MADNESS 0.10.1
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#include <madness/mra/mra.h>
#include <madness/tensor/solvers.h>
#include <madness/chem/molecule.h>
#include <madness/chem/molecularbasis.h>
#include <madness/chem/xcfunctional.h>
#include "subspace.h"
Classes | |
class | AtomicBasisFunctor< Q > |
class | AtomicOrbitalFunctor |
class | ExpFunctor< Q > |
class | ExpFunctor3d< Q > |
class | KPeriodicBSHOperator |
class | MolecularGuessDensityFunctor |
class | NuclearDensityFunctor |
class | SplitterFunctor |
Typedefs | |
typedef SeparatedConvolution< double_complex, 3 > | coperatorT |
typedef SeparatedConvolution< double, 3 > | operatorT |
typedef std::shared_ptr< coperatorT > | pcoperatorT |
typedef std::shared_ptr< operatorT> | poperatorT |
typedef std::pair< vector_complex_function_3d, vector_complex_function_3d > | vcpairT |
Variables | |
static AtomicBasisSet | aobasis |
static const double | kwavelet = 14 |
static const double | L = 10.6591 |
static const int | maxR = 3 |
static Molecule | molecule |
static double | sss |
static Subspace * | subspace |
static const double | thresh = 1e-5 |
static const int | truncate_mode = 0 |
static double | ttt |
static const double | twopi = 2.0*constants::pi |
typedef SeparatedConvolution<double_complex,3> coperatorT |
typedef SeparatedConvolution<double,3> operatorT |
typedef std::shared_ptr<coperatorT> pcoperatorT |
typedef std::shared_ptr<operatorT> poperatorT |
typedef std::pair<vector_complex_function_3d,vector_complex_function_3d> vcpairT |
complex_function_3d apply_periodic_bsh | ( | World & | world, |
const complex_function_3d & | f, | ||
const double & | kx, | ||
const double & | ky, | ||
const double & | kz, | ||
const double & | energy, | ||
const double & | L | ||
) |
References madness::apply(), e(), energy, madness::f, madness::g, I, kx, ky, kz, L, op(), madness::PeriodicBSHOperator3D(), and madness::vec().
Referenced by apply_periodic_bsh().
complex_function_3d apply_periodic_bsh | ( | World & | world, |
const complex_function_3d & | f, | ||
const Vector< double, 3 > & | kpt, | ||
const double & | energy, | ||
const double & | L | ||
) |
References apply_periodic_bsh(), energy, madness::f, and L.
vector_complex_function_3d apply_potential | ( | World & | world, |
const real_function_3d & | potential, | ||
const vector_complex_function_3d & | psi | ||
) |
References END_TIMER, madness::WorldGopInterface::fence(), madness::World::gop, madness::mul(), potential(), psi(), and START_TIMER.
Referenced by diag_and_transform(), initial_guess(), and main().
std::pair< vector_complex_function_3d, tensor_real > diag_and_transform | ( | World & | world, |
const Vector< double, 3 > | kpt, | ||
const real_function_3d & | v, | ||
const vector_complex_function_3d & | psik, | ||
int | nmo = 0 |
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) |
References madness::_(), std::abs(), apply_potential(), c, madness::copy(), e(), make_kinetic_matrix(), madness::matrix_inner(), madness::sygv(), thresh, madness::transform(), and v.
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References madness::cpu_time(), madness::World::rank(), sss, ttt, and madness::wall_time().
void fixphases | ( | World & | world, |
tensor_real & | e, | ||
tensor_complex & | U | ||
) |
References madness::_(), madness::arg(), madness::conj_transpose(), madness::copy(), e(), I, madness::inner(), matrix_exponential(), madness::phase(), madness::print(), q(), madness::World::rank(), rot, and thresh.
Referenced by main().
void fixphases | ( | World & | world, |
tensor_real & | e, | ||
tensor_complex & | U, | ||
vector_complex_function_3d & | psik | ||
) |
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vector_complex_function_3d initial_guess | ( | World & | world, |
const real_function_3d & | vnuc, | ||
real_function_3d & | rho, | ||
const std::vector< Vector< double, 3 > > & | kpoints, | ||
int | nst | ||
) |
References std::abs(), apply_potential(), c, e(), L, MADNESS_CHECK, make_coulomb_potential(), make_density(), make_kinetic_matrix(), make_lda_potential(), makeao(), madness::matrix_inner(), madness::print(), psi(), psi0(), madness::World::rank(), madness::BaseTensor::size(), madness::sygv(), thresh, madness::transform(), madness::transpose(), v, vnuc(), and madness::weights.
Referenced by main().
int main | ( | int | argc, |
char ** | argv | ||
) |
References std::abs(), madness::Molecule::add_atom(), aobasis, apply_potential(), madness::BC_PERIODIC, c, SafeMPI::COMM_WORLD, e(), fixphases(), madness::gaxpy(), initial_guess(), madness::initialize(), kwavelet, L, MADNESS_CHECK, make_coulomb_potential(), make_density(), make_kinetic_matrix(), make_lda_potential(), madness::matrix_inner(), molecule, madness::norm2(), orthogonalize(), madness::print(), madness::project(), psi(), madness::World::rank(), AtomicBasisSet::read_file(), madness::Function< T, NDIM >::scale(), madness::FunctionDefaults< NDIM >::set_bc(), madness::FunctionDefaults< NDIM >::set_cubic_cell(), madness::FunctionDefaults< NDIM >::set_k(), madness::FunctionDefaults< NDIM >::set_thresh(), madness::FunctionDefaults< NDIM >::set_truncate_mode(), madness::startup(), subspace, madness::sygv(), thresh, madness::Molecule::total_nuclear_charge(), madness::Function< T, NDIM >::trace(), madness::transform(), madness::Function< T, NDIM >::truncate(), madness::truncate(), truncate_mode, twopi, update(), madness::Molecule::update_rcut_with_eprec(), v, madness::vec(), vnuc(), and weight().
vector< poperatorT > make_bsh_operators | ( | World & | world, |
const tensor_real & | evals, | ||
double | shift | ||
) |
References madness::BSHOperatorPtr3D(), madness::BaseTensor::dim(), e(), shift, and thresh.
Referenced by madness::EigSolver< T, NDIM >::multi_solve().
real_function_3d make_coulomb_potential | ( | World & | world, |
const real_function_3d & | rho | ||
) |
References madness::CoulombOperator(), e(), END_TIMER, op(), START_TIMER, and thresh.
Referenced by initial_guess(), and main().
real_function_3d make_density | ( | World & | world, |
const vector_complex_function_3d & | v, | ||
double | weight | ||
) |
References madness::abssq(), END_TIMER, madness::Function< T, NDIM >::scale(), START_TIMER, madness::Function< T, NDIM >::truncate(), v, and weight().
Referenced by initial_guess(), and main().
tensor_complex make_kinetic_matrix | ( | World & | world, |
const vector_complex_function_3d & | v, | ||
const Vector< double, 3 > & | kpt | ||
) |
References madness::apply(), END_TIMER, f1, f2, f3, I, kx, ky, kz, madness::matrix_inner(), START_TIMER, and v.
Referenced by diag_and_transform(), initial_guess(), and main().
real_function_3d make_lda_potential | ( | World & | world, |
const real_function_3d & | rho | ||
) |
References madness::copy(), END_TIMER, and START_TIMER.
Referenced by initial_guess(), and main().
vector_complex_function_3d makeao | ( | World & | world, |
const std::vector< Vector< double, 3 > > & | kpts, | ||
double | R | ||
) |
References aobasis, madness::Function< T, NDIM >::compress(), END_TIMER, madness::Function< T, NDIM >::gaxpy(), AtomicBasisSet::get_atomic_basis_function(), I, k, L, maxR, molecule, AtomicBasisSet::nbf(), madness::print(), R, madness::World::rank(), and START_TIMER.
Referenced by initial_guess().
vector_complex_function_3d makeao_slow | ( | World & | world, |
const std::vector< Vector< double, 3 > > & | kpoints | ||
) |
tensor_complex matrix_exponential | ( | const tensor_complex & | A | ) |
References e(), madness::inner(), k, MADNESS_CHECK, and madness::scale().
Referenced by fixphases().
vector_complex_function_3d orth | ( | World & | world, |
const vector_complex_function_3d & | v, | ||
double | thresh = 1.e-10 |
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) |
References madness::_(), std::abs(), madness::copy(), e(), madness::matrix_inner(), madness::normalize(), madness::print(), R, madness::syev(), thresh, madness::transform(), and v.
void orthogonalize | ( | World & | world, |
vector_complex_function_3d & | psi | ||
) |
References madness::compress(), END_TIMER, madness::Function< T, NDIM >::gaxpy(), madness::inner(), madness::Function< T, NDIM >::norm2(), psi(), madness::Function< T, NDIM >::scale(), and START_TIMER.
Referenced by main().
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References madness::cpu_time(), madness::WorldGopInterface::fence(), madness::World::gop, sss, ttt, and madness::wall_time().
vcpairT update | ( | World & | world, |
int | ik, | ||
const vector_complex_function_3d & | psi, | ||
vector_complex_function_3d & | vpsi, | ||
const Vector< double, 3 > & | kpt, | ||
const real_function_3d & | v, | ||
const tensor_real & | e | ||
) |
References KPeriodicBSHOperator::apply(), e(), madness::gaxpy(), kx, ky, kz, L, psi(), madness::World::rank(), madness::scale(), shift, madness::sub(), and madness::truncate().
Referenced by main().
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Referenced by main().
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Referenced by apply_periodic_bsh(), apply_periodic_bsh(), initial_guess(), main(), makeao(), MolecularGuessDensityFunctor::operator()(), and update().
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Referenced by madness::apply(), makeao(), and AtomicBasisFunctor< Q >::operator()().
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Referenced by GaussianNucleusFunctor::GaussianNucleusFunctor(), madness::Nuclear< T, NDIM >::Nuclear(), NuclearVector::NuclearVector(), madness::PNOParameters::PNOParameters(), madness::AtomicBasisSet::atoms_to_bfn(), madness::AtomicBasisSet::basisfn_to_atom(), compute_frequencies(), madness::MP3::compute_mp3_ghij(), madness::MP3::compute_mp3_ghij_fast(), madness::MolecularOptimizer::compute_reduced_mass(), compute_reduced_mass(), madness::create_nuclear_correlation_factor(), madness::create_nuclear_correlation_factor(), madness::cubefile_header(), dipole_generator(), madness::do_response_orbital_vtk_plots(), madness::do_vtk_plots(), madness::MolecularEnergy::energy_and_gradient(), madness::AtomicBasisSet::eval(), madness::AtomicBasisSet::eval_guess_density(), madness::AtomicBasisSet::get_aeps(), madness::AtomicBasisSet::get_atomic_basis_function(), madness::AtomicBasisSet::get_avec(), madness::ACParameters< NDIM >::initialize(), initialize_calc_params(), madness::MolecularOrbitals< T, NDIM >::load_mos(), main(), main(), madness::make_atom_vec(), makeao(), makeao_slow(), madness::AtomicBasisSet::nbf(), nuclear_generator(), madness::MP3::MacroTaskMP3::operator()(), madness::TDHF::plot(), madness::AtomicBasisSet::print(), madness::AtomicBasisSet::print_anal(), madness::MolecularOrbitals< T, NDIM >::read_restartaodata(), madness::MolecularOrbitals< T, NDIM >::read_restartdata(), madness::MolecularOrbitals< T, NDIM >::save_restartaodata(), madness::MolecularOrbitals< T, NDIM >::save_restartdata(), madness::PNOParameters::set_derived_values(), madness::CalculationParameters::set_derived_values(), madness::ResponseParameters::set_derived_values(), madness::AtomicBasisSet::shells_to_bfn(), and madness::write_molecules_to_file().
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Referenced by END_TIMER(), and START_TIMER().
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Referenced by diag_and_transform(), fixphases(), fixphases(), initial_guess(), main(), make_bsh_operators(), make_coulomb_potential(), and orth().
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Referenced by main().
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Referenced by END_TIMER(), and START_TIMER().
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Referenced by main().