T >::add_SVD(), madness::SRConf< T >::append(), madness::CCPairFunction< T, NDIM >::apply(), madness::SeparatedConvolution< Q, NDIM >::apply_transformation(), madness::SeparatedConvolution< Q, NDIM >::apply_transformation2(), DF::diagonalize(), fast_transform(), PNOTensors::Tensor_IJ_IK< T >::get(), PNOTensors::Tensor_IJ_KJ< T >::get(), madness::CC2::initialize_pairs(), inner(), madness::SRConf< T >::inplace_add(), jacobi(), madness::FunctionImpl< T, NDIM >::do_map_and_mirror::operator()(), slymer::PolynomialCoeffs::operator+=(), madness::cartesian_grid< NDIM >::operator=(), madness::LowRankFunction< T, NDIM, LDIM >::operator=(), madness::SVDTensor< T >::orthonormalize(), madness::LBNodeDeux< NDIM >::partition(), random_perm(), slymer::read_endian(), slymer::NWChem_Interface::read_movecs(), PNOTensors::Tensor_IJ_IK< T >::set(), PNOTensors::Tensor_IJ_KJ< T >::set(), madness::WorldGopInterface::set_max_reducebcast_msg_size(), madness::TDHF::solve_cis(), madness::TwoBodyFunctionSeparatedComponent< T, NDIM >::swap_particles_inplace(), madness::Molecule::swapaxes(), test_lowrank_function(), madness::Localizer::undo_reordering(), madness::Zcis::value(), and madness::FunctionImpl< T, NDIM >::vtransform_doit().

swap_particles()

template<typename T , std::size_t NDIM>

std::enable_if_t<NDIM%2==0, Function<T,NDIM> > madness::swap_particles

(

const Function< T, NDIM > &

f

)

swap particles 1 and 2

param[in] f a function of 2 particles f(1,2) return the input function with particles swapped g(1,2) = f(2,1)

References d(), f, mapdim(), and NDIM.

Referenced by madness::MP2::asymmetry(), madness::CC2::compute_local_coupling(), and madness::TwoBodyFunctionPureComponent< T, NDIM >::swap_particles_inplace().

syev() [1/4]

template void madness::syev	(	const Tensor< double > &	A,
		Tensor< double > &	V,
		Tensor< Tensor< double >::scalar_type > &	e
	)

syev() [2/4]

template void madness::syev	(	const Tensor< double_complex > &	A,
		Tensor< double_complex > &	V,
		Tensor< Tensor< double_complex >::scalar_type > &	e
	)

syev() [3/4]

template<typename T >

std::tuple<Tensor< typename Tensor<T>::scalar_type >, Tensor<T> > madness::syev

(

const Tensor< T > &

A

)

Solves symmetric or Hermitian eigenvalue problem - MATLAB syntax.

call as auto [eval, evec] = syev(A);

References e(), syev(), and V().

syev() [4/4]

template<typename T >

void madness::syev	(	const Tensor< T > &	A,
		Tensor< T > &	V,
		Tensor< typename Tensor< T >::scalar_type > &	e
	)

Real-symmetric or complex-Hermitian eigenproblem.

Solves symmetric or Hermitian eigenvalue problem.

A is a real symmetric or complex Hermitian matrix. Return V and e where V is a matrix whose columns are the eigenvectors and e is a vector containing the corresponding eigenvalues. If the LAPACK routine fails, it raises a TensorException with value=infor. The input matrix is unchanged. The eigenvalues are sorted into ascending order. s/dsyev are used for real symmetric matrices; c/zheev are used for complex Hermitian.

The results will satisfy A*V(_,i) = V(_,i)*e(i).

References e(), mask_info(), max, madness::Tensor< T >::ptr(), syev_(), TENSOR_ASSERT, transpose(), and V().

Referenced by madness::projector_irrep::apply_symmetry_operators(), madness::PNO::canonicalize(), madness::OEP::compute_and_print_final_energies(), compute_frequencies(), madness::OEP::compute_ocep_correction(), madness::Solver< T, NDIM >::csqrt(), madness::Localizer::determine_frozen_orbitals(), fixphases(), madness::Solver< T, NDIM >::initial_guess(), madness::Zcis::make_guess(), madness::TDHF::make_guess_from_initial_diagonalization(), QuasiNewton::new_search_direction(), madness::QuasiNewton::new_search_direction(), madness::MolecularOptimizer::new_search_direction2(), madness::MolecularOptimizer::optimize_quasi_newton(), madness::Molecule::orient(), orth(), ortho3(), ortho5(), orthonormalize_canonical(), orthonormalize_symmetric(), madness::PNO::pno_compress(), madness::Solver< T, NDIM >::print_fock_matrix_eigs(), projector_external_dof(), madness::MolecularOptimizer::projector_external_dof(), madness::LowRankFunction< T, NDIM, LDIM >::reorthonormalize(), madness::Solver< T, NDIM >::solve(), madness::OEP::solve(), syev(), and test_syev().

sygv() [1/3]

template void madness::sygv	(	const Tensor< double > &	A,
		const Tensor< double > &	B,
		int	itype,
		Tensor< double > &	V,
		Tensor< Tensor< double >::scalar_type > &	e
	)

sygv() [2/3]

template void madness::sygv	(	const Tensor< double_complex > &	A,
		const Tensor< double_complex > &	B,
		int	itype,
		Tensor< double_complex > &	V,
		Tensor< Tensor< double_complex >::scalar_type > &	e
	)

sygv() [3/3]

template<typename T >

void madness::sygv	(	const Tensor< T > &	A,
		const Tensor< T > &	B,
		int	itype,
		Tensor< T > &	V,
		Tensor< typename Tensor< T >::scalar_type > &	e
	)

Generalized real-symmetric or complex-Hermitian eigenproblem.

Solves symmetric or Hermitian generalized eigenvalue problem.

This from the LAPACK documentation

S/DSYGV computes all the eigenvalues, and optionally, the eigenvectors
of a real generalized symmetric-definite eigenproblem, of the form
A*x=(lambda)*B*x, A*Bx=(lambda)*x, or B*A*x=(lambda)*x.  Here A and B
are assumed to be symmetric and B is also positive definite.

C/ZHEGV computes all the eigenvalues, and optionally, the eigenvectors
of a complex generalized Hermitian-definite eigenproblem, of the form
A*x=(lambda)*B*x, A*Bx=(lambda)*x, or B*A*x=(lambda)*x. Here A and B
are assumed to be Hermitian and B is also positive definite.

ITYPE   (input) INTEGER
Specifies the problem type to be solved:
= 1:  A*x = (lambda)*B*x
= 2:  A*B*x = (lambda)*x
= 3:  B*A*x = (lambda)*x

References b, e(), mask_info(), max, madness::Tensor< T >::ptr(), sygv_(), TENSOR_ASSERT, transpose(), and V().

Referenced by madness::Znemo::canonicalize(), diag_and_transform(), DF::diagonalize(), madness::Solver< T, NDIM >::do_rhs(), madness::Solver< T, NDIM >::do_rhs_simple(), MiniDFT::doit(), doit(), madness::Solver< T, NDIM >::initial_guess(), initial_guess(), main(), madness::Zcis::orthonormalize(), madness::Solver< T, NDIM >::print_fock_matrix_eigs(), madness::Solver< T, NDIM >::print_potential_matrix_eigs(), sygvp(), and test_sygv().

sygvp()

template<typename T >

void madness::sygvp	(	World &	world,
		const Tensor< T > &	a,
		const Tensor< T > &	B,
		int	itype,
		Tensor< T > &	V,
		Tensor< typename Tensor< T >::scalar_type > &	e
	)

References a, madness::WorldGopInterface::broadcast_serializable(), e(), madness::World::gop, sygv(), and V().

Referenced by madness::Zcis::canonicalize(), get_fock_transformation(), madness::SCF::get_fock_transformation(), madness::Znemo::hcore_guess(), madness::SCF::initial_guess(), and madness::SCF::solve().

symbol_to_atomic_number()

unsigned int madness::symbol_to_atomic_number

(

const std::string &

symbol

)

References atomic_data, lowercase(), NUMBER_OF_ATOMS_IN_TABLE, and madness::AtomicData::symbol_lowercase.

Referenced by Calculation::Calculation(), get_charge_from_file(), madness::SCF::initial_guess(), madness::GTHPseudopotential< Q >::load_pseudo_from_file(), madness::Molecule::read(), MolecularEntity::read_file(), madness::AtomicBasisSet::read_file(), madness::CorePotentialManager::read_file(), madness::AtomicBasisSet::read_nw_file(), madness::Molecule::read_xyz(), and madness::InitParameters::readnw().

symmetrize()

template<typename T , std::size_t NDIM>

Function<T,NDIM> madness::symmetrize	(	const Function< T, NDIM > &	f,
		const std::string	symmetry,
		bool	fence = true
	)

symmetrize a function

Parameters

[in]

symmetry

possibilities are: (anti-) symmetric particle permutation ("sy_particle", "antisy_particle") symmetric mirror plane ("xy", "xz", "yz")

Returns

a new function symmetrized according to the input parameter

References f, madness::Function< T, NDIM >::get_impl(), MADNESS_ASSERT, MADNESS_EXCEPTION, madness::Function< T, NDIM >::mapdim(), NDIM, and print().

Referenced by test_adaptive_tree().

tensor_abs()

template<typename Q >

Tensor<Q> madness::tensor_abs

(

const Tensor< std::complex< Q > > &

c

)

References abs(), BINARY_OPTIMIZED_ITERATOR, c, and Q().

tensor_real2complex()

template<typename Q >

Tensor< std::complex<Q> > madness::tensor_real2complex

(

const Tensor< Q > &

r

)

References BINARY_OPTIMIZED_ITERATOR, c, madness::BaseTensor::dims(), madness::BaseTensor::ndim(), and Q().

TENSOR_RESULT_TYPE() [1/3]

template<typename T , typename R , std::size_t NDIM>

madness::TENSOR_RESULT_TYPE	(	T	,
		R
	)		const

Computes the scalar/inner product between two functions.

In Maple this would be int(conjugate(f(x))*g(x),x=-infinity..infinity)

inner function with right signature for the nonlinear solver this is needed for the KAIN solvers and other functions

References f, g, inner(), and MADNESS_ASSERT.

Referenced by add(), madness::SeparatedConvolution< Q, NDIM >::apply(), apply(), madness::SeparatedConvolution< Q, NDIM >::apply2(), madness::SeparatedConvolution< Q, NDIM >::apply2_lowdim(), apply_1d_realspace_push(), apply_only(), binary_op(), cross(), fast_transform(), gaxpy(), gaxpy_oop(), general_transform(), inner(), inner_result(), innerXX(), matrix_inner(), matrix_inner_old(), mul(), mul_sparse(), operator*(), outer(), sub(), test_cross(), test_inner(), madness::SRConf< T >::trace(), madness::TensorTrain< T >::trace(), transform(), transform_dir(), transform_reconstructed(), and vmulXX().

TENSOR_RESULT_TYPE() [2/3]

template<typename T , typename opT , std::size_t NDIM>

madness::TENSOR_RESULT_TYPE	(	T	,
		typename opT::value_type
	)		const

Computes the scalar/inner product between an MRA function and an external functor.

Currently this defaults to inner_adaptive, which might be more expensive than inner_ext since it loops over all leaf nodes. If you feel inner_ext is more efficient you need to call it directly

Parameters

[in]	f	MRA function
[in]	g	functor

Returns

inner(f,g)

References PROFILE_FUNC.

TENSOR_RESULT_TYPE() [3/3]

template<typename T , typename opT , std::size_t NDIM>

madness::TENSOR_RESULT_TYPE	(	T	,
		typename opT::value_type
	)		const &

Computes the scalar/inner product between an MRA function and an external functor.

Currently this defaults to inner_adaptive, which might be more expensive than inner_ext since it loops over all leaf nodes. If you feel inner_ext is more efficient you need to call it directly

Parameters

[in]	g	functor
[in]	f	MRA function

Returns

inner(f,g)

References f, g, and inner().

tensor_ximag()

template<typename Q >

Tensor<Q> madness::tensor_ximag

(

const Tensor< std::complex< Q > > &

c

)

References BINARY_OPTIMIZED_ITERATOR, c, imag(), and Q().

tensor_xreal()

template<typename Q >

Tensor<Q> madness::tensor_xreal

(

const Tensor< std::complex< Q > > &

c

)

References BINARY_OPTIMIZED_ITERATOR, c, Q(), and real().

test_1d_functor()

static double madness::test_1d_functor ( const coord_1d &  x )

static

Referenced by madness::smooth< T, NDIM >::test_1d().

test_autoc()

bool madness::test_autoc

(

)

References autocorr_filename, and checksum_file().

Referenced by read_data().

test_cholesky()

template<typename T >

double madness::test_cholesky

(

int

n

)

References a, aa, cholesky(), copy(), inner(), and my_conj_transpose().

test_exchange()

template<typename T >

int madness::test_exchange

(

World &

world

)

References alpha, conj(), exchange_anchor_test(), madness::Tensor< T >::fill(), madness::FunctionFactory< T, NDIM >::functor(), madness::FunctionDefaults< NDIM >::get_thresh(), K(), name(), print(), madness::World::rank(), madness::FunctionDefaults< NDIM >::set_cubic_cell(), madness::FunctionDefaults< NDIM >::set_thresh(), smalltest, T(), thresh, madness::FunctionFactory< T, NDIM >::thresh(), and madness::FunctionFactory< T, NDIM >::truncate_on_project().

Referenced by main().

test_gelss()

template<typename T >

double madness::test_gelss	(	int	n,
		int	nrhs
	)

References a, b, e(), gelss(), and inner().

test_gesv()

template<typename T >

double madness::test_gesv	(	int	n,
		int	nrhs
	)

References a, b, gesv(), and inner().

test_inverse()

template<typename T >

double madness::test_inverse

(

int

n

)

Example and test code for interface to LAPACK SVD interfae.

References A(), inner(), inverse(), madness::Tensor< T >::normf(), and madness::BaseTensor::size().

test_qr()

template<typename T >

double madness::test_qr

(

)

References copy(), error(), madness::Tensor< T >::fillrandom(), inner(), lq(), m, qr(), R, and RandomValue< long >().

test_rnlp()

bool madness::test_rnlp

(

)

References a, abs(), e(), exact, g, max, and pi.

Referenced by test_op().

test_rr_cholesky()

template<typename T >

double madness::test_rr_cholesky

(

int

n

)

References a, aa, copy(), inner(), my_conj_transpose(), P, rr_cholesky(), and transpose().

test_svd()

template<typename T >

double madness::test_svd	(	int	n,
		int	m
	)

Example and test code for interface to LAPACK SVD interfae.

References a, b, k, m, svd(), and T().

test_syev()

template<typename T >

double madness::test_syev

(

int

n

)

References _(), a, e(), inner(), max, syev(), transpose(), and V().

test_sygv()

template<typename T >

double madness::test_sygv

(

int

n

)

References _(), a, b, e(), inner(), max, my_conj_transpose(), sygv(), T(), and V().

test_tensor_lapack()

bool madness::test_tensor_lapack

(

)

Test the Tensor-LAPACK interface ... currently always returns true!

Dunno.

Runs the tensor test code, returns true on success

References e().

Referenced by main().

test_two_scale_coefficients()

bool madness::test_two_scale_coefficients

(

)

Test the two scale coefficients for orthogonality

References e(), inner(), k, kmax, and two_scale_hg().

Referenced by startup().

testf()

static double madness::testf ( int  n, double  x  )

static

test function for gauss_legendre_test

References sum().

Referenced by gauss_legendre_test().

time_transform()

static void madness::time_transform ( World &  world, int &  mflopslo, int &  mflopshi  )

static

References c, cpu_time(), e(), fast_transform(), madness::World::gop, madness::WorldGopInterface::max(), madness::WorldGopInterface::min(), N, and w().

Referenced by startup().

to_conjugate_response_matrix()

auto madness::to_conjugate_response_matrix

(

const X_space &

x

)

-> response_matrix

References b.

to_conjugate_X_space()

auto madness::to_conjugate_X_space

(

const response_matrix &

x

)

-> X_space

response_matrix [x,y] -> Xspace X.x=y X.y=conjugate(x)

Parameters

x

Returns

X_space

References b, madness::World::size(), transform(), and xi.

to_flattened_vector()

auto madness::to_flattened_vector

(

const X_space &

x

)

-> vector_real_function_3d

Flattens all response functions into a single vector of functions.

Parameters

x

Returns

References b, copy(), and to_response_matrix().

Referenced by madness::X_space::component_norm2s().

to_json()

void madness::to_json

(

nlohmann::json &

j

)

Referenced by madness::MolecularEnergy::output_calc_info_schema(), madness::SCF::output_calc_info_schema(), and TEST_CASE().

to_response_matrix()

auto madness::to_response_matrix

(

const X_space &

x

)

-> response_matrix

@ Converts Xspace object to response_matrix object

Parameters

x

Returns

response_matrix

References b.

Referenced by ground_exchange(), madness::X_space::norm2s(), to_flattened_vector(), and madness::X_space::truncate().

to_response_vector()

auto madness::to_response_vector

(

const vector_real_function_3d &

vec

)

-> vector_real_function_3d

@phi -> [phi conjugate(phi)]

Parameters

vec

Returns

vector_real_function_3d

References copy(), and vec().

to_X_space()

auto madness::to_X_space

(

const response_matrix &

x

)

-> X_space

References b, copy(), and madness::World::size().

Referenced by molresponseExchange().

transform() [1/8]

template<typename R , typename Q >

GenTensor<TENSOR_RESULT_TYPE(R,Q)> madness::transform	(	const GenTensor< R > &	t,
		const Tensor< Q > &	c
	)

Often used to transform all dimensions from one basis to another

result(i,j,k...) <-- sum(i',j', k',...) t(i',j',k',...) c(i',i) c(j',j) c(k',k) ...

The input dimensions of t must all be the same and agree with the first dimension of c . The dimensions of c may differ in size.

transform() [2/8]

template<typename R , typename Q >

SVDTensor<TENSOR_RESULT_TYPE(R,Q)> madness::transform	(	const SVDTensor< R > &	t,
		const Tensor< Q > &	c
	)

transform() [3/8]

template<class T , class Q >

TensorTrain<TENSOR_RESULT_TYPE(T,Q)> madness::transform	(	const TensorTrain< T > &	t,
		const Tensor< Q > &	c
	)

transform each dimension with the same operator matrix

result(i,j,k...) <– sum(i',j', k',...) t(i',j',k',...) c(i',i) c(j',j) c(k',k) ... TODO: merge this with general_transform

References c, copy(), madness::TensorTrain< T >::core, d(), madness::BaseTensor::dims(), inner(), inner_result(), max, madness::BaseTensor::ndim(), Q(), r2(), T(), TENSOR_RESULT_TYPE(), and madness::TensorTrain< T >::zero_rank.

transform() [4/8]

template<typename L , typename R , std::size_t NDIM>

std::vector< Function<TENSOR_RESULT_TYPE(L,R),NDIM> > madness::transform	(	World &	world,
		const std::vector< Function< L, NDIM > > &	v,
		const Tensor< R > &	c,
		const double	tol,
		const unsigned int	blki = 1,
		const bool	fence
	)

References c, compress(), madness::WorldGopInterface::fence(), madness::World::gop, L, m, MADNESS_ASSERT, NDIM, PROFILE_BLOCK, R, TENSOR_RESULT_TYPE(), and v.

transform() [5/8]

template<typename L , typename R , std::size_t NDIM>

std::vector< Function<TENSOR_RESULT_TYPE(L,R),NDIM> > madness::transform	(	World &	world,
		const std::vector< Function< L, NDIM > > &	v,
		const Tensor< R > &	c,
		double	tol,
		bool	fence
	)

this version of transform uses Function::vtransform and screens using both elements of c and v

References c, compress(), L, MADNESS_ASSERT, NDIM, PROFILE_BLOCK, R, TENSOR_RESULT_TYPE(), and v.

transform() [6/8]

template<typename T , typename R , std::size_t NDIM>

std::vector< Function<TENSOR_RESULT_TYPE(T,R),NDIM> > madness::transform	(	World &	world,
		const std::vector< Function< T, NDIM > > &	v,
		const DistributedMatrix< R > &	c,
		bool	fence = true
	)

References c, compress(), madness::WorldGopInterface::fence(), madness::World::gop, m, MADNESS_ASSERT, PROFILE_FUNC, R, T(), TENSOR_RESULT_TYPE(), transpose(), and v.

transform() [7/8]

template<typename T , typename R , std::size_t NDIM>

std::vector< Function<TENSOR_RESULT_TYPE(T,R),NDIM> > madness::transform	(	World &	world,
		const std::vector< Function< T, NDIM > > &	v,
		const Tensor< R > &	c,
		bool	fence = true
	)

Transforms a vector of functions according to new[i] = sum[j] old[j]*c[j,i].

Uses sparsity in the transformation matrix — set small elements to zero to take advantage of this.

References c, compress(), madness::WorldGopInterface::fence(), madness::World::gop, m, MADNESS_ASSERT, PROFILE_BLOCK, R, T(), TENSOR_RESULT_TYPE(), and v.

Referenced by madness::BSHApply< T, NDIM >::add_coupling_and_levelshift(), madness::GTHPseudopotential< Q >::apply_potential(), madness::projector_irrep::apply_symmetry_operators(), madness::Zcis::canonicalize(), madness::TDHF::canonicalize(), madness::Znemo::canonicalize(), madness::FunctionCommonFunctionality< T, NDIM >::coeffs2values(), madness::FunctionImpl< T, NDIM >::coeffs2values(), madness::Nemo::compute_cphf_parallel_term(), madness::OEP::compute_energy_weighted_density_local(), madness::CC2::compute_local_coupling(), madness::SCF::compute_residual(), diag_and_transform(), madness::SCF::diag_fock_matrix(), madness::FunctionImpl< T, NDIM >::do_binary_op(), madness::FunctionImpl< T, NDIM >::do_mul(), madness::Solver< T, NDIM >::do_rhs(), madness::Solver< T, NDIM >::do_rhs_simple(), MiniDFT::doit(), doit(), madness::FunctionImpl< T, NDIM >::filter(), fixphases(), madness::Convolution1D< Q >::get_rnlp(), madness::TDHF::get_tda_potential(), madness::StrongOrthogonalityProjector< T, NDIM >::get_vectors_for_outer_product(), madness::Znemo::hcore_guess(), madness::Solver< T, NDIM >::initial_guess(), madness::SCF::initial_guess(), initial_guess(), inner(), madness::OEP::iterate(), Calculation::load_mos(), madness::Localizer::localize(), madness::Nemo::localize(), main(), mix(), madness::Convolution1D< Q >::mod_nonstandard(), madness::FunctionImpl< T, NDIM >::mul(), madness::Convolution1D< Q >::nonstandard(), madness::FunctionImpl< T, NDIM >::NScoeffs2values(), madness::Projector< T, NDIM >::operator()(), madness::FunctionImpl< T, NDIM >::do_unary_op_value_inplace< opT >::operator()(), orth(), orthonormalize(), madness::NemoBase::orthonormalize(), orthonormalize(), madness::Solver< T, NDIM >::orthonormalize(), madness::SCF::orthonormalize(), orthonormalize_canonical(), orthonormalize_cd(), orthonormalize_fock(), orthonormalize_rrcd(), orthonormalize_symmetric(), madness::FunctionImpl< T, NDIM >::parent_to_child(), madness::MolecularOrbitals< T, NDIM >::project_ao(), madness::InitParameters::readnw(), madness::LowRankFunction< T, NDIM, LDIM >::reorthonormalize(), madness::SCF::restart_aos(), madness::Znemo::rotate_subspace(), madness::Nemo::rotate_subspace(), madness::SCF::rotate_subspace(), madness::Localizer::separate_core_valence(), madness::Nemo::solve(), madness::SCF::solve(), madness::Nemo::solve_cphf(), Test7(), test_transform(), madness::PNO::transform_pairs(), madness::FunctionImpl< T, NDIM >::unfilter(), madness::FunctionCommonFunctionality< T, NDIM >::values2coeffs(), madness::FunctionImpl< T, NDIM >::values2coeffs(), and madness::FunctionImpl< T, NDIM >::values2NScoeffs().

transform() [8/8]

template<typename T , typename R , std::size_t NDIM>

std::vector< Function<TENSOR_RESULT_TYPE(T,R),NDIM> > madness::transform	(	World &	world,
		const std::vector< Function< T, NDIM > > &	v,
		const Tensor< R > &	c,
		unsigned int	blki = 1,
		unsigned int	blkj = 1,
		const bool	fence = true
	)

Transforms a vector of functions according to new[i] = sum[j] old[j]*c[j,i].

Uses sparsity in the transformation matrix — set small elements to zero to take advantage of this.

References c, compress(), madness::WorldGopInterface::fence(), gaxpy(), madness::World::gop, m, MADNESS_ASSERT, PROFILE_BLOCK, R, T(), TENSOR_RESULT_TYPE(), and v.

transform_dir() [1/2]

template<typename R , typename Q >

GenTensor<TENSOR_RESULT_TYPE(R,Q)> madness::transform_dir	(	const GenTensor< R > &	t,
		const Tensor< Q > &	c,
		const int	axis
	)

transform_dir(t,c,1) = r(i,j,k,...) = sum(j') t(i,j',k,...) * c(j',j)

Parameters

[in]	t	Tensor to transform (size of dim to be transformed must match size of first dim of c )
[in]	c	Matrix used for the transformation
[in]	axis	Dimension (or axis) to be transformed

Returns

Returns a new, contiguous tensor template <typename R, typename Q>

Referenced by madness::FunctionImpl< T, NDIM >::apply_1d_realspace_push_op(), madness::Derivative< T, NDIM >::do_diff2b(), madness::Derivative< T, NDIM >::do_diff2i(), and madness::SRConf< T >::transform_dir().

transform_dir() [2/2]

template<typename R , typename Q >

SVDTensor<TENSOR_RESULT_TYPE(R,Q)> madness::transform_dir	(	const SVDTensor< R > &	t,
		const Tensor< Q > &	c,
		const int	axis
	)

transform_reconstructed()

template<typename T , typename R , std::size_t NDIM>

std::vector< Function<TENSOR_RESULT_TYPE(T,R),NDIM> > madness::transform_reconstructed	(	World &	world,
		const std::vector< Function< T, NDIM > > &	v,
		const Tensor< R > &	c,
		bool	fence = true
	)

Transforms a vector of functions according to new[i] = sum[j] old[j]*c[j,i].

all trees are in reconstructed state, final trees have to be summed down if no fence is present

References c, change_tree_state(), madness::WorldGopInterface::fence(), get_impl(), madness::World::gop, m, MADNESS_CHECK, MADNESS_CHECK_THROW, PROFILE_BLOCK, R, reconstructed, redundant_after_merge, T(), TENSOR_RESULT_TYPE(), and v.

Referenced by madness::CCPairFunction< T, NDIM >::collect_same_types(), and test_transform().

transpose()

response_space madness::transpose

(

response_space &

f

)

References f, g, m, and MADNESS_ASSERT.

Referenced by madness::Convolution1D< Q >::Convolution1D(), madness::FunctionCommonData< T, NDIM >::_init_quadrature(), madness::FunctionCommonData< T, NDIM >::_init_twoscale(), madness::SCF::analyze_vectors(), madness::PNO::compute_cispd_correction_es(), madness::PNO::compute_cispd_correction_gs(), madness::PNO::compute_cispd_fluctuation_matrix(), madness::Localizer::compute_core_valence_separation_transformation_matrix(), madness::F12Potentials::compute_f12_correction(), madness::PNO::compute_fluctuation_matrix(), madness::F12Potentials::compute_fQg_integrals(), madness::F12Potentials::compute_fQU_integrals(), madness::PNO::compute_projected_mp2_energies(), madness::F12Potentials::compute_regularized_fluctuation_matrix(), madness::SVDTensor< T >::compute_svd(), madness::GenTensor< T >::convert_inplace(), DF::diagonalize(), MiniDFT::doit(), gelss(), geqp3(), gesv(), madness::StrongOrthogonalityProjector< T, NDIM >::get_vectors_for_outer_product(), ggev(), madness::Nemo::hessian(), madness::Derivative< T, NDIM >::initCoefficients(), madness::SCF::initial_guess(), initial_guess(), madness::Localizer::localize(), madness::Nemo::localize(), madness::Localizer::localize_boys(), madness::Localizer::localize_new(), main(), madness::TDHF::make_cis_matrix(), madness::SCF::make_fock_matrix(), madness::AtomicBasisSet::modify_dmat_psp(), my_conj_transpose(), madness::TwoBodyFunctionPureComponent< T, NDIM >::name(), madness::TwoBodyFunctionSeparatedComponent< T, NDIM >::name(), madness::CCPairFunction< T, NDIM >::name(), BoysLocalization::operator()(), orgqr(), ortho5(), orthonormalize_cd(), madness::PNO::orthonormalize_cholesky(), orthonormalize_rrcd(), orthonormalize_symmetric(), projector_external_dof(), madness::MolecularOptimizer::projector_external_dof(), qr(), madness::Derivative< T, NDIM >::read_from_file(), madness::Convolution1D< Q >::rnlij(), madness::SCF::solve(), syev(), sygv(), test_lowrank_function(), test_rr_cholesky(), test_syev(), transform(), and madness::Localizer::undo_rotation().

transposeResponseMatrix()

auto madness::transposeResponseMatrix

(

const response_matrix &

x

)

-> response_matrix

References b, and xi.

truncate() [1/4]

template<typename T , std::size_t NDIM>

std::vector< Function<T,NDIM> > madness::truncate	(	std::vector< Function< T, NDIM > >	v,
		double	tol = 0.0,
		bool	fence = true
	)

Truncates a vector of functions.

Returns

the truncated vector for chaining

References truncate(), and v.

truncate() [2/4]

void madness::truncate	(	World &	world,
		response_space &	v,
		double	tol,
		bool	fence
	)

References MADNESS_ASSERT, and v.

Referenced by madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::ExchangeImpl(), madness::F12Potentials::F12Potentials(), SVPESolver::SVPESolver(), madness::CCPairFunction< T, NDIM >::apply(), KPeriodicBSHOperator::apply(), apply_bsh(), apply_potential(), madness::Diamagnetic_potential_factor::apply_potential(), madness::GTHPseudopotential< Q >::apply_potential(), madness::SCF::apply_potential(), madness::F12Potentials::apply_regularized_potential(), madness::projector_irrep::apply_symmetry_operators(), madness::NuclearCorrelationFactor::apply_U(), apply_U_ncf(), Calculation::calc_optimal_coeffs(), madness::Nemo::compute_all_cphf(), madness::PNO::compute_CIS_potentials(), madness::OEP::compute_coulomb_potential(), madness::Nemo::compute_cphf_parallel_term(), madness::Znemo::compute_current_density(), compute_energy(), madness::Nemo::compute_energy_regularized(), madness::OEP::compute_exchange_potential(), madness::Nemo::compute_fock_matrix(), madness::F12Potentials::compute_fQg_integrals(), madness::F12Potentials::compute_fQU_integrals(), madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::compute_K_tile(), madness::Diamagnetic_potential_factor::compute_nabla_R_div_R(), madness::Nemo::compute_nemo_potentials(), madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::MacroTaskExchangeSimple::compute_offdiagonal_batch_in_symmetric_matrix(), madness::Coulomb< T, NDIM >::compute_potential(), madness::Znemo::compute_potentials(), madness::Zcis::compute_potentials(), madness::SCF::compute_residual(), madness::Znemo::compute_residuals(), madness::Zcis::compute_residuals(), Calculation::compute_residuals(), madness::PNO::compute_V_aj_i(), madness::Znemo::compute_vmat(), madness::PNO::compute_Vreg_aj_i(), madness::F12Potentials::compute_xyab_integrals(), madness::F12Potentials::convolve_with_fg(), madness::F12Potentials::convolve_with_fU(), madness::F12Potentials::convolve_with_local_U(), madness::F12Potentials::convolve_with_nonlocal_U(), madness::F12Potentials::convolve_with_U(), madness::SCF::diag_fock_matrix(), MiniDFT::doit(), doit(), madness::HartreeFock< T, NDIM >::get_coulomb_potential(), madness::TDHF::get_tda_potential(), madness::BasisFunctions::guess_contracted_virtuals_from_file(), madness::Znemo::hcore_guess(), madness::Nemo::hessian(), madness::Solver< T, NDIM >::initial_guess(), madness::SCF::initial_guess(), madness::PNO::initialize_pairs(), madness::CCPairFunction< T, NDIM >::inner_internal(), madness::Znemo::iterate(), madness::OEP::iterate(), iterate(), madness::Zcis::iterate(), madness::CC2::iterate_singles(), madness::TDHF::iterate_vectors(), madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::K_large_memory(), madness::Exchange< T, NDIM >::ExchangeImpl< T, NDIM >::K_small_memory(), Calculation::load_mos(), madness::Localizer::localize(), madness::Nemo::localize(), main(), madness::Znemo::make_bra(), madness::Nemo::make_cphf_constant_term(), madness::Zcis::make_guess(), madness::TDHF::make_guess_from_initial_diagonalization(), madness::Nemo::make_laplacian_density(), madness::TDHF::make_mo_bra(), madness::TDHF::make_mo_ket(), Calculation::make_reference(), GygiPot::make_surfcharge(), madness::MP2::make_Uphi0(), Calculation::make_Upsi(), AnsatzBase::make_vbra(), MiniDFT::makeao(), makeao_slow(), madness::EigSolver< T, NDIM >::multi_solve(), madness::CCConvolutionOperator< T, NDIM >::operator()(), madness::Coulomb< T, NDIM >::MacroTaskCoulomb::operator()(), madness::Nuclear< T, NDIM >::operator()(), madness::LocalPotentialOperator< T, NDIM >::operator()(), madness::BSHApply< T, NDIM >::operator()(), madness::DNuclear< T, NDIM >::operator()(), madness::Projector< T, NDIM >::operator()(), madness::QProjector< T, NDIM >::operator()(), madness::LowRankFunction< T, NDIM, LDIM >::optimize(), madness::LowRankFunction< T, NDIM, LDIM >::orthonormalize(), orthonormalize(), madness::NemoBase::orthonormalize(), orthonormalize(), madness::SCF::orthonormalize(), SurfaceMoleculeInteraction::perturbed_molecular_pot(), madness::LowRankFunctionFactory< T, NDIM, LDIM >::project(), madness::SCF::project(), madness::MolecularOrbitals< T, NDIM >::project_ao(), madness::SCF::project_ao_basis_only(), madness::projector_irrep::project_on_irreps(), GroundStateCalculation::read(), madness::Znemo::read_real_guess(), madness::OEP::recompute_HF(), madness::LowRankFunction< T, NDIM, LDIM >::reorthonormalize(), madness::Solver< T, NDIM >::reproject(), madness::SCF::restart_aos(), schrodinger2dirac(), SVPESolver::solve(), madness::Nemo::solve(), madness::SCF::solve(), madness::MP2::solve_coupled_equations(), madness::Nemo::solve_cphf(), madness::MP2::solve_residual_equations(), test(), madness::PNO::transform_pairs(), madness::X_space::truncate(), truncate(), madness::PNO::truncate_pairs(), madness::SCF::twoint(), update(), MiniDFT::update(), madness::PNO::update_pno(), and madness::Nemo::value().

truncate() [3/4]

template<typename T , std::size_t NDIM>

void madness::truncate	(	World &	world,
		std::vector< Function< T, NDIM > > &	v,
		double	tol = 0.0,
		bool	fence = true
	)

Truncates a vector of functions.

References compress(), madness::WorldGopInterface::fence(), madness::World::gop, NDIM, PROFILE_BLOCK, and v.

truncate() [4/4]

template<typename T , std::size_t NDIM>

void madness::truncate	(	World &	world,
		std::vector< Function< T, NDIM > > &	v,
		double	tol = 0.0,
		unsigned int	blk = 1,
		bool	fence = true
	)

Truncates a vector of functions.

References compress(), madness::WorldGopInterface::fence(), madness::World::gop, PROFILE_BLOCK, and v.

try_two_locks()

bool madness::try_two_locks ( const Mutex &  m1, const Mutex &  m2  )

inline

Attempt to acquire two locks without blocking holding either one.

The code will first attempt to acquire mutex m1 and if successful will then attempt to acquire mutex m2.

References madness::Mutex::try_lock(), and madness::Mutex::unlock().

tt_identity()

template<typename T >

TensorTrain<T> madness::tt_identity	(	const long	ndim,
		const long	k
	)

compute the n-D identity operator with k elements per dimension

References madness::TensorTrain< T >::get_core(), and k.

two_scale_coefficients()

bool madness::two_scale_coefficients	(	int	k,
		Tensor< double > *	h0,
		Tensor< double > *	h1,
		Tensor< double > *	g0,
		Tensor< double > *	g1
	)

Return the two scale coefficients in the Legendre basis.

Returns true on success, false on failure (and prints error message)

References cache, copy(), k, kmax, loaded, and read_twoscale().

Referenced by two_scale_hg().

two_scale_hg()

bool madness::two_scale_hg	(	int	k,
		Tensor< double > *	hg
	)

References k, and two_scale_coefficients().

Referenced by madness::Convolution1D< Q >::Convolution1D(), madness::FunctionCommonData< T, NDIM >::_init_twoscale(), and test_two_scale_coefficients().

type() [1/3]

std::string madness::type ( const EnergyType &  n )

inline

type() [2/3]

std::string madness::type ( const GuessType &  n )

inline

type() [3/3]

std::string madness::type ( const PairType &  n )

inline

Referenced by slymer::GaussianFunction::GaussianFunction(), madness::GFit< T, NDIM >::GFit(), slymer::PrimitiveGaussian::PrimitiveGaussian(), madness::TDHF::apply_G(), madness::SeparatedConvolution< Q, NDIM >::can_combine(), CCConvolutionOperatorPtr(), madness::CCConvolutionOperator< T, NDIM >::clear_intermediates(), madness::detail::compare_fn_addresses(), get_index_of_first_vector_argument(), madness::BasisFunctions::guess_contracted_virtuals_from_file(), madness::BasisFunctions::guess_with_exop(), madness::CCConvolutionOperator< T, NDIM >::init_op(), madness::CC2::initialize_singles(), madness::CCIntermediatePotentials::insert(), madness::CCPairFunction< T, NDIM >::is_convertible_to_pure_no_op(), madness::TDHF::iterate_vectors(), madness::archive::ArchiveLoadImpl< ParallelInputArchive< archiveT >, CCPairFunction< T, NDIM > >::load(), madness::Cloud::load_tuple(), madness::SeparatedConvolution< Q, NDIM >::make_coeff_for_operator(), name(), madness::CCIntermediatePotentials::operator()(), operator<<(), madness::BasisFunctions::print_contracted_basis(), madness::F12Potentials::print_pair_energies(), slymer::NWChem_Interface::read_basis_set(), AtomicBasisSet::read_file(), madness::AtomicBasisSet::read_file(), read_orbital(), madness::CC2::solve_mp2_coupled(), test_combined_operators(), and madness::CCConvolutionOperator< T, NDIM >::update_elements().

TYPEINFO() [1/6]

madness::TYPEINFO	(	0	,
		int	,
		false	,
		true	,
		int	,
		double
	)

TYPEINFO() [2/6]

madness::TYPEINFO	(	1	,
		long	,
		false	,
		true	,
		long	,
		double
	)

TYPEINFO() [3/6]

madness::TYPEINFO	(	2	,
		float	,
		false	,
		true	,
		float	,
		float
	)

TYPEINFO() [4/6]

madness::TYPEINFO	(	3	,
		double	,
		false	,
		true	,
		double	,
		double
	)

TYPEINFO() [5/6]

madness::TYPEINFO	(	4	,
		float_complex	,
		true	,
		true	,
		float	,
		float
	)

TYPEINFO() [6/6]

madness::TYPEINFO	(	5	,
		double_complex	,
		true	,
		true	,
		double	,
		double
	)

unary_op()

template<typename Q , typename opT , std::size_t NDIM>

Function<typename opT::resultT, NDIM> madness::unary_op	(	const Function< Q, NDIM > &	func,
		const opT &	op,
		bool	fence = true
	)

Out of place application of unary operation to function values with optional fence.

References func(), madness::Function< T, NDIM >::get_impl(), op(), madness::Function< T, NDIM >::set_impl(), and VERIFY_TREE.

Referenced by abs(), abs_square(), abssq(), madness::XCOperator< T, NDIM >::prep_xc_args(), test_hf_he(), and test_math().

unary_op_coeffs()

template<typename Q , typename opT , std::size_t NDIM>

Function<typename opT::resultT, NDIM> madness::unary_op_coeffs	(	const Function< Q, NDIM > &	func,
		const opT &	op,
		bool	fence = true
	)

Out of place application of unary operation to scaling function coefficients with optional fence.

References func(), op(), and madness::Function< T, NDIM >::unary_op_coeffs().

Referenced by abs(), function_real2complex(), function_real2complex(), imag(), and real().

unique_fileid()

std::string madness::unique_fileid

(

)

creates a unique filename, using PBS ID if available

References RandomValue< int >().

Referenced by test_Kcommutator(), and test_lowrank_function().

unitfunctor()

template<std::size_t NDIM>

static double madness::unitfunctor ( const Vector< double, NDIM > &  x )

static

Referenced by madness::smooth< T, NDIM >::make_inv_mask().

unitvec()

template<typename T , std::size_t N>

Vector<T,N> madness::unitvec	(	const Vector< T, N > &	r,
		const double	eps = 1.e-6
	)

Construct a unit-Vector that has the same direction as r.

Template Parameters

T	The type of data stored in the Vector.
N	The size of the Vector.

Parameters

[in]	r	The Vector.
[in]	eps	A precision. If the norm of r is less than eps, the zero vector is returned.

Returns

The desired unit-Vector (unless r is numerically the zero Vector).

References madness::detail::norm(), and madness::Vector< T, N >::normf().

Referenced by madness::NuclearCorrelationFactor::U1_dot_U1_functor::operator()().

user_to_sim()

template<std::size_t NDIM>

static void madness::user_to_sim ( const Vector< double, NDIM > &  xuser, Vector< double, NDIM > &  xsim  )

inlinestatic

Convert user coords (cell[][]) to simulation coords ([0,1]^ndim)

References madness::FunctionDefaults< NDIM >::get_rcell_width(), and NDIM.

Referenced by madness::Specialbox_op< T, NDIM >::check_special_points(), madness::Function< T, NDIM >::eval(), madness::Function< T, NDIM >::eval_cube(), madness::Function< T, NDIM >::eval_local_only(), madness::Function< T, NDIM >::evaldepthpt(), madness::Function< T, NDIM >::evalR(), mask3(), mask3(), mask3d(), madness::NuclearCuspyBox_op< T, NDIM >::operator()(), and madness::FunctionImpl< T, NDIM >::project_refine_op().

vec()

template<typename T , typename... Ts>

Vector<T, sizeof...(Ts) + 1> madness::vec ( T  t, Ts...  ts  )

inline

Factory function for creating a madness::Vector.

Variadic templates are used to create factories that mimic

inline madness::Vector<T, N> vec(T t1, ..., T tN) {
    std::Vector<T, N> ret;
    ret[0] = t1;
    ...
    ret[N-1] = tN;
    return ret;
}

This function counts the number of arguments passed in through the argument pack, creates a std::array of the appropriate size, forwards the arguments to the std::array's constructor, and passes the std::array to madness::Vector.

Deprecated:

This function has been replaced by the list-initialization constructor and assignment operator. Rather than

Vector<double, 3> v = vec(1.4, 2.5, 4.0);

use

Vector<double, 3> v{ 1.4, 2.5, 4.0 };

or

Vector<double, 3> v = { 1.4, 2.5, 4.0 };

Note

The first argument is separated from the pack to prevent 0-size arrays and also so that the caller doesn't have to explicitly specify T. It is assumed that all arguments are of type T or are convertible to type T.

Template Parameters

T	The data type for the array.
Ts	The argument pack; that is, the list of arguments. The size of the resulting Vector is directly determined from the size of the argument pack.

Parameters

[in]	t	The first argument.
[in]	ts	The rest of the arguments.

Returns

The Vector with the arguments put into it.

References T().

Referenced by A(), A2(), KPeriodicBSHOperator::apply(), apply_periodic_bsh(), madness::TaskFn< fnT, arg1T, arg2T, arg3T, arg4T, arg5T, arg6T, arg7T, arg8T, arg9T >::check_dependency(), ConstantSphere::check_pts(), InhomoConstantSphere::check_pts(), CosineSphere::check_pts(), Y20Sphere::check_pts(), madness::Localizer::determine_frozen_orbitals(), Ebar(), main(), madness::FunctionSpace< T, NDIM >::norm(), madness::VectorOfFunctionsSpace< T, VDIM, FDIM >::norm(), madness::VectorSpace< T, NDIM >::norm(), madness::SRConf< T >::normf(), Pbar(), PbarA(), madness::FunctionSpace< T, NDIM >::scale(), madness::VectorOfFunctionsSpace< T, VDIM, FDIM >::scale(), madness::VectorSpace< T, NDIM >::scale(), madness::CC_vecfunction::serialize(), Tbar(), madness::FunctionImpl< T, NDIM >::tnorm(), and to_response_vector().

vector_factory() [1/8]

template<typename T >

std::vector<T> madness::vector_factory ( const T &  v0 )

inline

Returns a std::vector<T> initialized from the arguments.

References v.

Referenced by madness::guessfactory::PolynomialFunctor::read_string().

vector_factory() [2/8]

template<typename T >

std::vector<T> madness::vector_factory ( const T &  v0, const T &  v1  )

inline

Returns a std::vector<T> initialized from the arguments.

References v.

vector_factory() [3/8]

template<typename T >

std::vector<T> madness::vector_factory ( const T &  v0, const T &  v1, const T &  v2  )

inline

Returns a std::vector<T> initialized from the arguments.

References v.

vector_factory() [4/8]

template<typename T >

std::vector<T> madness::vector_factory ( const T &  v0, const T &  v1, const T &  v2, const T &  v3  )

inline

Returns a std::vector<T> initialized from the arguments.

References v.

vector_factory() [5/8]

template<typename T >

std::vector<T> madness::vector_factory ( const T &  v0, const T &  v1, const T &  v2, const T &  v3, const T &  v4  )

inline

Returns a std::vector<T> initialized from the arguments.

References v.

vector_factory() [6/8]

template<typename T >

std::vector<T> madness::vector_factory ( const T &  v0, const T &  v1, const T &  v2, const T &  v3, const T &  v4, const T &  v5  )

inline

Returns a std::vector<T> initialized from the arguments.

References v.

vector_factory() [7/8]

template<typename T >

std::vector<T> madness::vector_factory ( const T &  v0, const T &  v1, const T &  v2, const T &  v3, const T &  v4, const T &  v5, const T &  v6  )

inline

Returns a std::vector<T> initialized from the arguments.

References v.

vector_factory() [8/8]

template<typename T >

std::vector<T> madness::vector_factory ( const T &  v0, const T &  v1, const T &  v2, const T &  v3, const T &  v4, const T &  v5, const T &  v6, const T &  v7  )

inline

Returns a std::vector<T> initialized from the arguments.

References v.

verify_tree()

template<typename T , std::size_t NDIM>

static void madness::verify_tree ( World &  world, const std::vector< Function< T, NDIM > > &  v  )

static

References v.

Referenced by refine_to_common_level().

vmulXX()

template<typename L , typename R , std::size_t D>

std::vector< Function<TENSOR_RESULT_TYPE(L,R),D> > madness::vmulXX	(	const Function< L, D > &	left,
		const std::vector< Function< R, D > > &	vright,
		double	tol,
		bool	fence = true
	)

Use the vmra/mul(...) interface instead.

This so that we don't have to have friend functions in a different header.

If using sparsity (tol != 0) you must have created the tree of norms already for both left and right.

References L, R, and TENSOR_RESULT_TYPE().

Referenced by matrix_mul_sparse(), mul(), and mul_sparse().

wall_time()

double madness::wall_time

(

)

Returns the wall time in seconds relative to an arbitrary origin.

As accurate and lightweight as we can get it, but may not be any better than the gettime of day system call.

Returns

The wall time (in seconds).

References e(), first_call, and initialized().

Referenced by madness::Znemo::timer::timer(), madness::Cloud::cloudtimer::~cloudtimer(), madness::SRConf< T >::add_SVD(), apply(), chin_chen(), madness::WorldProfile::clear(), madness::Nemo::compute_all_cphf(), compute_energy(), madness::SVDTensor< T >::compute_randomized_svd(), converge(), converge2s(), cpu_frequency(), cycle_count(), doit(), doplot(), doplotptk(), madness::Znemo::timer::end(), molresponse::end_timer(), DF::end_timer(), END_TIMER(), madness::Solver< T, NDIM >::END_TIMER(), END_TIMER(), madness::MP2::END_TIMER(), GygiPot::ESP(), madness::FunctionImpl< T, NDIM >::finalize_apply(), DF::get_times(), madness::Nemo::hessian(), madness::MP2::increment(), madness::SCFProtocol::initialize(), madness::timer::interrupt(), madness::Znemo::iterate(), madness::OEP::iterate(), iterate(), madness::Zcis::iterate(), madness::CC2::iterate_lrcc2_pairs(), madness::PNO::iterate_pairs_internal(), main(), madness::Solver< T, NDIM >::make_nuclear_charge_density_impl(), MPI_Wtime(), ortho3(), ortho5(), madness::WorldProfile::print(), madness::FunctionImpl< T, NDIM >::print_size(), madness::CCPairFunction< T, NDIM >::print_size(), print_stats(), print_stats(), propagate(), madness::timer::resume(), madness::MacroTask< taskT >::MacroTaskInternal::run(), madness::MacroTaskQ::run_all(), madness::CC2::solve(), SVPESolver::solve(), madness::Nemo::solve(), madness::SCF::solve(), solve(), madness::CC2::solve_cc2(), madness::MP2::solve_coupled_equations(), madness::CC2::solve_mp2_coupled(), madness::MP2::solve_residual_equations(), madness::CCTimer::start(), madness::MyTimer::start(), madness::profiling::TaskEvent::start(), molresponse::start_timer(), DF::start_timer(), START_TIMER(), madness::Solver< T, NDIM >::START_TIMER(), START_TIMER(), madness::MP2::START_TIMER(), madness::CCTimer::stop(), madness::MyTimer::stop(), madness::profiling::TaskEvent::stop(), madness::archive::ArchiveStoreImpl< ParallelOutputArchive< VectorOutputArchive >, WorldContainer< keyT, valueT > >::store(), madness::PoolTaskInterface::submit(), madness::Znemo::timer::tag(), test(), madness::TDHF::test(), test2(), test_adaptive_tree(), test_florian(), test_modified(), test_stuff(), madness::PNO::update_pno(), and madness::CCTimer::update_time().

world_mem_info()

WorldMemInfo* madness::world_mem_info

(

)

Returns pointer to internal structure.

References stats.

Referenced by print_stats().

write_molecules_to_file()

void madness::write_molecules_to_file	(	const Molecule &	molecule,
		const std::string &	geo_file
	)

References atomic_number_to_symbol(), f, madness::Molecule::get_all_coords_vec(), madness::Molecule::get_atomic_number(), molecule, and madness::Molecule::natom().

Referenced by do_response_orbital_vtk_plots().

x_rks_s__()

int madness::x_rks_s__	(	const double *	r__,
		double *	f,
		double *	dfdra
	)

References c_b2, f, and pow().

Referenced by da_ldaop(), madness::XCfunctional::exc(), madness::xc_lda_potential::operator()(), test_xc1(), and madness::XCfunctional::vxc().

x_uks_s__()

int madness::x_uks_s__	(	double *	ra,
		double *	rb,
		double *	f,
		double *	dfdra,
		double *	dfdrb
	)

References c_b2, f, and pow().

Referenced by madness::XCfunctional::exc(), and madness::XCfunctional::vxc().

xf()

static double madness::xf ( const coord_3d &  x )

static

Referenced by madness::XCfunctional::exc(), and madness::XCfunctional::vxc().

xterm_debug()

void madness::xterm_debug	(	const char *	path,
		const char *	display
	)

Todo:

Brief description needed.

Todo:

Detailed description needed.

Parameters

path	Description.
display	Description.

Referenced by madness::World::args(), and startup().

xterm_debug_breakpoint()

void madness::xterm_debug_breakpoint

(

)

zero_functions() [1/2]

template<typename T , std::size_t NDIM>

std::vector< Function<T,NDIM> > madness::zero_functions	(	World &	world,
		int	n
	)

Generates a vector of zero functions.

References PROFILE_BLOCK.

zero_functions() [2/2]

template<typename T , std::size_t NDIM>

std::vector< Function<T,NDIM> > madness::zero_functions	(	World &	world,
		int	n,
		bool	fence = true
	)

Generates a vector of zero functions (reconstructed)

References madness::WorldGopInterface::fence(), madness::World::gop, and PROFILE_BLOCK.

Referenced by ground_exchange(), ground_exchange_multiworld(), molresponseExchange(), and response_exchange_multiworld().

zero_functions_compressed()

template<typename T , std::size_t NDIM>

std::vector< Function<T,NDIM> > madness::zero_functions_compressed	(	World &	world,
		int	n,
		bool	fence = true
	)

Generates a vector of zero functions (compressed)

References compressed, madness::WorldGopInterface::fence(), madness::World::gop, and PROFILE_BLOCK.

Variable Documentation

___

const std::vector<Slice> madness::___ = vector_factory(_,_,_,_,_,_)

static

Entire dimension.

Referenced by madness::FunctionImpl< T, NDIM >::binaryXXa(), concatenate_columns(), concatenate_rows(), madness::DistributedMatrix< T >::copy_from_replicated(), madness::DistributedMatrix< T >::copy_to_replicated(), dft_xc_lda_ene(), dft_xc_lda_V(), madness::DistributedMatrix< T >::extract_columns(), fcube(), laplacian(), madness::FunctionImpl< T, NDIM >::mulXXa(), madness::FunctionImpl< T, NDIM >::mulXXveca(), madness::FunctionImpl< T, NDIM >::do_mirror::operator()(), and madness::FunctionImpl< T, NDIM >::do_map_and_mirror::operator()().

_c

Tensor<double> madness::_c

static

Referenced by autoc().

_cread

Tensor<double> madness::_cread

static

Referenced by autoc(), load_coeffs(), and read_data().

acut1e_6

const double madness::acut1e_6 = 0.25

Referenced by PeriodicCoulombOp(), and PeriodicCoulombOpPtr().

atomic_data

const AtomicData madness::atomic_data[NUMBER_OF_ATOMS_IN_TABLE]

static

Atomic weights are taken from IUPAC 2005 (M. E. Wieser, “Atomic weights of the elements 2005 (IUPAC Technical Report),” Pure and Applied Chemistry, vol. 78, no. 11.) Negative masses refer to the longest-living isotope. Note that the masses refer to isotopic averaging, not to the specified isotope!

Referenced by atomic_number_to_symbol(), get_atomic_data(), get_atomic_data(), MolecularEntity::print(), symbol_to_atomic_number(), and symbol_to_atomic_number().

autocorr_filename

const char* madness::autocorr_filename = "autocorr"

static

Referenced by load_coeffs(), read_data(), and test_autoc().

binder

ThreadBinder madness::binder

Referenced by madness::TaskThreadEnv::TaskThreadEnv(), madness::RMI::RmiTask::run(), and madness::ThreadPool::thread_main().

c_b14

const double madness::c_b14 = 1.333333333333333333333333333333

Referenced by c_uks_vwn5__().

c_b2

const double madness::c_b2 = 0.333333333333333333333333333333333

Referenced by x_rks_s__(), and x_uks_s__().

c_b7

const double madness::c_b7 = 0.333333333333333333333333333333

Referenced by c_rks_vwn5__(), and c_uks_vwn5__().

cache

class madness::twoscale_cache_class madness::cache[kmax+1]

static

Referenced by madness::Cloud::do_load(), find_fuzzy(), madness::detail::DistCache< keyT >::get_cache_value(), load_coeffs(), read_twoscale(), madness::detail::DistCache< keyT >::set_cache_value(), and two_scale_coefficients().

cutoff_radius

double madness::cutoff_radius = 5.0

static

data_is_read

bool madness::data_is_read = false

static

Referenced by load_quadrature(), and read_data().

default_jdim

const long madness::default_jdim = 5551212

static

Referenced by madness::TensorIterator< T, Q, R >::TensorIterator().

default_random_generator

Random madness::default_random_generator

The default random number stream.

Referenced by madness::Localizer::localize_boys(), madness::Localizer::localize_new(), main(), RandomValue< double >(), RandomValue< float >(), RandomVector< double >(), RandomVector< double_complex >(), RandomVector< float >(), RandomVector< float_complex >(), test(), test_Kcommutator(), test_lowrank_function(), and test_math().

dir

const string madness::dir = "coredata/"

static

Referenced by GradBSHOperator(), GradBSHOperator_Joel(), GradCoulombOperator(), gradPbarA(), GradSlaterOperator(), load_coeffs(), load_quadrature(), make_grad_operator(), DPot::operator()(), and madness::CorePotentialManager::read_file().

DYNAMIC_TAG_BASE

const Tag madness::DYNAMIC_TAG_BASE = 1024

static

Todo:

Brief description needed.

f

const Function< T, NDIM > & madness::f

Initial value:

{
        return inner(f,g)

Referenced by madness::CubicInterpolationTable< T >::CubicInterpolationTable(), YetAnotherWrapperClass::YetAnotherWrapperClass(), abs(), abs_square(), DirichletCondIntOp::action(), madness::FutureImpl< T >::add_to_assignments(), madness::LoadBalanceDeux< NDIM >::add_tree(), madness::WorldObject< Derived >::am_arg(), madness::WorldTaskQueue::am_arg(), LProjector::analyze(), ExactSpinor::angular(), madness::FunctionImpl< T, NDIM >::apply(), apply(), apply_1d_realspace_push(), madness::FunctionImpl< T, NDIM >::apply_1d_realspace_push(), madness::Solver< T, NDIM >::apply_hf_exchange(), apply_mask(), apply_only(), apply_periodic_bsh(), madness::guessfactory::apply_polynomial_exop(), madness::FunctionImpl< T, NDIM >::apply_source_driven(), madness::SeparatedConvolution< Q, NDIM >::apply_transformation(), madness::SeparatedConvolution< Q, NDIM >::apply_transformation2(), madness::SeparatedConvolution< Q, NDIM >::apply_transformation3(), madness::guessfactory::apply_trigonometric_exop(), madness::MP2::asymmetry(), c_rks_vwn5__(), c_uks_vwn5__(), change_tree_state(), madness::Specialbox_op< T, NDIM >::check_special_points(), madness::guessfactory::compute_centroid(), madness::Localizer::compute_core_valence_separation_transformation_matrix(), compute_energy(), madness::max_of_x_1_smooth::compute_factor(), compute_fock_matrix(), madness::MP2::compute_gQf(), madness::MP2::compute_gQf_cc2interface(), conj(), convert(), copy(), cross(), madness::CubicInterpolationTable< T >::cubic_fit(), madness::smooth< T, NDIM >::cut_oscillations(), madness::MP2::debug_cc2(), madness::FunctionSpace< T, NDIM >::destroy(), madness::VectorOfFunctionsSpace< T, VDIM, FDIM >::destroy(), madness::FunctionImpl< T, NDIM >::diff(), diff(), madness::Function< T, NDIM >::dirac_convolution(), madness::CCPairFunction< T, NDIM >::dirac_convolution_decomposed(), madness::FunctionImpl< T, NDIM >::dirac_convolution_op(), madness::FunctionImpl< T, NDIM >::do_diff1(), madness::DerivativeBase< T, NDIM >::do_diff1(), madness::FunctionImpl< T, NDIM >::do_dirac_convolution(), do_response_orbital_vtk_plots(), Plotter::dolineplot(), Plotter::doplot1(), Plotter::dovolumeplot(), dxprintvalue(), madness::CubicInterpolationTable< T >::err(), errsq(), madness::XCfunctional::exc(), expL(), fcube(), madness::FunctionImpl< T, NDIM >::fcube(), madness::DistributedMatrix< T >::fill(), madness::WorldContainerImpl< keyT, valueT, hashfunT >::find_failure_handler(), madness::DerivativeBase< T, NDIM >::find_neighbor(), madness::WorldContainerImpl< keyT, valueT, hashfunT >::find_success_handler(), madness::FunctionImpl< T, NDIM >::forward_do_diff1(), madness::DerivativeBase< T, NDIM >::forward_do_diff1(), madness::smooth< T, NDIM >::gaussian_smoothing(), madness::Function< T, NDIM >::gaxpy_ext(), madness::FunctionImpl< T, NDIM >::gaxpy_ext(), madness::FunctionImpl< T, NDIM >::gaxpy_ext_node(), madness::FunctionImpl< T, NDIM >::gaxpy_ext_recursive(), madness::FunctionImpl< T, NDIM >::gaxpy_oop_reconstructed(), madness::TaskFn< fnT, arg1T, arg2T, arg3T, arg4T, arg5T, arg6T, arg7T, arg8T, arg9T >::get_func(), get_impl(), madness::MP2::get_residue(), get_size(), madness::Projector< T, NDIM >::get_vectors_for_outer_product(), madness::StrongOrthogonalityProjector< T, NDIM >::get_vectors_for_outer_product(), grad(), grad_ble_one(), grad_ble_two(), grad_bpsline_two(), grad_bspline_one(), grad_bspline_three(), madness::Solver< T, NDIM >::gram_schmidt(), madness::PNO::guess_virtuals(), madness::BasisFunctions::guess_with_exop(), madness::CC_vecfunction::hash(), madness::Znemo::hcore_guess(), inner(), madness::Function< T, NDIM >::inner_adaptive(), madness::FunctionImpl< T, NDIM >::inner_adaptive_local(), madness::FunctionImpl< T, NDIM >::inner_adaptive_recursive(), madness::Function< T, NDIM >::inner_ext(), madness::FunctionImpl< T, NDIM >::inner_ext_local(), madness::Function< T, NDIM >::inner_ext_local(), madness::FunctionImpl< T, NDIM >::inner_ext_node(), madness::FunctionImpl< T, NDIM >::inner_ext_recursive(), innerXX(), madness::CC_vecfunction::insert(), madness::CCIntermediatePotentials::insert(), madness::MP2::iterate(), madness::Zcis::iterate(), iterate(), laplacian(), line_plot(), madness::archive::ArchiveLoadImpl< Archive, Future< T >, std::enable_if_t<!std::is_void_v< T > > >::load(), madness::archive::ArchiveLoadImpl< Archive, std::shared_ptr< const FunctionImpl< T, NDIM > > >::load(), madness::archive::ArchiveLoadImpl< Archive, std::shared_ptr< FunctionImpl< T, NDIM > > >::load(), madness::archive::ArchiveLoadImpl< ParallelInputArchive< archiveT >, CCPairFunction< T, NDIM > >::load(), madness::archive::ArchiveLoadImpl< ParallelInputArchive< archiveT >, Function< T, NDIM > >::load(), load(), load(), load_balance(), madness::LoadBalanceDeux< NDIM >::load_balance(), EmbeddedDirichlet::load_balance(), madness::MP2::load_function(), madness::Nemo::load_function(), load_function(), main(), madness::smooth< T, NDIM >::make_explog(), madness::smooth< T, NDIM >::make_plots(), madness::Nemo::make_plots(), madness::Function< T, NDIM >::map_and_mirror(), map_and_mirror(), madness::FunctionImpl< T, NDIM >::map_and_mirror(), map_tensor(), madness::Function< T, NDIM >::mapdim(), mapdim(), madness::FunctionImpl< T, NDIM >::mapdim(), matrix_inner(), matrix_inner_old(), matrix_mul_sparse(), madness::smooth< T, NDIM >::merge_functions(), madness::Function< T, NDIM >::mirror(), mirror(), madness::FunctionImpl< T, NDIM >::mirror(), mul(), madness::Function< T, NDIM >::mul_on_demand(), multiply(), madness::FunctionImpl< T, NDIM >::multiply(), madness::SeparatedConvolution< Q, NDIM >::muopxv_fast(), madness::SeparatedConvolution< Q, NDIM >::muopxv_fast2(), N(), madness::ContractedGaussianShell::normalize(), op(), madness::CCIntermediatePotentials::operator()(), LProjector::operator()(), F::operator()(), FunctorInterfaceWrapper::operator()(), madness::StrongOrthogonalityProjector< T, NDIM >::operator()(), madness::QProjector< T, NDIM >::operator()(), madness::SeparatedConvolution< Q, NDIM >::operator()(), madness::CCConvolutionOperator< T, NDIM >::operator()(), madness::pg_operator::operator()(), madness::DerivativeBase< T, NDIM >::operator()(), madness::munging_operator::operator()(), madness::xc_lda_potential::operator()(), YetAnotherWrapperClass::operator()(), madness::ElectronCuspyBox_op< T, NDIM >::operator()(), madness::NuclearCuspyBox_op< T, NDIM >::operator()(), madness::merging_operator::operator()(), madness::Projector< T, NDIM >::operator()(), madness::GenericConvolution1D< Q, opT >::Shmoo::operator()(), Fred::operator*(), madness::response_space::operator*(), operator*(), operator+(), Fred::operator+=(), operator-(), operator<<(), F::operator=(), Fred::operator=(), madness::Function< T, NDIM >::operator=(), madness::LowRankFunction< T, NDIM, LDIM >::operator=(), MySteepestDescent::optimize(), SteepestDescent::optimize(), QuasiNewton::optimize(), optimize_coeffs(), madness::TDHF::oscillator_strength_length(), madness::TDHF::oscillator_strength_velocity(), madness::FunctionImpl< T, NDIM >::parent_to_child_NS(), partial_mul(), madness::XCfunctional::plot(), plot(), madness::CC2::plot(), plot_along(), plot_cubefile(), plot_line(), plot_line_print_value(), Calculation::plot_p(), plot_plane(), plot_symmetry_operators(), Calculation::plot_z(), plotdx(), plotpovray(), plotter1(), plotter2(), plotter3(), plotvtk_begin(), plotvtk_data(), plotvtk_end(), madness::DQueue< T >::pop_front(), position_stream(), madness::Molecule::position_stream_in_library(), position_stream_to_word(), madness::trajectory< NDIM >::print_psdot(), print_tree_jsonfile(), madness::TDHF::print_xfunctions(), printfunc(), madness::CCPairFunction< T, NDIM >::project_out(), madness::FunctionImpl< T, NDIM >::project_out2(), madness::CCPairFunction< T, NDIM >::project_out_decomposed(), madness::CCPairFunction< T, NDIM >::project_out_op_decomposed(), ExactSpinor::psivalue(), madness::response_space::push_back(), madness::DQueue< T >::push_front_with_lock(), InputParameters::read(), madness::DFParameters::read(), madness::Molecule::read(), madness::BasisFunctions::read_basis_from_file(), madness::BasisFunctions::read_contracted_basis_from_file(), read_data(), madness::DFParameters::read_file(), madness::ElectronicStructureParams::read_file(), madness::Molecule::read_file(), MolecularEntity::read_file(), CalculationParameters::read_file(), madness::Derivative< T, NDIM >::read_from_file(), madness::QCCalculationParametersBase::read_input(), madness::QCCalculationParametersBase::read_internal(), madness::Molecule::read_structure_from_library(), madness::Molecule::read_xyz(), refine(), residual(), save(), save(), madness::MP2::save_function(), save_function(), madness::Nemo::save_function(), madness::FunctionImpl< T, NDIM >::scale_oop(), madness::DQueue< T >::scan(), madness::detail::DistCache< keyT >::set_cache_value(), madness::Molecule::GeometryParameters::set_derived_values(), madness::Function< T, NDIM >::set_impl(), Calculation::set_protocol(), madness::SCF::set_protocol(), madness::ConditionVariable::signal(), madness::Nemo::smoothen(), madness::SCF::solve(), square(), madness::archive::ArchiveStoreImpl< Archive, Future< T >, std::enable_if_t<!std::is_void_v< T > > >::store(), madness::archive::ArchiveStoreImpl< ParallelOutputArchive< archiveT >, CCPairFunction< T, NDIM > >::store(), madness::archive::ArchiveStoreImpl< ParallelOutputArchive< archiveT >, Function< T, NDIM > >::store(), sum(), swap_particles(), symmetrize(), madness::TDHF::symmetrize(), tabulate(), TENSOR_RESULT_TYPE(), madness::Random::test(), test(), Test5(), Test6(), test6(), Test6a(), madness::smooth< T, NDIM >::test_1d(), test_add(), test_apply(), test_apply_push_1d(), test_basic(), test_bsh(), test_constructor(), test_conv(), test_conversion(), test_coulomb(), test_cross(), test_diff(), test_exchange(), test_fock(), test_gconv(), test_inner(), test_integration(), test_io(), test_kinetic(), madness::Znemo::test_landau_wave_function(), test_math(), test_matrix_mul_sparse(), test_multi_to_multi_op(), test_multiply(), test_op(), test_opdir(), test_orthogonalization(), test_partial_inner_3d(), test_partial_inner_6d(), test_per(), test_periodic(), test_periodic1(), test_periodic2(), test_periodic_bsh(), madness::Solver< T, NDIM >::test_periodicity(), test_plot(), test_proj(), test_projector(), test_Q12_projector(), test_qm(), test_rot(), test_scalar_multiplication(), test_swap_particles(), test_transform(), test_unaryop(), test_xc2(), test_xcfunctional(), testNavierStokes(), transpose(), madness::Function< T, NDIM >::unaryop(), madness::MutexFair::unlock(), MySteepestDescent::value(), SteepestDescent::value(), QuasiNewton::value(), Fred::value_and_gradient(), madness::XCfunctional::vxc(), write_molecules_to_file(), x_rks_s__(), and x_uks_s__().

filename

const char* madness::filename = "gaussleg"

static

Referenced by AtomicBasisSet::AtomicBasisSet(), madness::AtomicBasisSet::AtomicBasisSet(), madness::archive::BinaryFstreamInputArchive::BinaryFstreamInputArchive(), madness::archive::BinaryFstreamOutputArchive::BinaryFstreamOutputArchive(), madness::CorePotentialManager::CorePotentialManager(), inputfile::inputfile(), madness::MacroTask< taskT >::io_redirect::io_redirect(), MolecularEntity::MolecularEntity(), madness::archive::ParallelInputArchive< localarchiveT >::ParallelInputArchive(), madness::archive::ParallelOutputArchive< localarchiveT >::ParallelOutputArchive(), madness::Solver< T, NDIM >::Solver(), madness::archive::TextFstreamInputArchive::TextFstreamInputArchive(), madness::archive::TextFstreamOutputArchive::TextFstreamOutputArchive(), checksum_file(), cubefile_header(), madness::FunctionImpl< T, NDIM >::do_print_grid(), madness::FunctionImpl< T, NDIM >::do_print_plane(), do_response_density_vtk_plots(), do_response_orbital_vtk_plots(), do_vtk_plots(), draw_circle(), draw_line(), madness::archive::BaseParallelArchive< Archive >::exists(), madness::QCCalculationParametersBase::file_exists(), get_charge_from_file(), madness::Solver< T, NDIM >::init(), OutputWriter::init_debug(), OutputWriter::init_eigv(), OutputWriter::init_log(), load(), Calculation::load_mos(), madness::GTHPseudopotential< Q >::load_pseudo_from_file(), load_quadrature(), madness::CC_vecfunction::load_restartdata(), main(), DF::make_density_lineplots(), madness::archive::BinaryFstreamInputArchive::open(), madness::archive::BinaryFstreamOutputArchive::open(), madness::archive::TextFstreamInputArchive::open(), madness::archive::TextFstreamOutputArchive::open(), madness::archive::BaseParallelArchive< Archive >::open(), plot(), Spinor::plot(), plot_along(), plot_cubefile(), plot_line(), Calculation::plot_p(), plot_plane(), Calculation::plot_z(), plotdx(), plotpovray(), plotvtk(), plotvtk_begin(), plotvtk_data(), plotvtk_end(), madness::MolecularOrbitals< T, NDIM >::print_cubefiles(), madness::FunctionImpl< T, NDIM >::print_grid(), print_meminfo(), print_meminfo_ostream(), madness::FunctionImpl< T, NDIM >::print_plane(), print_tree_jsonfile(), InputParameters::read(), madness::InitParameters::read(), madness::BasisFunctions::read_basis_from_file(), madness::F12Potentials::read_cabs_from_file(), madness::BasisFunctions::read_contracted_basis_from_file(), madness::Molecule::read_core_file(), read_data(), madness::Znemo::read_explicit_guess_functions(), madness::DFParameters::read_file(), madness::ElectronicStructureParams::read_file(), madness::Molecule::read_file(), MolecularEntity::read_file(), CalculationParameters::read_file(), AtomicBasisSet::read_file(), madness::AtomicBasisSet::read_file(), madness::CorePotentialManager::read_file(), madness::Derivative< T, NDIM >::read_from_file(), madness::QCCalculationParametersBase::read_input(), madness::AtomicBasisSet::read_nw_file(), madness::MolecularOrbitals< T, NDIM >::read_restartdata(), madness::Molecule::read_xyz(), madness::InitParameters::readnw(), redirectio(), madness::archive::BaseParallelArchive< Archive >::remove(), madness::commandlineparser::remove_extension(), save(), madness::MolecularOrbitals< T, NDIM >::save_restartdata(), madness::CC_vecfunction::save_restartdata(), madness::Derivative< T, NDIM >::set_ble1(), madness::Derivative< T, NDIM >::set_ble2(), madness::Derivative< T, NDIM >::set_bspline1(), madness::Derivative< T, NDIM >::set_bspline2(), madness::Derivative< T, NDIM >::set_bspline3(), solve(), madness::TDHF::solve_cis(), test_adaptive_tree(), TEST_CASE(), test_smooth_maxout(), testNavierStokes(), madness::gridbase::visualize(), and write_test_input().

g

NDIM const opT & madness::g

Initial value:

{
        PROFILE_FUNC

Referenced by ExactSpinor::angular(), apply_bsh(), apply_periodic_bsh(), compute_energy(), madness::MP2::compute_gQf(), madness::MP3::compute_mp3_ghij(), madness::MP3::compute_mp3_ghij_fast(), cross(), madness::Znemo::custom_guess(), madness::FunctionImpl< T, NDIM >::dirac_convolution_op(), Plotter::dolineplot(), Plotter::dovolumeplot(), madness::TwoElectronFactory< T, NDIM >::gamma(), madness::FunctionImpl< T, NDIM >::gaxpy_inplace_reconstructed(), madness::FunctionImpl< T, NDIM >::gaxpy_oop_reconstructed(), madness::SDFCircle::grad_sdf(), madness::SDFSphere::grad_sdf(), Fred::gradient(), Test2::gradient(), CoreFittingTarget::gradient(), data< T, NDIM >::initialize(), inner(), innerXX(), madness::Localizer::localize_boys(), madness::Localizer::localize_new(), main(), Fred::make_g(), matrix_inner(), matrix_inner_old(), matrix_mul_sparse(), multiply(), madness::FunctionImpl< T, NDIM >::multiply(), QuasiNewton::new_search_direction(), madness::QuasiNewton::new_search_direction(), madness::MolecularOptimizer::new_search_direction2(), BoysLocalization::operator()(), madness::response_space::operator+=(), MySteepestDescent::optimize(), SteepestDescent::optimize(), QuasiNewton::optimize(), madness::SteepestDescent::optimize(), madness::QuasiNewton::optimize(), madness::FunctionImpl< T, NDIM >::partial_inner(), madness::FunctionImpl< T, NDIM >::partial_inner_contract(), partial_mul(), plot_line(), madness::LowRankFunctionFactory< T, NDIM, LDIM >::project(), madness::FunctionImpl< T, NDIM >::project_out2(), ExactSpinor::psivalue(), madness::AtomicBasisSet::read_file(), madness::Zcis::read_guess(), madness::AtomicBasisSet::read_nw_file(), madness::Zcis::save_guess(), madness::GaussSlater::Spp_div_S(), madness::GradientalGaussSlater::Spp_div_S(), madness::GradientalGaussSlater::Sr_div_S(), madness::GradientalGaussSlater::Srr_div_S(), madness::GradientalGaussSlater::Srrr_div_S(), TENSOR_RESULT_TYPE(), madness::Gnuplot::test(), test(), Test6(), test_coulomb(), test_gconv(), test_io(), test_rnlp(), test_U_el(), test_unaryop(), testgradG(), transpose(), and Fred::value_and_gradient().

has_freestanding_default_serialize_v

template<typename T , typename Archive >

constexpr bool madness::has_freestanding_default_serialize_v = madness::meta::is_detected_v<madness::has_freestanding_default_serialize_t,T,Archive>

inlineconstexpr

true if this is well-formed:

// T t; Archive ar;
default_serialize(ar, t);

Referenced by madness::archive::ArchiveLoadImpl< Archive, T, Enabler >::load(), and madness::archive::ArchiveStoreImpl< Archive, T, Enabler >::store().

has_freestanding_default_serialize_with_size_v

template<typename T , typename Archive >

constexpr bool madness::has_freestanding_default_serialize_with_size_v = madness::meta::is_detected_v<madness::has_freestanding_default_serialize_with_size_t,T,Archive>

inlineconstexpr

true if this is well-formed:

// T t; Archive ar;
default_serialize(ar, &t, 1u);

Referenced by madness::archive::ArchiveImpl< Archive, archive_array< T > >::wrap_load(), and madness::archive::ArchiveImpl< Archive, archive_array< T > >::wrap_store().

has_freestanding_serialize_v

template<typename T , typename Archive >

constexpr bool madness::has_freestanding_serialize_v = madness::meta::is_detected_v<madness::has_freestanding_serialize_t,T,Archive>

inlineconstexpr

true if this is well-formed:

// T t; Archive ar;
serialize(ar, t);

Referenced by madness::archive::ArchiveLoadImpl< Archive, T, Enabler >::load(), and madness::archive::ArchiveStoreImpl< Archive, T, Enabler >::store().

has_freestanding_serialize_with_size_v

template<typename T , typename Archive >

constexpr bool madness::has_freestanding_serialize_with_size_v = madness::meta::is_detected_v<madness::has_freestanding_serialize_with_size_t,T,Archive>

inlineconstexpr

true if this is well-formed:

// T t; Archive ar;
serialize(ar, &t, 1u);

Referenced by madness::archive::ArchiveImpl< Archive, archive_array< T > >::wrap_load(), and madness::archive::ArchiveImpl< Archive, archive_array< T > >::wrap_store().

has_freestanding_serialize_with_version_v

template<typename T , typename Archive >

constexpr bool madness::has_freestanding_serialize_with_version_v = madness::meta::is_detected_v<madness::has_freestanding_serialize_with_version_t,T,Archive>

inlineconstexpr

true if this is well-formed:

// T t; Archive ar;
serialize(ar, t, 0u);

has_member_serialize_v

template<typename T , typename Archive >

constexpr bool madness::has_member_serialize_v = madness::meta::is_detected_v<madness::has_member_serialize_t,T,Archive>

inlineconstexpr

true if this is well-formed:

// T t; Archive ar;
t.serialize(ar);

has_member_serialize_with_version_v

template<typename T , typename Archive >

constexpr bool madness::has_member_serialize_with_version_v = madness::meta::is_detected_v<madness::has_member_serialize_with_version_t,T,Archive>

inlineconstexpr

true if this is well-formed:

// T t; Archive ar;
t.serialize(ar, 0u);

has_nonmember_load_and_store_v

template<typename T , typename Archive >

constexpr bool madness::has_nonmember_load_and_store_v = has_nonmember_load_v<T, Archive> && has_nonmember_store_v<T, Archive>

inlineconstexpr

has_nonmember_load_v

template<typename T , typename Archive >

constexpr bool madness::has_nonmember_load_v = madness::meta::is_detected_v<madness::has_nonmember_load_t,T,Archive>

inlineconstexpr

true if this is well-formed:

// T t; Archive ar;
madness::archive::ArchiveLoadImpl<Archive, T>::load(ar, t);

has_nonmember_serialize_v

template<typename T , typename Archive >

constexpr bool madness::has_nonmember_serialize_v = madness::meta::is_detected_v<madness::has_nonmember_serialize_t,T,Archive>

inlineconstexpr

true if this is well-formed:

// T t; Archive ar;
madness::archive::ArchiveSerializeImpl<Archive, T>::serialize(ar, t);

has_nonmember_store_v

template<typename T , typename Archive >

constexpr bool madness::has_nonmember_store_v = madness::meta::is_detected_v<madness::has_nonmember_store_t,T,Archive>

inlineconstexpr

true if this is well-formed:

// T t; Archive ar;
madness::archive::ArchiveStoreImpl<Archive, T>::store(ar, t);

has_nonmember_wrap_load_and_store_v

template<typename T , typename Archive >

constexpr bool madness::has_nonmember_wrap_load_and_store_v = has_nonmember_wrap_load_v<T, Archive> && has_nonmember_wrap_store_v<T, Archive>

inlineconstexpr

has_nonmember_wrap_load_v

template<typename T , typename Archive >

constexpr bool madness::has_nonmember_wrap_load_v = madness::meta::is_detected_v<madness::has_nonmember_wrap_load_t,T,Archive>

inlineconstexpr

true if this is well-formed:

// T t; Archive ar;
madness::archive::ArchiveImpl<Archive, T>::wrap_load(ar, t);

has_nonmember_wrap_store_v

template<typename T , typename Archive >

constexpr bool madness::has_nonmember_wrap_store_v = madness::meta::is_detected_v<madness::has_nonmember_wrap_store_t,T,Archive>

inlineconstexpr

true if this is well-formed:

// T t; Archive ar;
madness::archive::ArchiveImpl<Archive, T>::wrap_store(ar, t);

is_always_serializable

template<typename T >

constexpr bool madness::is_always_serializable

constexpr

Initial value:

=
    std::is_arithmetic<T>::value || 
    std::is_same<std::nullptr_t, typename std::remove_cv<T>::type>::value || 
    is_any_function_pointer_v<T> || 
    std::is_function<T>::value

is_any_function_pointer_v

template<typename T >

constexpr bool madness::is_any_function_pointer_v = is_any_function_pointer<T>::value

constexpr

is_archive_v

template<typename T >

constexpr bool madness::is_archive_v = meta::is_detected_v<is_archive_defined_t,T>

inlineconstexpr

is_default_serializable_v

template<typename Archive , typename T >

constexpr bool madness::is_default_serializable_v = is_default_serializable<Archive, T>::value

inlineconstexpr

Referenced by test_in().

is_default_serializable_v< Archive, const T >

template<typename Archive , typename T >

constexpr bool madness::is_default_serializable_v< Archive, const T > = is_default_serializable_v<Archive, T>

inlineconstexpr

is_function_pointer_v

template<typename T >

constexpr bool madness::is_function_pointer_v = is_function_pointer<T>::value

constexpr

is_input_archive_v

template<typename T >

constexpr bool madness::is_input_archive_v = meta::is_detected_v<is_input_archive_defined_t, T>

inlineconstexpr

is_iostreammable_v

template<typename T >

constexpr bool madness::is_iostreammable_v = is_istreammable_v<T> && is_ostreammable_v<T>

constexpr

providing automatic support for serializing to/from std streams requires bidirectional streammability

is_istreammable_v

template<typename T >

constexpr bool madness::is_istreammable_v = is_istreammable<T>::value

constexpr

Shortcut for is_istreammable<T>::value.

Referenced by test_in().

is_ostreammable_v

template<typename T >

constexpr bool madness::is_ostreammable_v = is_ostreammable<T>::value

constexpr

Shortcut for is_ostreammable<T>::value.

Referenced by test_in().

is_output_archive_v

template<typename T >

constexpr bool madness::is_output_archive_v = meta::is_detected_v<is_output_archive_defined_t, T>

inlineconstexpr

is_serializable_v

template<typename Archive , typename T >

constexpr bool madness::is_serializable_v

inlineconstexpr

Initial value:

= is_archive_v<Archive> && (is_default_serializable_v<Archive, T> ||
        is_user_serializable_v<Archive,T>)

Evaluates to true if can serialize an object of type T to an object of type Archive, using either user-provided methods or, if T is default-serializable to Archive, using default method for this Archive

Template Parameters

Archive
T

is_serializable_v< Archive, const T >

template<typename Archive , typename T >

constexpr bool madness::is_serializable_v< Archive, const T > = is_serializable_v<Archive, T>

inlineconstexpr

is_text_archive_v

template<typename Archive >

constexpr const bool madness::is_text_archive_v = is_text_archive<Archive>::value

constexpr

is_text_archive_v is a shorthand for is_text_archive<A>::value

Template Parameters

Archive

an archive type

is_trivially_serializable_v

template<typename T >

constexpr bool madness::is_trivially_serializable_v = is_trivially_serializable<T>::value

inlineconstexpr

is_user_serializable_v

template<typename Archive , typename T >

constexpr bool madness::is_user_serializable_v

inlineconstexpr

Initial value:

= is_archive_v<Archive> && (has_member_serialize_v<T, Archive> ||
                                                                    has_nonmember_serialize_v<T, Archive> ||
                                                                    ((has_nonmember_load_v<T, Archive> || has_nonmember_wrap_load_v<T, Archive>) && is_input_archive_v<Archive> && !has_freestanding_default_serialize_v<T, Archive>) ||
                                                                    ((has_nonmember_store_v<T, Archive> || has_nonmember_wrap_store_v<T, Archive>) && is_output_archive_v<Archive> && !has_freestanding_default_serialize_v<T, Archive>))

Evaluates to true if can serialize an object of type T to an object of type Archive using user-provided methods

Template Parameters

Archive
T

is_user_serializable_v< Archive, const T >

template<typename Archive , typename T >

constexpr bool madness::is_user_serializable_v< Archive, const T > = is_user_serializable_v<Archive, T>

inlineconstexpr

kcur

int madness::kcur = -1

static

Referenced by autoc().

kmax

const int madness::kmax = 60

static

Referenced by madness::BandlimitedPropagator::BandlimitedPropagator(), load_coeffs(), wstFunctor< Q >::operator()(), madness::FunctionImpl< T, NDIM >::do_mirror::operator()(), madness::FunctionImpl< T, NDIM >::do_map_and_mirror::operator()(), read_twoscale(), test_bsh(), test_conv(), test_two_scale_coefficients(), madness::TensorTrain< T >::truncate(), and two_scale_coefficients().

kmax_autoc

const int madness::kmax_autoc = 30

static

Referenced by load_coeffs().

kread

int madness::kread = -1

static

Referenced by autoc(), load_coeffs(), and read_data().

loaded

bool madness::loaded = 0

static

Referenced by load_coeffs(), read_twoscale(), and two_scale_coefficients().

mask_factor

double madness::mask_factor = 5.0

static

max_npt

const int madness::max_npt = 64

static

Referenced by gauss_legendre(), load_quadrature(), and read_data().

MAXK

const int madness::MAXK = 30

static

The maximum wavelet order presently supported.

Referenced by madness::FunctionImpl< T, NDIM >::FunctionImpl(), madness::FunctionNode< T, NDIM >::coeff(), madness::FunctionCommonData< T, NDIM >::get(), madness::FunctionNode< T, NDIM >::set_coeff(), and madness::FunctionDefaults< NDIM >::set_k().

MAXLEVEL

const int madness::MAXLEVEL = 8*sizeof(Translation)-2

static

The maximum depth of refinement possible.

Referenced by madness::FunctionDefaults< NDIM >::set_initial_level(), madness::FunctionDefaults< NDIM >::set_max_refine_level(), and madness::FunctionDefaults< NDIM >::set_special_level().

nn1

double madness::nn1[100]

static

Referenced by initialize_legendre_stuff(), and legendre_polynomials().

NUMBER_OF_ATOMS_IN_TABLE

const unsigned int madness::NUMBER_OF_ATOMS_IN_TABLE = 110

static

Referenced by get_atomic_data(), get_atomic_data(), symbol_to_atomic_number(), and symbol_to_atomic_number().

NUMEVENTS

const int madness::NUMEVENTS = 0

Referenced by print_stats().

phi_norms

double madness::phi_norms[100]

static

Referenced by initialize_legendre_stuff(), and legendre_scaling_functions().

points

Tensor<double> madness::points[max_npt+1]

static

Referenced by do_response_density_vtk_plots(), do_response_orbital_vtk_plots(), do_vtk_plots(), gauss_legendre(), load_quadrature(), read_data(), test_construction(), and test_integration().

print_timings

bool madness::print_timings = false

static

Referenced by madness::SCF::SCF(), apply(), END_TIMER(), madness::FunctionImpl< T, NDIM >::finalize_apply(), and madness::SCF::set_print_timings().

reduction_alg

std::string madness::reduction_alg ="divide_conquer"

static

Referenced by madness::SVDTensor< T >::reduction_algorithm(), and madness::SVDTensor< T >::set_reduction_algorithm().

rmi_task_is_running

std::atomic<bool> madness::rmi_task_is_running = false

static

Referenced by madness::RMI::begin(), and madness::RMI::RmiTask::set_rmi_task_is_running().

sss

std::vector<double> madness::sss

static

Referenced by DF::end_timer(), END_TIMER(), END_TIMER(), DF::get_times(), DF::start_timer(), START_TIMER(), and START_TIMER().

tensor_type_names

const char* madness::tensor_type_names[]

extern

Referenced by Test1(), Test3(), Test5(), Test6(), and Test7().

threadcounter

AtomicInt madness::threadcounter

static

Referenced by madness::WorldProfileObj::WorldProfileObj().

ttt

std::vector<double> madness::ttt

static

Referenced by madness::FunctionImpl< T, NDIM >::add_scalar_inplace(), DF::end_timer(), END_TIMER(), END_TIMER(), DF::get_times(), DF::start_timer(), START_TIMER(), START_TIMER(), and test5().

twoscale_filename

const char* madness::twoscale_filename = "coeffs"

static

Referenced by load_coeffs(), and read_twoscale().

weights

Tensor<double> madness::weights[max_npt+1]

static

Referenced by gauss_legendre(), initial_guess(), load_quadrature(), madness::FunctionImpl< T, NDIM >::project_out_op< LDIM >::operator()(), ortho3(), madness::SVDTensor< T >::orthonormalize(), outer(), read_data(), and test_integration().